data_6A6K
#
_model_server_result.job_id            XyY5kc_GMCMzqsrLHbRkoQ 
_model_server_result.datetime_utc      '2024-12-26 11:29:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6a6k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":501}' 
#
_entry.id    6A6K 
#
_exptl.entry_id    6A6K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.619 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-[(~{E})-5-oxidanyl-2-phenyl-1-[4-(4-propan-2-ylpiperazin-1-yl)phenyl]pent-1-enyl]phenol 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.19 
_cell.angle_gamma         90 
_cell.entry_id            6A6K 
_cell.length_a            105.828 
_cell.length_b            78.571 
_cell.length_c            106.963 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6A6K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,G 1 1 
B,E,H 2 1 
C,F,I 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'C30 H36 N2 O2' 
_chem_comp.formula_weight    456.619 
_chem_comp.id                9S6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-[(~{E})-5-oxidanyl-2-phenyl-1-[4-(4-propan-2-ylpiperazin-1-yl)phenyl]pent-1-enyl]phenol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C12 C13 9S6 doub 1 n y 
C12 C11 9S6 sing 2 n y 
C13 C14 9S6 sing 3 n y 
C13 C16 9S6 sing 4 n n 
C14 C15 9S6 doub 5 n y 
C17 C18 9S6 doub 6 n y 
C17 C22 9S6 sing 7 n y 
C17 C16 9S6 sing 8 n n 
C18 C19 9S6 sing 9 n y 
C22 C21 9S6 doub 10 n y 
C24 C25 9S6 sing 11 n n 
C24 C29 9S6 sing 12 n n 
C24 C16 9S6 doub 13 e n 
C25 C26 9S6 sing 14 n n 
C26 C27 9S6 sing 15 n n 
C27 O28 9S6 sing 16 n n 
C29 C30 9S6 doub 17 n y 
C29 C34 9S6 sing 18 n y 
C30 C31 9S6 sing 19 n y 
C31 C32 9S6 doub 20 n y 
C32 C33 9S6 sing 21 n y 
C34 C33 9S6 doub 22 n y 
C01 C02 9S6 sing 23 n n 
C02 C03 9S6 sing 24 n n 
C02 N04 9S6 sing 25 n n 
C05 C06 9S6 sing 26 n n 
C05 N04 9S6 sing 27 n n 
C06 N07 9S6 sing 28 n n 
C08 C09 9S6 sing 29 n n 
C08 N07 9S6 sing 30 n n 
C09 N04 9S6 sing 31 n n 
C10 C11 9S6 doub 32 n y 
C10 C15 9S6 sing 33 n y 
C10 N07 9S6 sing 34 n n 
C19 C20 9S6 doub 35 n y 
C19 O23 9S6 sing 36 n n 
C20 C21 9S6 sing 37 n y 
C12 H121 9S6 sing 38 n n 
C14 H141 9S6 sing 39 n n 
C18 H181 9S6 sing 40 n n 
C22 H221 9S6 sing 41 n n 
C25 H252 9S6 sing 42 n n 
C25 H251 9S6 sing 43 n n 
C26 H261 9S6 sing 44 n n 
C26 H262 9S6 sing 45 n n 
C27 H272 9S6 sing 46 n n 
C27 H271 9S6 sing 47 n n 
C30 H301 9S6 sing 48 n n 
C31 H311 9S6 sing 49 n n 
C32 H321 9S6 sing 50 n n 
C34 H341 9S6 sing 51 n n 
C01 H013 9S6 sing 52 n n 
C01 H011 9S6 sing 53 n n 
C01 H012 9S6 sing 54 n n 
C02 H021 9S6 sing 55 n n 
C03 H032 9S6 sing 56 n n 
C03 H031 9S6 sing 57 n n 
C03 H033 9S6 sing 58 n n 
C05 H051 9S6 sing 59 n n 
C05 H052 9S6 sing 60 n n 
C06 H061 9S6 sing 61 n n 
C06 H062 9S6 sing 62 n n 
C08 H081 9S6 sing 63 n n 
C08 H082 9S6 sing 64 n n 
C09 H092 9S6 sing 65 n n 
C09 H091 9S6 sing 66 n n 
C11 H111 9S6 sing 67 n n 
C15 H151 9S6 sing 68 n n 
C20 H201 9S6 sing 69 n n 
C21 H211 9S6 sing 70 n n 
C33 H331 9S6 sing 71 n n 
O23 H231 9S6 sing 72 n n 
O28 H281 9S6 sing 73 n n 
#
_atom_sites.entry_id                     6A6K 
_atom_sites.fract_transf_matrix[1][1]    0.009449 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003289 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012727 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009899 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 9S6 A 1 501 3 9S6 DN2 . 
E 2 9S6 B 1 501 2 9S6 DN2 . 
F 2 9S6 C 1 501 1 9S6 DN2 . 
G 3 HOH A 1 601 4 HOH HOH . 
G 3 HOH A 2 602 3 HOH HOH . 
H 3 HOH B 1 601 12 HOH HOH . 
H 3 HOH B 2 602 15 HOH HOH . 
H 3 HOH B 3 603 1 HOH HOH . 
I 3 HOH C 1 601 14 HOH HOH . 
I 3 HOH C 2 602 11 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C12 9S6 . . . F 2 119.08 -1.167 115.196 1 53.14 ? C12 9S6 501 C 1 
HETATM 2 C C13 9S6 . . . F 2 117.885 -1.826 115.11 1 53.96 ? C13 9S6 501 C 1 
HETATM 3 C C14 9S6 . . . F 2 117.145 -1.544 113.92 1 52.71 ? C14 9S6 501 C 1 
HETATM 4 C C17 9S6 . . . F 2 116.727 -4.086 115.511 1 51.67 ? C17 9S6 501 C 1 
HETATM 5 C C18 9S6 . . . F 2 117.415 -4.93 114.633 1 53.19 ? C18 9S6 501 C 1 
HETATM 6 C C22 9S6 . . . F 2 115.398 -4.31 115.795 1 51.53 ? C22 9S6 501 C 1 
HETATM 7 C C24 9S6 . . . F 2 117.455 -2.504 117.455 1 60.81 ? C24 9S6 501 C 1 
HETATM 8 C C25 9S6 . . . F 2 116.911 -3.49 118.533 1 64.79 ? C25 9S6 501 C 1 
HETATM 9 C C26 9S6 . . . F 2 115.745 -2.8 119.247 1 60.19 ? C26 9S6 501 C 1 
HETATM 10 C C27 9S6 . . . F 2 115.688 -3.261 120.706 1 69.52 ? C27 9S6 501 C 1 
HETATM 11 C C29 9S6 . . . F 2 118.055 -1.188 118.063 1 58.4 ? C29 9S6 501 C 1 
HETATM 12 C C30 9S6 . . . F 2 117.472 0.061 117.789 1 60.84 ? C30 9S6 501 C 1 
HETATM 13 C C31 9S6 . . . F 2 117.987 1.242 118.345 1 64.34 ? C31 9S6 501 C 1 
HETATM 14 C C32 9S6 . . . F 2 119.075 1.182 119.202 1 66.55 ? C32 9S6 501 C 1 
HETATM 15 C C34 9S6 . . . F 2 119.126 -1.241 118.938 1 61.4 ? C34 9S6 501 C 1 
HETATM 16 C C01 9S6 . . . F 2 120.554 4.786 109.753 1 91.31 ? C01 9S6 501 C 1 
HETATM 17 C C02 9S6 . . . F 2 121.105 3.382 109.279 1 78.19 ? C02 9S6 501 C 1 
HETATM 18 C C03 9S6 . . . F 2 120.891 3.066 107.761 1 68.95 ? C03 9S6 501 C 1 
HETATM 19 C C05 9S6 . . . F 2 121.282 2.453 111.312 1 69.18 ? C05 9S6 501 C 1 
HETATM 20 C C06 9S6 . . . F 2 120.912 1.245 112.183 1 66.71 ? C06 9S6 501 C 1 
HETATM 21 C C08 9S6 . . . F 2 119.052 0.837 110.808 1 64.8 ? C08 9S6 501 C 1 
HETATM 22 C C09 9S6 . . . F 2 119.348 2.162 110.111 1 65.86 ? C09 9S6 501 C 1 
HETATM 23 C C10 9S6 . . . F 2 118.926 -0.006 113.203 1 61.47 ? C10 9S6 501 C 1 
HETATM 24 C C11 9S6 . . . F 2 119.712 -0.257 114.376 1 57.19 ? C11 9S6 501 C 1 
HETATM 25 C C15 9S6 . . . F 2 117.642 -0.627 112.946 1 51.85 ? C15 9S6 501 C 1 
HETATM 26 C C16 9S6 . . . F 2 117.372 -2.799 116.142 1 56.07 ? C16 9S6 501 C 1 
HETATM 27 C C19 9S6 . . . F 2 116.75 -6.031 114.089 1 56.63 ? C19 9S6 501 C 1 
HETATM 28 C C20 9S6 . . . F 2 115.41 -6.27 114.402 1 62.71 ? C20 9S6 501 C 1 
HETATM 29 C C21 9S6 . . . F 2 114.73 -5.413 115.254 1 57.36 ? C21 9S6 501 C 1 
HETATM 30 C C33 9S6 . . . F 2 119.641 -0.062 119.498 1 64.25 ? C33 9S6 501 C 1 
HETATM 31 N N04 9S6 . . . F 2 120.708 2.386 110.058 1 71.97 ? N04 9S6 501 C 1 
HETATM 32 N N07 9S6 . . . F 2 119.485 0.951 112.189 1 65.27 ? N07 9S6 501 C 1 
HETATM 33 O O23 9S6 . . . F 2 117.389 -6.924 113.234 1 55.92 ? O23 9S6 501 C 1 
HETATM 34 O O28 9S6 . . . F 2 114.908 -4.431 120.681 1 72.45 ? O28 9S6 501 C 1 
HETATM 35 H H121 9S6 . . . F 2 118.603 -0.971 114.421 1 63.77 ? H121 9S6 501 C 1 
HETATM 36 H H141 9S6 . . . F 2 116.323 -1.957 113.783 1 63.25 ? H141 9S6 501 C 1 
HETATM 37 H H181 9S6 . . . F 2 118.308 -4.771 114.428 1 63.83 ? H181 9S6 501 C 1 
HETATM 38 H H221 9S6 . . . F 2 114.946 -3.733 116.367 1 61.84 ? H221 9S6 501 C 1 
HETATM 39 H H252 9S6 . . . F 2 117.61 -3.699 119.172 1 77.75 ? H252 9S6 501 C 1 
HETATM 40 H H251 9S6 . . . F 2 116.599 -4.303 118.107 1 77.75 ? H251 9S6 501 C 1 
HETATM 41 H H261 9S6 . . . F 2 114.914 -3.029 118.802 1 72.22 ? H261 9S6 501 C 1 
HETATM 42 H H262 9S6 . . . F 2 115.872 -1.838 119.218 1 72.22 ? H262 9S6 501 C 1 
HETATM 43 H H272 9S6 . . . F 2 115.266 -2.585 121.259 1 83.43 ? H272 9S6 501 C 1 
HETATM 44 H H271 9S6 . . . F 2 116.579 -3.458 121.034 1 83.43 ? H271 9S6 501 C 1 
HETATM 45 H H301 9S6 . . . F 2 116.745 0.109 117.211 1 73 ? H301 9S6 501 C 1 
HETATM 46 H H311 9S6 . . . F 2 117.599 2.062 118.139 1 77.2 ? H311 9S6 501 C 1 
HETATM 47 H H321 9S6 . . . F 2 119.422 1.959 119.577 1 79.86 ? H321 9S6 501 C 1 
HETATM 48 H H341 9S6 . . . F 2 119.517 -2.06 119.142 1 73.68 ? H341 9S6 501 C 1 
HETATM 49 H H013 9S6 . . . F 2 120.495 5.385 108.992 1 109.58 ? H013 9S6 501 C 1 
HETATM 50 H H011 9S6 . . . F 2 121.155 5.163 110.414 1 109.58 ? H011 9S6 501 C 1 
HETATM 51 H H012 9S6 . . . F 2 119.673 4.673 110.143 1 109.58 ? H012 9S6 501 C 1 
HETATM 52 H H021 9S6 . . . F 2 122.067 3.433 109.397 1 93.83 ? H021 9S6 501 C 1 
HETATM 53 H H032 9S6 . . . F 2 120.115 2.494 107.656 1 82.74 ? H032 9S6 501 C 1 
HETATM 54 H H031 9S6 . . . F 2 121.675 2.615 107.411 1 82.74 ? H031 9S6 501 C 1 
HETATM 55 H H033 9S6 . . . F 2 120.75 3.894 107.275 1 82.74 ? H033 9S6 501 C 1 
HETATM 56 H H051 9S6 . . . F 2 122.247 2.486 111.215 1 83.02 ? H051 9S6 501 C 1 
HETATM 57 H H052 9S6 . . . F 2 120.977 3.261 111.753 1 83.02 ? H052 9S6 501 C 1 
HETATM 58 H H061 9S6 . . . F 2 121.195 1.421 113.094 1 80.05 ? H061 9S6 501 C 1 
HETATM 59 H H062 9S6 . . . F 2 121.386 0.467 111.85 1 80.05 ? H062 9S6 501 C 1 
HETATM 60 H H081 9S6 . . . F 2 119.54 0.122 110.37 1 77.76 ? H081 9S6 501 C 1 
HETATM 61 H H082 9S6 . . . F 2 118.099 0.658 110.778 1 77.76 ? H082 9S6 501 C 1 
HETATM 62 H H092 9S6 . . . F 2 118.926 2.884 110.603 1 79.04 ? H092 9S6 501 C 1 
HETATM 63 H H091 9S6 . . . F 2 118.995 2.134 109.208 1 79.04 ? H091 9S6 501 C 1 
HETATM 64 H H111 9S6 . . . F 2 120.54 0.128 114.552 1 68.62 ? H111 9S6 501 C 1 
HETATM 65 H H151 9S6 . . . F 2 117.163 -0.44 112.171 1 62.22 ? H151 9S6 501 C 1 
HETATM 66 H H201 9S6 . . . F 2 114.974 -7.007 114.04 1 75.26 ? H201 9S6 501 C 1 
HETATM 67 H H211 9S6 . . . F 2 113.838 -5.571 115.464 1 68.83 ? H211 9S6 501 C 1 
HETATM 68 H H331 9S6 . . . F 2 120.372 -0.107 120.071 1 77.1 ? H331 9S6 501 C 1 
HETATM 69 H H231 9S6 . . . F 2 117.552 -7.647 113.65 1 67.11 ? H231 9S6 501 C 1 
HETATM 70 H H281 9S6 . . . F 2 114.095 -4.232 120.829 1 86.94 ? H281 9S6 501 C 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           70 
#