data_6A6R
#
_model_server_result.job_id            98ZUxXQntR8baaRiVvIwrg 
_model_server_result.datetime_utc      '2024-11-12 21:48:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6a6r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    6A6R 
#
_exptl.entry_id    6A6R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              152.235 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S,5S)-1,2-DITHIANE-4,5-DIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6A6R 
_cell.length_a            73.199 
_cell.length_b            73.199 
_cell.length_c            162.305 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6A6R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C THR 17 A THR 17 1_555 A N MSE 18 A MSE 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C MSE 18 A MSE 18 1_555 A N GLY 19 A GLY 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 A C ASP 76 A ASP 76 1_555 A N MSE 77 A MSE 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 A C MSE 77 A MSE 77 1_555 A N TRP 78 A TRP 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale5 A C GLN 93 A GLN 93 1_555 A N MSE 94 A MSE 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale6 A C MSE 94 A MSE 94 1_555 A N ASP 95 A ASP 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale7 A C ARG 107 A ARG 107 1_555 A N MSE 108 A MSE 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale8 A C MSE 108 A MSE 108 1_555 A N ARG 109 A ARG 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale9 A C PHE 152 A PHE 152 1_555 A N CSO 153 A CSO 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale10 A C CSO 153 A CSO 153 1_555 A N GLY 154 A GLY 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale11 A C LYS 290 A LYS 290 1_555 A N MSE 291 A MSE 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale12 A C MSE 291 A MSE 291 1_555 A N HIS 292 A HIS 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? 
covale ? covale13 A C ALA 345 A ALA 345 1_555 A N MSE 346 A MSE 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale14 A C MSE 346 A MSE 346 1_555 A N CYS 347 A CYS 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale15 A SG CYS 347 A CYS 347 1_555 B C8M FAD . A FAD 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.695 ? 
covale ? covale16 A C ASP 428 A ASP 428 1_555 A N MSE 429 A MSE 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale17 A C MSE 429 A MSE 429 1_555 A N PRO 430 A PRO 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
#
_chem_comp.formula           'C4 H8 O2 S2' 
_chem_comp.formula_weight    152.235 
_chem_comp.id                D1D 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S,5S)-1,2-DITHIANE-4,5-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6A6R 
_atom_sites.fract_transf_matrix[1][1]    0.013661 
_atom_sites.fract_transf_matrix[1][2]    0.007887 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015775 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006161 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FAD A 1 501 500 FAD FAD . 
C 3 D1D A 1 502 1 D1D D1D . 
D 3 D1D A 1 503 2 D1D D1D . 
E 4 SO4 A 1 504 1 SO4 SO4 . 
F 5 HOH A 1 601 3 HOH HOH . 
F 5 HOH A 2 602 18 HOH HOH . 
F 5 HOH A 3 603 42 HOH HOH . 
F 5 HOH A 4 604 40 HOH HOH . 
F 5 HOH A 5 605 6 HOH HOH . 
F 5 HOH A 6 606 25 HOH HOH . 
F 5 HOH A 7 607 36 HOH HOH . 
F 5 HOH A 8 608 9 HOH HOH . 
F 5 HOH A 9 609 2 HOH HOH . 
F 5 HOH A 10 610 37 HOH HOH . 
F 5 HOH A 11 611 24 HOH HOH . 
F 5 HOH A 12 612 1 HOH HOH . 
F 5 HOH A 13 613 35 HOH HOH . 
F 5 HOH A 14 614 19 HOH HOH . 
F 5 HOH A 15 615 27 HOH HOH . 
F 5 HOH A 16 616 10 HOH HOH . 
F 5 HOH A 17 617 17 HOH HOH . 
F 5 HOH A 18 618 14 HOH HOH . 
F 5 HOH A 19 619 7 HOH HOH . 
F 5 HOH A 20 620 16 HOH HOH . 
F 5 HOH A 21 621 12 HOH HOH . 
F 5 HOH A 22 622 13 HOH HOH . 
F 5 HOH A 23 623 38 HOH HOH . 
F 5 HOH A 24 624 33 HOH HOH . 
F 5 HOH A 25 625 21 HOH HOH . 
F 5 HOH A 26 626 11 HOH HOH . 
F 5 HOH A 27 627 15 HOH HOH . 
F 5 HOH A 28 628 31 HOH HOH . 
F 5 HOH A 29 629 34 HOH HOH . 
F 5 HOH A 30 630 43 HOH HOH . 
F 5 HOH A 31 631 8 HOH HOH . 
F 5 HOH A 32 632 39 HOH HOH . 
F 5 HOH A 33 633 4 HOH HOH . 
F 5 HOH A 34 634 45 HOH HOH . 
F 5 HOH A 35 635 23 HOH HOH . 
F 5 HOH A 36 636 22 HOH HOH . 
F 5 HOH A 37 637 32 HOH HOH . 
F 5 HOH A 38 638 30 HOH HOH . 
F 5 HOH A 39 639 5 HOH HOH . 
F 5 HOH A 40 640 26 HOH HOH . 
F 5 HOH A 41 641 20 HOH HOH . 
F 5 HOH A 42 642 29 HOH HOH . 
F 5 HOH A 43 643 41 HOH HOH . 
F 5 HOH A 44 644 28 HOH HOH . 
F 5 HOH A 45 645 44 HOH HOH . 
F 5 HOH A 46 646 46 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S1 D1D . . . C 3 -7.736 -25.112 34.797 1 101.05 ? S1 D1D 502 A 1 
HETATM 2 C C1 D1D . . . C 3 -7.329 -26.696 35.465 1 51.34 ? C1 D1D 502 A 1 
HETATM 3 C C2 D1D . . . C 3 -6.872 -27.718 34.424 1 51.7 ? C2 D1D 502 A 1 
HETATM 4 O O2 D1D . . . C 3 -7.917 -27.915 33.463 1 53.19 ? O2 D1D 502 A 1 
HETATM 5 C C3 D1D . . . C 3 -5.569 -27.362 33.707 1 50.26 ? C3 D1D 502 A 1 
HETATM 6 O O3 D1D . . . C 3 -4.551 -28.281 34.11 1 50.13 ? O3 D1D 502 A 1 
HETATM 7 C C4 D1D . . . C 3 -5.113 -25.939 33.996 1 49.79 ? C4 D1D 502 A 1 
HETATM 8 S S4 D1D . . . C 3 -6.347 -24.848 33.385 1 79.24 ? S4 D1D 502 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           346 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           8 
#