data_6A6V
#
_model_server_result.job_id            ypK855csEn2ovAZ22b46kw 
_model_server_result.datetime_utc      '2024-11-23 00:48:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6a6v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    6A6V 
#
_exptl.entry_id    6A6V 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6A6V 
_cell.length_a            135.54 
_cell.length_b            135.54 
_cell.length_c            144.68 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6A6V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D 1 1 
B,E,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 347 A CYS 347 1_555 C C8M FAD . A FAD 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.609 ? 
covale ? covale2 B SG CYS 347 H CYS 347 1_555 E C8M FAD . H FAD 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.622 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     6A6V 
_atom_sites.fract_transf_matrix[1][1]    0.007378 
_atom_sites.fract_transf_matrix[1][2]    0.00426 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008519 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006912 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 501 500 FAD FAD . 
D 3 FSA A 1 502 2 FSA FSA . 
E 2 FAD H 1 501 500 FAD FAD . 
F 3 FSA H 1 502 1 FSA FSA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . C 2 7.197 -48.035 -0.274 1 33.59 ? PA FAD 501 A 1 
HETATM 2 O O1A FAD . . . C 2 7.586 -48.933 0.735 1 54.62 ? O1A FAD 501 A 1 
HETATM 3 O O2A FAD . . . C 2 6.173 -47.14 0.015 1 41.26 ? O2A FAD 501 A 1 
HETATM 4 O O5B FAD . . . C 2 8.379 -47.196 -0.59 1 66.87 ? O5B FAD 501 A 1 
HETATM 5 C C5B FAD . . . C 2 8.321 -45.809 -0.937 1 80.79 ? C5B FAD 501 A 1 
HETATM 6 C C4B FAD . . . C 2 9.536 -44.982 -0.534 1 73.35 ? C4B FAD 501 A 1 
HETATM 7 O O4B FAD . . . C 2 9.46 -43.939 -1.361 1 61.97 ? O4B FAD 501 A 1 
HETATM 8 C C3B FAD . . . C 2 9.285 -44.27 0.727 1 75.32 ? C3B FAD 501 A 1 
HETATM 9 O O3B FAD . . . C 2 10.161 -44.794 1.633 1 93.2 ? O3B FAD 501 A 1 
HETATM 10 C C2B FAD . . . C 2 9.736 -42.892 0.512 1 61.55 ? C2B FAD 501 A 1 
HETATM 11 O O2B FAD . . . C 2 10.792 -42.649 1.442 1 83.61 ? O2B FAD 501 A 1 
HETATM 12 C C1B FAD . . . C 2 10.31 -43.018 -0.823 1 54.82 ? C1B FAD 501 A 1 
HETATM 13 N N9A FAD . . . C 2 10.139 -41.809 -1.584 1 49.31 ? N9A FAD 501 A 1 
HETATM 14 C C8A FAD . . . C 2 8.983 -41.299 -1.867 1 34.61 ? C8A FAD 501 A 1 
HETATM 15 N N7A FAD . . . C 2 9.159 -40.215 -2.572 1 37.62 ? N7A FAD 501 A 1 
HETATM 16 C C5A FAD . . . C 2 10.446 -40.047 -2.714 1 54.38 ? C5A FAD 501 A 1 
HETATM 17 C C6A FAD . . . C 2 11.159 -39.132 -3.328 1 50.29 ? C6A FAD 501 A 1 
HETATM 18 N N6A FAD . . . C 2 10.523 -38.171 -3.92 1 52.04 ? N6A FAD 501 A 1 
HETATM 19 N N1A FAD . . . C 2 12.455 -39.155 -3.359 1 44.38 ? N1A FAD 501 A 1 
HETATM 20 C C2A FAD . . . C 2 13.092 -40.153 -2.726 1 36.14 ? C2A FAD 501 A 1 
HETATM 21 N N3A FAD . . . C 2 12.354 -41.088 -2.115 1 28.94 ? N3A FAD 501 A 1 
HETATM 22 C C4A FAD . . . C 2 11.044 -41.031 -2.108 1 49.72 ? C4A FAD 501 A 1 
HETATM 23 N N1 FAD . . . C 2 1.307 -55.653 1.548 1 32.96 ? N1 FAD 501 A 1 
HETATM 24 C C2 FAD . . . C 2 1.258 -56.962 1.907 1 38.06 ? C2 FAD 501 A 1 
HETATM 25 O O2 FAD . . . C 2 1.928 -57.806 1.382 1 38.03 ? O2 FAD 501 A 1 
HETATM 26 N N3 FAD . . . C 2 0.467 -57.389 2.877 1 34.46 ? N3 FAD 501 A 1 
HETATM 27 C C4 FAD . . . C 2 -0.306 -56.521 3.506 1 36.55 ? C4 FAD 501 A 1 
HETATM 28 O O4 FAD . . . C 2 -1.009 -56.96 4.38 1 43.02 ? O4 FAD 501 A 1 
HETATM 29 C C4X FAD . . . C 2 -0.281 -55.2 3.168 1 49.96 ? C4X FAD 501 A 1 
HETATM 30 N N5 FAD . . . C 2 -1.085 -54.362 3.85 1 62.02 ? N5 FAD 501 A 1 
HETATM 31 C C5X FAD . . . C 2 -1.088 -53.057 3.546 1 44.63 ? C5X FAD 501 A 1 
HETATM 32 C C6 FAD . . . C 2 -1.909 -52.239 4.269 1 40.69 ? C6 FAD 501 A 1 
HETATM 33 C C7 FAD . . . C 2 -1.981 -50.894 4.03 1 45.01 ? C7 FAD 501 A 1 
HETATM 34 C C7M FAD . . . C 2 -2.848 -50.157 4.8 1 30.86 ? C7M FAD 501 A 1 
HETATM 35 C C8 FAD . . . C 2 -1.178 -50.357 3.059 1 42.24 ? C8 FAD 501 A 1 
HETATM 36 C C8M FAD . . . C 2 -1.183 -49.005 2.792 1 38.84 ? C8M FAD 501 A 1 
HETATM 37 C C9 FAD . . . C 2 -0.358 -51.218 2.343 1 30.07 ? C9 FAD 501 A 1 
HETATM 38 C C9A FAD . . . C 2 -0.283 -52.585 2.556 1 37.66 ? C9A FAD 501 A 1 
HETATM 39 N N10 FAD . . . C 2 0.546 -53.411 1.875 1 40.33 ? N10 FAD 501 A 1 
HETATM 40 C C10 FAD . . . C 2 0.524 -54.722 2.165 1 42.84 ? C10 FAD 501 A 1 
HETATM 41 C C1' FAD . . . C 2 1.377 -52.874 0.795 1 17.15 ? C1' FAD 501 A 1 
HETATM 42 C C2' FAD . . . C 2 2.872 -52.964 0.817 1 33.2 ? C2' FAD 501 A 1 
HETATM 43 O O2' FAD . . . C 2 3.327 -52.144 1.822 1 34.48 ? O2' FAD 501 A 1 
HETATM 44 C C3' FAD . . . C 2 3.41 -52.285 -0.412 1 32.22 ? C3' FAD 501 A 1 
HETATM 45 O O3' FAD . . . C 2 2.925 -52.987 -1.504 1 33.1 ? O3' FAD 501 A 1 
HETATM 46 C C4' FAD . . . C 2 4.911 -52.336 -0.361 1 30.69 ? C4' FAD 501 A 1 
HETATM 47 O O4' FAD . . . C 2 5.258 -51.632 0.767 1 32.62 ? O4' FAD 501 A 1 
HETATM 48 C C5' FAD . . . C 2 5.609 -51.777 -1.615 1 39.04 ? C5' FAD 501 A 1 
HETATM 49 O O5' FAD . . . C 2 6.222 -50.502 -1.451 1 37.51 ? O5' FAD 501 A 1 
HETATM 50 P P FAD . . . C 2 7.26 -50.057 -2.311 1 37.33 ? P FAD 501 A 1 
HETATM 51 O O1P FAD . . . C 2 8.541 -49.944 -1.781 1 29.07 ? O1P FAD 501 A 1 
HETATM 52 O O2P FAD . . . C 2 6.9 -49.565 -3.568 1 24.8 ? O2P FAD 501 A 1 
HETATM 53 O O3P FAD . . . C 2 6.871 -48.758 -1.649 1 28.76 ? O3P FAD 501 A 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           53 
#