data_6A6V # _model_server_result.job_id DX2o5YFL43w-O5SRS0rycw _model_server_result.datetime_utc '2024-11-23 00:43:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6a6v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 6A6V # _exptl.entry_id 6A6V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 254.258 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-S-(carboxymethyl)-1-thio-beta-D-fructopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6A6V _cell.length_a 135.54 _cell.length_b 135.54 _cell.length_c 144.68 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6A6V _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 347 A CYS 347 1_555 C C8M FAD . A FAD 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.609 ? covale ? covale2 B SG CYS 347 H CYS 347 1_555 E C8M FAD . H FAD 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.622 ? # _chem_comp.formula 'C8 H14 O7 S' _chem_comp.formula_weight 254.258 _chem_comp.id FSA _chem_comp.mon_nstd_flag . _chem_comp.name 1-S-(carboxymethyl)-1-thio-beta-D-fructopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms 1-S-(carboxymethyl)-1-thio-beta-D-fructose;1-S-(carboxymethyl)-1-thio-D-fructose;1-S-(carboxymethyl)-1-thio-fructose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAL OAB FSA sing 174 n n OAB HOAB FSA sing 175 n n OAA CAL FSA doub 176 n n CAL CAH FSA sing 177 n n CAH SAK FSA sing 178 n n CAH HAH FSA sing 179 n n CAH HAHA FSA sing 180 n n SAK C1 FSA sing 181 n n C1 C2 FSA sing 182 n n C1 H11 FSA sing 183 n n C1 H12 FSA sing 184 n n C3 C2 FSA sing 185 n n C2 O2 FSA sing 186 n n C2 O6 FSA sing 187 n n O2 HO2 FSA sing 188 n n O3 C3 FSA sing 189 n n C3 C4 FSA sing 190 n n C3 H3 FSA sing 191 n n O3 HO3 FSA sing 192 n n O4 C4 FSA sing 193 n n C4 C5 FSA sing 194 n n C4 H4 FSA sing 195 n n O4 HO4 FSA sing 196 n n O5 C5 FSA sing 197 n n C5 C6 FSA sing 198 n n C5 H5 FSA sing 199 n n O5 HO5 FSA sing 200 n n O6 C6 FSA sing 201 n n C6 H61 FSA sing 202 n n C6 H62 FSA sing 203 n n # _atom_sites.entry_id 6A6V _atom_sites.fract_transf_matrix[1][1] 0.007378 _atom_sites.fract_transf_matrix[1][2] 0.00426 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008519 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006912 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 501 500 FAD FAD . D 3 FSA A 1 502 2 FSA FSA . E 2 FAD H 1 501 500 FAD FAD . F 3 FSA H 1 502 1 FSA FSA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAB FSA . . . D 3 -1.445 -60.273 1.18 1 73.71 ? OAB FSA 502 A 1 HETATM 2 C CAL FSA . . . D 3 -2.214 -59.395 0.799 1 65.3 ? CAL FSA 502 A 1 HETATM 3 O OAA FSA . . . D 3 -2.381 -59.05 -0.361 1 74.68 ? OAA FSA 502 A 1 HETATM 4 C CAH FSA . . . D 3 -3.005 -58.684 1.826 1 54.07 ? CAH FSA 502 A 1 HETATM 5 S SAK FSA . . . D 3 -2.952 -56.961 1.384 1 58.77 ? SAK FSA 502 A 1 HETATM 6 C C1 FSA . . . D 3 -4.431 -56.379 2.206 1 63.27 ? C1 FSA 502 A 1 HETATM 7 C C2 FSA . . . D 3 -4.782 -55.015 1.755 1 56.21 ? C2 FSA 502 A 1 HETATM 8 O O2 FSA . . . D 3 -5.47 -54.361 2.7 1 74.72 ? O2 FSA 502 A 1 HETATM 9 C C3 FSA . . . D 3 -5.55 -55.065 0.496 1 33.26 ? C3 FSA 502 A 1 HETATM 10 O O3 FSA . . . D 3 -6.893 -55.365 0.821 1 77.58 ? O3 FSA 502 A 1 HETATM 11 C C4 FSA . . . D 3 -5.53 -53.743 -0.211 1 40.38 ? C4 FSA 502 A 1 HETATM 12 O O4 FSA . . . D 3 -5.702 -54.041 -1.506 1 84.41 ? O4 FSA 502 A 1 HETATM 13 C C5 FSA . . . D 3 -4.213 -53.059 -0.219 1 53.77 ? C5 FSA 502 A 1 HETATM 14 O O5 FSA . . . D 3 -3.396 -53.96 -0.788 1 72.24 ? O5 FSA 502 A 1 HETATM 15 C C6 FSA . . . D 3 -3.763 -52.951 1.15 1 54.02 ? C6 FSA 502 A 1 HETATM 16 O O6 FSA . . . D 3 -3.624 -54.269 1.626 1 61.12 ? O6 FSA 502 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #