data_6A6V # _model_server_result.job_id yBN3s-tAhEFcbO-CBmP6EA _model_server_result.datetime_utc '2024-11-23 00:43:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6a6v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":502}' # _entry.id 6A6V # _exptl.entry_id 6A6V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 254.258 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-S-(carboxymethyl)-1-thio-beta-D-fructopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6A6V _cell.length_a 135.54 _cell.length_b 135.54 _cell.length_c 144.68 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6A6V _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 347 A CYS 347 1_555 C C8M FAD . A FAD 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.609 ? covale ? covale2 B SG CYS 347 H CYS 347 1_555 E C8M FAD . H FAD 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.622 ? # _chem_comp.formula 'C8 H14 O7 S' _chem_comp.formula_weight 254.258 _chem_comp.id FSA _chem_comp.mon_nstd_flag . _chem_comp.name 1-S-(carboxymethyl)-1-thio-beta-D-fructopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms 1-S-(carboxymethyl)-1-thio-beta-D-fructose;1-S-(carboxymethyl)-1-thio-D-fructose;1-S-(carboxymethyl)-1-thio-fructose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAL OAB FSA sing 174 n n OAB HOAB FSA sing 175 n n OAA CAL FSA doub 176 n n CAL CAH FSA sing 177 n n CAH SAK FSA sing 178 n n CAH HAH FSA sing 179 n n CAH HAHA FSA sing 180 n n SAK C1 FSA sing 181 n n C1 C2 FSA sing 182 n n C1 H11 FSA sing 183 n n C1 H12 FSA sing 184 n n C3 C2 FSA sing 185 n n C2 O2 FSA sing 186 n n C2 O6 FSA sing 187 n n O2 HO2 FSA sing 188 n n O3 C3 FSA sing 189 n n C3 C4 FSA sing 190 n n C3 H3 FSA sing 191 n n O3 HO3 FSA sing 192 n n O4 C4 FSA sing 193 n n C4 C5 FSA sing 194 n n C4 H4 FSA sing 195 n n O4 HO4 FSA sing 196 n n O5 C5 FSA sing 197 n n C5 C6 FSA sing 198 n n C5 H5 FSA sing 199 n n O5 HO5 FSA sing 200 n n O6 C6 FSA sing 201 n n C6 H61 FSA sing 202 n n C6 H62 FSA sing 203 n n # _atom_sites.entry_id 6A6V _atom_sites.fract_transf_matrix[1][1] 0.007378 _atom_sites.fract_transf_matrix[1][2] 0.00426 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008519 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006912 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 501 500 FAD FAD . D 3 FSA A 1 502 2 FSA FSA . E 2 FAD H 1 501 500 FAD FAD . F 3 FSA H 1 502 1 FSA FSA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAB FSA . . . F 3 9.224 -58.614 -46.939 1 86.51 ? OAB FSA 502 H 1 HETATM 2 C CAL FSA . . . F 3 9.308 -58.866 -48.146 1 83.37 ? CAL FSA 502 H 1 HETATM 3 O OAA FSA . . . F 3 8.712 -59.751 -48.76 1 73.78 ? OAA FSA 502 H 1 HETATM 4 C CAH FSA . . . F 3 10.239 -58.045 -48.948 1 85.09 ? CAH FSA 502 H 1 HETATM 5 S SAK FSA . . . F 3 9.298 -56.699 -49.64 1 62.32 ? SAK FSA 502 H 1 HETATM 6 C C1 FSA . . . F 3 10.751 -55.718 -50.121 1 60.32 ? C1 FSA 502 H 1 HETATM 7 C C2 FSA . . . F 3 10.967 -54.306 -49.602 1 58.89 ? C2 FSA 502 H 1 HETATM 8 O O2 FSA . . . F 3 11.626 -53.683 -50.592 1 76.82 ? O2 FSA 502 H 1 HETATM 9 C C3 FSA . . . F 3 11.81 -54.284 -48.373 1 59.6 ? C3 FSA 502 H 1 HETATM 10 O O3 FSA . . . F 3 13.137 -54.565 -48.748 1 79.58 ? O3 FSA 502 H 1 HETATM 11 C C4 FSA . . . F 3 11.845 -52.937 -47.712 1 50.59 ? C4 FSA 502 H 1 HETATM 12 O O4 FSA . . . F 3 12.076 -53.174 -46.398 1 75.13 ? O4 FSA 502 H 1 HETATM 13 C C5 FSA . . . F 3 10.569 -52.22 -47.704 1 51.72 ? C5 FSA 502 H 1 HETATM 14 O O5 FSA . . . F 3 9.745 -53.023 -47.065 1 86.71 ? O5 FSA 502 H 1 HETATM 15 C C6 FSA . . . F 3 10.048 -52.149 -49.036 1 49.84 ? C6 FSA 502 H 1 HETATM 16 O O6 FSA . . . F 3 9.861 -53.496 -49.458 1 69.45 ? O6 FSA 502 H 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #