data_6A7A # _model_server_result.job_id H-2dIlhEGroAbYSzDPLmfg _model_server_result.datetime_utc '2024-11-13 10:54:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6a7a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6A7A # _exptl.entry_id 6A7A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.32 _cell.angle_gamma 90 _cell.entry_id 6A7A _cell.length_a 39.124 _cell.length_b 83.517 _cell.length_c 48.938 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6A7A _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 283 n n PA O2A NAP sing 284 n n PA O5B NAP sing 285 n n PA O3 NAP sing 286 n n O2A HOA2 NAP sing 287 n n O5B C5B NAP sing 288 n n C5B C4B NAP sing 289 n n C5B H51A NAP sing 290 n n C5B H52A NAP sing 291 n n C4B O4B NAP sing 292 n n C4B C3B NAP sing 293 n n C4B H4B NAP sing 294 n n O4B C1B NAP sing 295 n n C3B O3B NAP sing 296 n n C3B C2B NAP sing 297 n n C3B H3B NAP sing 298 n n O3B HO3A NAP sing 299 n n C2B O2B NAP sing 300 n n C2B C1B NAP sing 301 n n C2B H2B NAP sing 302 n n O2B P2B NAP sing 303 n n C1B N9A NAP sing 304 n n C1B H1B NAP sing 305 n n N9A C8A NAP sing 306 n y N9A C4A NAP sing 307 n y C8A N7A NAP doub 308 n y C8A H8A NAP sing 309 n n N7A C5A NAP sing 310 n y C5A C6A NAP sing 311 n y C5A C4A NAP doub 312 n y C6A N6A NAP sing 313 n n C6A N1A NAP doub 314 n y N6A H61A NAP sing 315 n n N6A H62A NAP sing 316 n n N1A C2A NAP sing 317 n y C2A N3A NAP doub 318 n y C2A H2A NAP sing 319 n n N3A C4A NAP sing 320 n y O3 PN NAP sing 321 n n PN O1N NAP doub 322 n n PN O2N NAP sing 323 n n PN O5D NAP sing 324 n n O5D C5D NAP sing 325 n n C5D C4D NAP sing 326 n n C5D H51N NAP sing 327 n n C5D H52N NAP sing 328 n n C4D O4D NAP sing 329 n n C4D C3D NAP sing 330 n n C4D H4D NAP sing 331 n n O4D C1D NAP sing 332 n n C3D O3D NAP sing 333 n n C3D C2D NAP sing 334 n n C3D H3D NAP sing 335 n n O3D HO3N NAP sing 336 n n C2D O2D NAP sing 337 n n C2D C1D NAP sing 338 n n C2D H2D NAP sing 339 n n O2D HO2N NAP sing 340 n n C1D N1N NAP sing 341 n n C1D H1D NAP sing 342 n n N1N C2N NAP sing 343 n y N1N C6N NAP doub 344 n y C2N C3N NAP doub 345 n y C2N H2N NAP sing 346 n n C3N C7N NAP sing 347 n n C3N C4N NAP sing 348 n y C7N O7N NAP doub 349 n n C7N N7N NAP sing 350 n n N7N H71N NAP sing 351 n n N7N H72N NAP sing 352 n n C4N C5N NAP doub 353 n y C4N H4N NAP sing 354 n n C5N C6N NAP sing 355 n y C5N H5N NAP sing 356 n n C6N H6N NAP sing 357 n n P2B O1X NAP doub 358 n n P2B O2X NAP sing 359 n n P2B O3X NAP sing 360 n n O2X HOP2 NAP sing 361 n n O3X HOP3 NAP sing 362 n n # _atom_sites.entry_id 6A7A _atom_sites.fract_transf_matrix[1][1] 0.02556 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000143 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011974 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020435 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 401 325 NAP NAP . C 3 9S0 A 1 402 327 9S0 S18 . D 4 HOH A 1 501 119 HOH HOH . D 4 HOH A 2 502 20 HOH HOH . D 4 HOH A 3 503 91 HOH HOH . D 4 HOH A 4 504 142 HOH HOH . D 4 HOH A 5 505 24 HOH HOH . D 4 HOH A 6 506 50 HOH HOH . D 4 HOH A 7 507 71 HOH HOH . D 4 HOH A 8 508 80 HOH HOH . D 4 HOH A 9 509 74 HOH HOH . D 4 HOH A 10 510 107 HOH HOH . D 4 HOH A 11 511 61 HOH HOH . D 4 HOH A 12 512 115 HOH HOH . D 4 HOH A 13 513 27 HOH HOH . D 4 HOH A 14 514 42 HOH HOH . D 4 HOH A 15 515 62 HOH HOH . D 4 HOH A 16 516 128 HOH HOH . D 4 HOH A 17 517 7 HOH HOH . D 4 HOH A 18 518 93 HOH HOH . D 4 HOH A 19 519 8 HOH HOH . D 4 HOH A 20 520 48 HOH HOH . D 4 HOH A 21 521 157 HOH HOH . D 4 HOH A 22 522 96 HOH HOH . D 4 HOH A 23 523 34 HOH HOH . D 4 HOH A 24 524 82 HOH HOH . D 4 HOH A 25 525 29 HOH HOH . D 4 HOH A 26 526 57 HOH HOH . D 4 HOH A 27 527 106 HOH HOH . D 4 HOH A 28 528 5 HOH HOH . D 4 HOH A 29 529 4 HOH HOH . D 4 HOH A 30 530 11 HOH HOH . D 4 HOH A 31 531 1 HOH HOH . D 4 HOH A 32 532 15 HOH HOH . D 4 HOH A 33 533 3 HOH HOH . D 4 HOH A 34 534 2 HOH HOH . D 4 HOH A 35 535 94 HOH HOH . D 4 HOH A 36 536 131 HOH HOH . D 4 HOH A 37 537 41 HOH HOH . D 4 HOH A 38 538 54 HOH HOH . D 4 HOH A 39 539 37 HOH HOH . D 4 HOH A 40 540 32 HOH HOH . D 4 HOH A 41 541 79 HOH HOH . D 4 HOH A 42 542 16 HOH HOH . D 4 HOH A 43 543 122 HOH HOH . D 4 HOH A 44 544 23 HOH HOH . D 4 HOH A 45 545 67 HOH HOH . D 4 HOH A 46 546 92 HOH HOH . D 4 HOH A 47 547 72 HOH HOH . D 4 HOH A 48 548 31 HOH HOH . D 4 HOH A 49 549 38 HOH HOH . D 4 HOH A 50 550 81 HOH HOH . D 4 HOH A 51 551 46 HOH HOH . D 4 HOH A 52 552 30 HOH HOH . D 4 HOH A 53 553 6 HOH HOH . D 4 HOH A 54 554 84 HOH HOH . D 4 HOH A 55 555 39 HOH HOH . D 4 HOH A 56 556 52 HOH HOH . D 4 HOH A 57 557 53 HOH HOH . D 4 HOH A 58 558 56 HOH HOH . D 4 HOH A 59 559 132 HOH HOH . D 4 HOH A 60 560 66 HOH HOH . D 4 HOH A 61 561 154 HOH HOH . D 4 HOH A 62 562 43 HOH HOH . D 4 HOH A 63 563 133 HOH HOH . D 4 HOH A 64 564 47 HOH HOH . D 4 HOH A 65 565 110 HOH HOH . D 4 HOH A 66 566 126 HOH HOH . D 4 HOH A 67 567 51 HOH HOH . D 4 HOH A 68 568 83 HOH HOH . D 4 HOH A 69 569 49 HOH HOH . D 4 HOH A 70 570 134 HOH HOH . D 4 HOH A 71 571 35 HOH HOH . D 4 HOH A 72 572 40 HOH HOH . D 4 HOH A 73 573 68 HOH HOH . D 4 HOH A 74 574 76 HOH HOH . D 4 HOH A 75 575 58 HOH HOH . D 4 HOH A 76 576 17 HOH HOH . D 4 HOH A 77 577 69 HOH HOH . D 4 HOH A 78 578 18 HOH HOH . D 4 HOH A 79 579 109 HOH HOH . D 4 HOH A 80 580 28 HOH HOH . D 4 HOH A 81 581 102 HOH HOH . D 4 HOH A 82 582 14 HOH HOH . D 4 HOH A 83 583 99 HOH HOH . D 4 HOH A 84 584 55 HOH HOH . D 4 HOH A 85 585 75 HOH HOH . D 4 HOH A 86 586 100 HOH HOH . D 4 HOH A 87 587 150 HOH HOH . D 4 HOH A 88 588 10 HOH HOH . D 4 HOH A 89 589 13 HOH HOH . D 4 HOH A 90 590 87 HOH HOH . D 4 HOH A 91 591 60 HOH HOH . D 4 HOH A 92 592 123 HOH HOH . D 4 HOH A 93 593 153 HOH HOH . D 4 HOH A 94 594 121 HOH HOH . D 4 HOH A 95 595 9 HOH HOH . D 4 HOH A 96 596 85 HOH HOH . D 4 HOH A 97 597 135 HOH HOH . D 4 HOH A 98 598 127 HOH HOH . D 4 HOH A 99 599 73 HOH HOH . D 4 HOH A 100 600 63 HOH HOH . D 4 HOH A 101 601 12 HOH HOH . D 4 HOH A 102 602 26 HOH HOH . D 4 HOH A 103 603 36 HOH HOH . D 4 HOH A 104 604 64 HOH HOH . D 4 HOH A 105 605 19 HOH HOH . D 4 HOH A 106 606 77 HOH HOH . D 4 HOH A 107 607 59 HOH HOH . D 4 HOH A 108 608 117 HOH HOH . D 4 HOH A 109 609 44 HOH HOH . D 4 HOH A 110 610 90 HOH HOH . D 4 HOH A 111 611 151 HOH HOH . D 4 HOH A 112 612 45 HOH HOH . D 4 HOH A 113 613 95 HOH HOH . D 4 HOH A 114 614 120 HOH HOH . D 4 HOH A 115 615 25 HOH HOH . D 4 HOH A 116 616 149 HOH HOH . D 4 HOH A 117 617 65 HOH HOH . D 4 HOH A 118 618 139 HOH HOH . D 4 HOH A 119 619 116 HOH HOH . D 4 HOH A 120 620 146 HOH HOH . D 4 HOH A 121 621 143 HOH HOH . D 4 HOH A 122 622 147 HOH HOH . D 4 HOH A 123 623 78 HOH HOH . D 4 HOH A 124 624 113 HOH HOH . D 4 HOH A 125 625 112 HOH HOH . D 4 HOH A 126 626 88 HOH HOH . D 4 HOH A 127 627 21 HOH HOH . D 4 HOH A 128 628 140 HOH HOH . D 4 HOH A 129 629 33 HOH HOH . D 4 HOH A 130 630 103 HOH HOH . D 4 HOH A 131 631 105 HOH HOH . D 4 HOH A 132 632 130 HOH HOH . D 4 HOH A 133 633 148 HOH HOH . D 4 HOH A 134 634 118 HOH HOH . D 4 HOH A 135 635 138 HOH HOH . D 4 HOH A 136 636 114 HOH HOH . D 4 HOH A 137 637 86 HOH HOH . D 4 HOH A 138 638 97 HOH HOH . D 4 HOH A 139 639 145 HOH HOH . D 4 HOH A 140 640 161 HOH HOH . D 4 HOH A 141 641 137 HOH HOH . D 4 HOH A 142 642 141 HOH HOH . D 4 HOH A 143 643 104 HOH HOH . D 4 HOH A 144 644 108 HOH HOH . D 4 HOH A 145 645 144 HOH HOH . D 4 HOH A 146 646 101 HOH HOH . D 4 HOH A 147 647 70 HOH HOH . D 4 HOH A 148 648 89 HOH HOH . D 4 HOH A 149 649 22 HOH HOH . D 4 HOH A 150 650 155 HOH HOH . D 4 HOH A 151 651 156 HOH HOH . D 4 HOH A 152 652 136 HOH HOH . D 4 HOH A 153 653 111 HOH HOH . D 4 HOH A 154 654 152 HOH HOH . D 4 HOH A 155 655 125 HOH HOH . D 4 HOH A 156 656 159 HOH HOH . D 4 HOH A 157 657 158 HOH HOH . D 4 HOH A 158 658 160 HOH HOH . D 4 HOH A 159 659 98 HOH HOH . D 4 HOH A 160 660 124 HOH HOH . D 4 HOH A 161 661 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 9.198 0.933 45.511 1 12.78 ? PA NAP 401 A 1 HETATM 2 O O1A NAP . . . B 2 9.638 -0.421 45.104 1 14.47 ? O1A NAP 401 A 1 HETATM 3 O O2A NAP . . . B 2 10.36 1.876 45.805 1 15.43 ? O2A NAP 401 A 1 HETATM 4 O O5B NAP . . . B 2 8.284 1.672 44.398 1 19.56 ? O5B NAP 401 A 1 HETATM 5 C C5B NAP . . . B 2 6.893 1.303 44.326 1 18.75 ? C5B NAP 401 A 1 HETATM 6 C C4B NAP . . . B 2 6.197 2.274 43.408 1 17.39 ? C4B NAP 401 A 1 HETATM 7 O O4B NAP . . . B 2 6.99 2.45 42.211 1 16.76 ? O4B NAP 401 A 1 HETATM 8 C C3B NAP . . . B 2 4.818 1.819 42.946 1 17.02 ? C3B NAP 401 A 1 HETATM 9 O O3B NAP . . . B 2 3.904 2.902 43.009 1 22.17 ? O3B NAP 401 A 1 HETATM 10 C C2B NAP . . . B 2 5.026 1.378 41.501 1 15.47 ? C2B NAP 401 A 1 HETATM 11 O O2B NAP . . . B 2 3.835 1.606 40.723 1 15.31 ? O2B NAP 401 A 1 HETATM 12 C C1B NAP . . . B 2 6.203 2.235 41.054 1 14.82 ? C1B NAP 401 A 1 HETATM 13 N N9A NAP . . . B 2 7.045 1.609 40.038 1 18.25 ? N9A NAP 401 A 1 HETATM 14 C C8A NAP . . . B 2 7.449 0.297 40.003 1 17.62 ? C8A NAP 401 A 1 HETATM 15 N N7A NAP . . . B 2 8.23 0.007 38.994 1 17.86 ? N7A NAP 401 A 1 HETATM 16 C C5A NAP . . . B 2 8.34 1.202 38.298 1 14.52 ? C5A NAP 401 A 1 HETATM 17 C C6A NAP . . . B 2 8.963 1.537 37.088 1 16.61 ? C6A NAP 401 A 1 HETATM 18 N N6A NAP . . . B 2 9.669 0.672 36.352 1 14.12 ? N6A NAP 401 A 1 HETATM 19 N N1A NAP . . . B 2 8.811 2.801 36.632 1 19.09 ? N1A NAP 401 A 1 HETATM 20 C C2A NAP . . . B 2 8.085 3.662 37.356 1 16.19 ? C2A NAP 401 A 1 HETATM 21 N N3A NAP . . . B 2 7.457 3.464 38.519 1 16.53 ? N3A NAP 401 A 1 HETATM 22 C C4A NAP . . . B 2 7.614 2.199 38.939 1 18.02 ? C4A NAP 401 A 1 HETATM 23 O O3 NAP . . . B 2 8.186 0.912 46.739 1 16.89 ? O3 NAP 401 A 1 HETATM 24 P PN NAP . . . B 2 7.81 0.189 48.115 1 18.78 ? PN NAP 401 A 1 HETATM 25 O O1N NAP . . . B 2 6.527 -0.527 47.946 1 21.04 ? O1N NAP 401 A 1 HETATM 26 O O2N NAP . . . B 2 7.909 1.214 49.179 1 22.91 ? O2N NAP 401 A 1 HETATM 27 O O5D NAP . . . B 2 8.966 -0.894 48.294 1 17.17 ? O5D NAP 401 A 1 HETATM 28 C C5D NAP . . . B 2 8.905 -2.157 47.603 1 11.34 ? C5D NAP 401 A 1 HETATM 29 C C4D NAP . . . B 2 8.76 -3.311 48.569 1 14.74 ? C4D NAP 401 A 1 HETATM 30 O O4D NAP . . . B 2 9.728 -3.237 49.643 1 13.19 ? O4D NAP 401 A 1 HETATM 31 C C3D NAP . . . B 2 7.432 -3.467 49.289 1 12.56 ? C3D NAP 401 A 1 HETATM 32 O O3D NAP . . . B 2 6.423 -4.019 48.454 1 15.58 ? O3D NAP 401 A 1 HETATM 33 C C2D NAP . . . B 2 7.822 -4.425 50.41 1 17.73 ? C2D NAP 401 A 1 HETATM 34 O O2D NAP . . . B 2 7.993 -5.757 49.937 1 12.45 ? O2D NAP 401 A 1 HETATM 35 C C1D NAP . . . B 2 9.199 -3.872 50.789 1 12.58 ? C1D NAP 401 A 1 HETATM 36 N N1N NAP . . . B 2 9.154 -2.848 51.935 1 15.52 ? N1N NAP 401 A 1 HETATM 37 C C2N NAP . . . B 2 9.564 -3.299 53.134 1 11.52 ? C2N NAP 401 A 1 HETATM 38 C C3N NAP . . . B 2 9.562 -2.462 54.234 1 14.46 ? C3N NAP 401 A 1 HETATM 39 C C7N NAP . . . B 2 10.073 -2.942 55.574 1 14.35 ? C7N NAP 401 A 1 HETATM 40 O O7N NAP . . . B 2 10.586 -4.095 55.67 1 13.2 ? O7N NAP 401 A 1 HETATM 41 N N7N NAP . . . B 2 10.009 -2.098 56.596 1 11.34 ? N7N NAP 401 A 1 HETATM 42 C C4N NAP . . . B 2 9.127 -1.151 54.071 1 13.35 ? C4N NAP 401 A 1 HETATM 43 C C5N NAP . . . B 2 8.718 -0.707 52.827 1 12.92 ? C5N NAP 401 A 1 HETATM 44 C C6N NAP . . . B 2 8.741 -1.575 51.759 1 14.94 ? C6N NAP 401 A 1 HETATM 45 P P2B NAP . . . B 2 3.095 0.389 40.006 1 18.48 ? P2B NAP 401 A 1 HETATM 46 O O1X NAP . . . B 2 2.75 -0.675 41.024 1 16.64 ? O1X NAP 401 A 1 HETATM 47 O O2X NAP . . . B 2 1.87 1.011 39.365 1 20.07 ? O2X NAP 401 A 1 HETATM 48 O O3X NAP . . . B 2 4.035 -0.112 38.87 1 13.82 ? O3X NAP 401 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #