data_6A7S # _model_server_result.job_id dwa98i5L8QsFUPq7zSJm3Q _model_server_result.datetime_utc '2024-10-18 19:34:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6a7s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6A7S # _exptl.entry_id 6A7S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-galactopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6A7S _cell.length_a 91.235 _cell.length_b 91.235 _cell.length_c 48.791 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6A7S _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 0 32.527333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 B CYS 1 1_555 A SG CYS 68 B CYS 47 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? disulf ? disulf2 A SG CYS 23 B CYS 2 1_555 A SG CYS 157 B CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? disulf ? disulf3 A SG CYS 28 B CYS 7 1_555 A SG CYS 39 B CYS 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf4 A SG CYS 56 B CYS 35 1_555 A SG CYS 153 B CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf5 A SG CYS 125 B CYS 104 1_555 A SG CYS 144 B CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc1 A O THR 65 B THR 44 1_555 D CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc2 A OE1 GLU 67 B GLU 46 1_555 D CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc3 A OE1 GLU 71 B GLU 50 1_555 D CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? metalc ? metalc4 A OE2 GLU 71 B GLU 50 1_555 D CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc5 A OE1 GLU 154 B GLU 133 1_555 D CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? metalc ? metalc6 A OE2 GLU 154 B GLU 133 1_555 D CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc7 C O3 TRS . B TRS 202 1_555 D CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc8 D CA CA . B CA 203 1_555 F O HOH . B HOH 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NGA _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-galactopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NGA DGalpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NGA N-acetyl-b-D-galactopyranosamine 'COMMON NAME' GMML 1 NGA b-D-GalpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NGA GalNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6A7S _atom_sites.fract_transf_matrix[1][1] 0.010961 _atom_sites.fract_transf_matrix[1][2] 0.006328 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012656 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020496 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NGA B 1 201 1002 NGA NGA . C 3 TRS B 1 202 1001 TRS TRS . D 4 CA B 1 203 1003 CA CA . E 5 SO4 B 1 204 1 SO4 SO4 . F 6 HOH B 1 301 1 HOH HOH . F 6 HOH B 2 302 97 HOH HOH . F 6 HOH B 3 303 94 HOH HOH . F 6 HOH B 4 304 56 HOH HOH . F 6 HOH B 5 305 11 HOH HOH . F 6 HOH B 6 306 96 HOH HOH . F 6 HOH B 7 307 28 HOH HOH . F 6 HOH B 8 308 14 HOH HOH . F 6 HOH B 9 309 37 HOH HOH . F 6 HOH B 10 310 45 HOH HOH . F 6 HOH B 11 311 84 HOH HOH . F 6 HOH B 12 312 16 HOH HOH . F 6 HOH B 13 313 7 HOH HOH . F 6 HOH B 14 314 25 HOH HOH . F 6 HOH B 15 315 41 HOH HOH . F 6 HOH B 16 316 77 HOH HOH . F 6 HOH B 17 317 67 HOH HOH . F 6 HOH B 18 318 8 HOH HOH . F 6 HOH B 19 319 79 HOH HOH . F 6 HOH B 20 320 2 HOH HOH . F 6 HOH B 21 321 72 HOH HOH . F 6 HOH B 22 322 23 HOH HOH . F 6 HOH B 23 323 2 HOH HOH . F 6 HOH B 24 324 60 HOH HOH . F 6 HOH B 25 325 55 HOH HOH . F 6 HOH B 26 326 101 HOH HOH . F 6 HOH B 27 327 76 HOH HOH . F 6 HOH B 28 328 78 HOH HOH . F 6 HOH B 29 329 82 HOH HOH . F 6 HOH B 30 330 20 HOH HOH . F 6 HOH B 31 331 12 HOH HOH . F 6 HOH B 32 332 50 HOH HOH . F 6 HOH B 33 333 48 HOH HOH . F 6 HOH B 34 334 4 HOH HOH . F 6 HOH B 35 335 21 HOH HOH . F 6 HOH B 36 336 5 HOH HOH . F 6 HOH B 37 337 29 HOH HOH . F 6 HOH B 38 338 6 HOH HOH . F 6 HOH B 39 339 68 HOH HOH . F 6 HOH B 40 340 31 HOH HOH . F 6 HOH B 41 341 52 HOH HOH . F 6 HOH B 42 342 64 HOH HOH . F 6 HOH B 43 343 38 HOH HOH . F 6 HOH B 44 344 18 HOH HOH . F 6 HOH B 45 345 30 HOH HOH . F 6 HOH B 46 346 93 HOH HOH . F 6 HOH B 47 347 11 HOH HOH . F 6 HOH B 48 348 95 HOH HOH . F 6 HOH B 49 349 65 HOH HOH . F 6 HOH B 50 350 69 HOH HOH . F 6 HOH B 51 351 54 HOH HOH . F 6 HOH B 52 352 27 HOH HOH . F 6 HOH B 53 353 39 HOH HOH . F 6 HOH B 54 354 10 HOH HOH . F 6 HOH B 55 355 57 HOH HOH . F 6 HOH B 56 356 40 HOH HOH . F 6 HOH B 57 357 24 HOH HOH . F 6 HOH B 58 358 47 HOH HOH . F 6 HOH B 59 359 42 HOH HOH . F 6 HOH B 60 360 33 HOH HOH . F 6 HOH B 61 361 23 HOH HOH . F 6 HOH B 62 362 61 HOH HOH . F 6 HOH B 63 363 53 HOH HOH . F 6 HOH B 64 364 1 HOH HOH . F 6 HOH B 65 365 9 HOH HOH . F 6 HOH B 66 366 26 HOH HOH . F 6 HOH B 67 367 19 HOH HOH . F 6 HOH B 68 368 89 HOH HOH . F 6 HOH B 69 369 34 HOH HOH . F 6 HOH B 70 370 74 HOH HOH . F 6 HOH B 71 371 36 HOH HOH . F 6 HOH B 72 372 46 HOH HOH . F 6 HOH B 73 373 75 HOH HOH . F 6 HOH B 74 374 13 HOH HOH . F 6 HOH B 75 375 71 HOH HOH . F 6 HOH B 76 376 49 HOH HOH . F 6 HOH B 77 377 32 HOH HOH . F 6 HOH B 78 378 15 HOH HOH . F 6 HOH B 79 379 88 HOH HOH . F 6 HOH B 80 380 3 HOH HOH . F 6 HOH B 81 381 100 HOH HOH . F 6 HOH B 82 382 22 HOH HOH . F 6 HOH B 83 383 92 HOH HOH . F 6 HOH B 84 384 35 HOH HOH . F 6 HOH B 85 385 58 HOH HOH . F 6 HOH B 86 386 62 HOH HOH . F 6 HOH B 87 387 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NGA . . . B 2 49.727 -25.185 -0.857 1 33.65 ? C1 NGA 201 B 1 HETATM 2 C C2 NGA . . . B 2 50.295 -23.824 -0.43 1 29.4 ? C2 NGA 201 B 1 HETATM 3 C C3 NGA . . . B 2 51.762 -24.108 -0.726 1 30.7 ? C3 NGA 201 B 1 HETATM 4 C C4 NGA . . . B 2 52.169 -25.428 0 1 31.02 ? C4 NGA 201 B 1 HETATM 5 C C5 NGA . . . B 2 51.157 -26.562 -0.076 1 34.75 ? C5 NGA 201 B 1 HETATM 6 C C6 NGA . . . B 2 51.487 -27.914 0.61 1 39.71 ? C6 NGA 201 B 1 HETATM 7 C C7 NGA . . . B 2 49.654 -21.512 -0.944 1 32.91 ? C7 NGA 201 B 1 HETATM 8 C C8 NGA . . . B 2 49.359 -20.597 -2.124 1 36.58 ? C8 NGA 201 B 1 HETATM 9 N N2 NGA . . . B 2 49.891 -22.76 -1.321 1 30.98 ? N2 NGA 201 B 1 HETATM 10 O O1 NGA . . . B 2 48.676 -25.374 -1.763 1 44.32 ? O1 NGA 201 B 1 HETATM 11 O O3 NGA . . . B 2 52.559 -22.973 -0.424 1 32.7 ? O3 NGA 201 B 1 HETATM 12 O O4 NGA . . . B 2 52.393 -24.952 1.319 1 32.67 ? O4 NGA 201 B 1 HETATM 13 O O5 NGA . . . B 2 49.836 -26.049 0.271 1 37.82 ? O5 NGA 201 B 1 HETATM 14 O O6 NGA . . . B 2 52.713 -28.416 0.04 1 39.66 ? O6 NGA 201 B 1 HETATM 15 O O7 NGA . . . B 2 49.747 -21.141 0.202 1 33.09 ? O7 NGA 201 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #