data_6A7S
#
_model_server_result.job_id            kCwSR_LufCHdcXsvkf3-Iw 
_model_server_result.datetime_utc      '2024-12-02 08:56:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6a7s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    6A7S 
#
_exptl.entry_id    6A7S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-galactopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6A7S 
_cell.length_a            91.235 
_cell.length_b            91.235 
_cell.length_c            48.791 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6A7S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 0 32.527333 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 B CYS 1 1_555 A SG CYS 68 B CYS 47 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? 
disulf ? disulf2 A SG CYS 23 B CYS 2 1_555 A SG CYS 157 B CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
disulf ? disulf3 A SG CYS 28 B CYS 7 1_555 A SG CYS 39 B CYS 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
disulf ? disulf4 A SG CYS 56 B CYS 35 1_555 A SG CYS 153 B CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf5 A SG CYS 125 B CYS 104 1_555 A SG CYS 144 B CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc1 A O THR 65 B THR 44 1_555 D CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc2 A OE1 GLU 67 B GLU 46 1_555 D CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? 
metalc ? metalc3 A OE1 GLU 71 B GLU 50 1_555 D CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? 
metalc ? metalc4 A OE2 GLU 71 B GLU 50 1_555 D CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc5 A OE1 GLU 154 B GLU 133 1_555 D CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? 
metalc ? metalc6 A OE2 GLU 154 B GLU 133 1_555 D CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? 
metalc ? metalc7 C O3 TRS . B TRS 202 1_555 D CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? 
metalc ? metalc8 D CA CA . B CA 203 1_555 F O HOH . B HOH 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NGA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-galactopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-galactosamine;2-acetamido-2-deoxy-beta-D-galactose;2-acetamido-2-deoxy-D-galactose;2-acetamido-2-deoxy-galactose;N-ACETYL-D-GALACTOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NGA sing 237 n n 
C1 O1 NGA sing 238 n n 
C1 O5 NGA sing 239 n n 
C1 H1 NGA sing 240 n n 
C2 C3 NGA sing 241 n n 
C2 N2 NGA sing 242 n n 
C2 H2 NGA sing 243 n n 
C3 C4 NGA sing 244 n n 
C3 O3 NGA sing 245 n n 
C3 H3 NGA sing 246 n n 
C4 C5 NGA sing 247 n n 
C4 O4 NGA sing 248 n n 
C4 H4 NGA sing 249 n n 
C5 C6 NGA sing 250 n n 
C5 O5 NGA sing 251 n n 
C5 H5 NGA sing 252 n n 
C6 O6 NGA sing 253 n n 
C6 H61 NGA sing 254 n n 
C6 H62 NGA sing 255 n n 
C7 C8 NGA sing 256 n n 
C7 N2 NGA sing 257 n n 
C7 O7 NGA doub 258 n n 
C8 H81 NGA sing 259 n n 
C8 H82 NGA sing 260 n n 
C8 H83 NGA sing 261 n n 
N2 HN2 NGA sing 262 n n 
O1 HO1 NGA sing 263 n n 
O3 HO3 NGA sing 264 n n 
O4 HO4 NGA sing 265 n n 
O6 HO6 NGA sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NGA DGalpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NGA N-acetyl-b-D-galactopyranosamine 'COMMON NAME' GMML 1 
NGA b-D-GalpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NGA GalNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6A7S 
_atom_sites.fract_transf_matrix[1][1]    0.010961 
_atom_sites.fract_transf_matrix[1][2]    0.006328 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012656 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020496 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NGA B 1 201 1002 NGA NGA . 
C 3 TRS B 1 202 1001 TRS TRS . 
D 4 CA B 1 203 1003 CA CA . 
E 5 SO4 B 1 204 1 SO4 SO4 . 
F 6 HOH B 1 301 1 HOH HOH . 
F 6 HOH B 2 302 97 HOH HOH . 
F 6 HOH B 3 303 94 HOH HOH . 
F 6 HOH B 4 304 56 HOH HOH . 
F 6 HOH B 5 305 11 HOH HOH . 
F 6 HOH B 6 306 96 HOH HOH . 
F 6 HOH B 7 307 28 HOH HOH . 
F 6 HOH B 8 308 14 HOH HOH . 
F 6 HOH B 9 309 37 HOH HOH . 
F 6 HOH B 10 310 45 HOH HOH . 
F 6 HOH B 11 311 84 HOH HOH . 
F 6 HOH B 12 312 16 HOH HOH . 
F 6 HOH B 13 313 7 HOH HOH . 
F 6 HOH B 14 314 25 HOH HOH . 
F 6 HOH B 15 315 41 HOH HOH . 
F 6 HOH B 16 316 77 HOH HOH . 
F 6 HOH B 17 317 67 HOH HOH . 
F 6 HOH B 18 318 8 HOH HOH . 
F 6 HOH B 19 319 79 HOH HOH . 
F 6 HOH B 20 320 2 HOH HOH . 
F 6 HOH B 21 321 72 HOH HOH . 
F 6 HOH B 22 322 23 HOH HOH . 
F 6 HOH B 23 323 2 HOH HOH . 
F 6 HOH B 24 324 60 HOH HOH . 
F 6 HOH B 25 325 55 HOH HOH . 
F 6 HOH B 26 326 101 HOH HOH . 
F 6 HOH B 27 327 76 HOH HOH . 
F 6 HOH B 28 328 78 HOH HOH . 
F 6 HOH B 29 329 82 HOH HOH . 
F 6 HOH B 30 330 20 HOH HOH . 
F 6 HOH B 31 331 12 HOH HOH . 
F 6 HOH B 32 332 50 HOH HOH . 
F 6 HOH B 33 333 48 HOH HOH . 
F 6 HOH B 34 334 4 HOH HOH . 
F 6 HOH B 35 335 21 HOH HOH . 
F 6 HOH B 36 336 5 HOH HOH . 
F 6 HOH B 37 337 29 HOH HOH . 
F 6 HOH B 38 338 6 HOH HOH . 
F 6 HOH B 39 339 68 HOH HOH . 
F 6 HOH B 40 340 31 HOH HOH . 
F 6 HOH B 41 341 52 HOH HOH . 
F 6 HOH B 42 342 64 HOH HOH . 
F 6 HOH B 43 343 38 HOH HOH . 
F 6 HOH B 44 344 18 HOH HOH . 
F 6 HOH B 45 345 30 HOH HOH . 
F 6 HOH B 46 346 93 HOH HOH . 
F 6 HOH B 47 347 11 HOH HOH . 
F 6 HOH B 48 348 95 HOH HOH . 
F 6 HOH B 49 349 65 HOH HOH . 
F 6 HOH B 50 350 69 HOH HOH . 
F 6 HOH B 51 351 54 HOH HOH . 
F 6 HOH B 52 352 27 HOH HOH . 
F 6 HOH B 53 353 39 HOH HOH . 
F 6 HOH B 54 354 10 HOH HOH . 
F 6 HOH B 55 355 57 HOH HOH . 
F 6 HOH B 56 356 40 HOH HOH . 
F 6 HOH B 57 357 24 HOH HOH . 
F 6 HOH B 58 358 47 HOH HOH . 
F 6 HOH B 59 359 42 HOH HOH . 
F 6 HOH B 60 360 33 HOH HOH . 
F 6 HOH B 61 361 23 HOH HOH . 
F 6 HOH B 62 362 61 HOH HOH . 
F 6 HOH B 63 363 53 HOH HOH . 
F 6 HOH B 64 364 1 HOH HOH . 
F 6 HOH B 65 365 9 HOH HOH . 
F 6 HOH B 66 366 26 HOH HOH . 
F 6 HOH B 67 367 19 HOH HOH . 
F 6 HOH B 68 368 89 HOH HOH . 
F 6 HOH B 69 369 34 HOH HOH . 
F 6 HOH B 70 370 74 HOH HOH . 
F 6 HOH B 71 371 36 HOH HOH . 
F 6 HOH B 72 372 46 HOH HOH . 
F 6 HOH B 73 373 75 HOH HOH . 
F 6 HOH B 74 374 13 HOH HOH . 
F 6 HOH B 75 375 71 HOH HOH . 
F 6 HOH B 76 376 49 HOH HOH . 
F 6 HOH B 77 377 32 HOH HOH . 
F 6 HOH B 78 378 15 HOH HOH . 
F 6 HOH B 79 379 88 HOH HOH . 
F 6 HOH B 80 380 3 HOH HOH . 
F 6 HOH B 81 381 100 HOH HOH . 
F 6 HOH B 82 382 22 HOH HOH . 
F 6 HOH B 83 383 92 HOH HOH . 
F 6 HOH B 84 384 35 HOH HOH . 
F 6 HOH B 85 385 58 HOH HOH . 
F 6 HOH B 86 386 62 HOH HOH . 
F 6 HOH B 87 387 63 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NGA . . . B 2 49.727 -25.185 -0.857 1 33.65 ? C1 NGA 201 B 1 
HETATM 2 C C2 NGA . . . B 2 50.295 -23.824 -0.43 1 29.4 ? C2 NGA 201 B 1 
HETATM 3 C C3 NGA . . . B 2 51.762 -24.108 -0.726 1 30.7 ? C3 NGA 201 B 1 
HETATM 4 C C4 NGA . . . B 2 52.169 -25.428 0 1 31.02 ? C4 NGA 201 B 1 
HETATM 5 C C5 NGA . . . B 2 51.157 -26.562 -0.076 1 34.75 ? C5 NGA 201 B 1 
HETATM 6 C C6 NGA . . . B 2 51.487 -27.914 0.61 1 39.71 ? C6 NGA 201 B 1 
HETATM 7 C C7 NGA . . . B 2 49.654 -21.512 -0.944 1 32.91 ? C7 NGA 201 B 1 
HETATM 8 C C8 NGA . . . B 2 49.359 -20.597 -2.124 1 36.58 ? C8 NGA 201 B 1 
HETATM 9 N N2 NGA . . . B 2 49.891 -22.76 -1.321 1 30.98 ? N2 NGA 201 B 1 
HETATM 10 O O1 NGA . . . B 2 48.676 -25.374 -1.763 1 44.32 ? O1 NGA 201 B 1 
HETATM 11 O O3 NGA . . . B 2 52.559 -22.973 -0.424 1 32.7 ? O3 NGA 201 B 1 
HETATM 12 O O4 NGA . . . B 2 52.393 -24.952 1.319 1 32.67 ? O4 NGA 201 B 1 
HETATM 13 O O5 NGA . . . B 2 49.836 -26.049 0.271 1 37.82 ? O5 NGA 201 B 1 
HETATM 14 O O6 NGA . . . B 2 52.713 -28.416 0.04 1 39.66 ? O6 NGA 201 B 1 
HETATM 15 O O7 NGA . . . B 2 49.747 -21.141 0.202 1 33.09 ? O7 NGA 201 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           15 
#