data_6A84 # _model_server_result.job_id 59_IIOnXtoGBBPZNklLOdA _model_server_result.datetime_utc '2024-11-13 19:34:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6a84 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1204}' # _entry.id 6A84 # _exptl.entry_id 6A84 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6A84 _cell.length_a 66.804 _cell.length_b 66.804 _cell.length_c 115.905 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6A84 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 135 A CYS 1081 1_555 C ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc2 A ND1 HIS 138 A HIS 1084 1_555 C ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc3 A SG CYS 143 A CYS 1089 1_555 C ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc4 A SG CYS 146 A CYS 1092 1_555 C ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 182 n n C1 C2 GOL sing 183 n n C1 H11 GOL sing 184 n n C1 H12 GOL sing 185 n n O1 HO1 GOL sing 186 n n C2 O2 GOL sing 187 n n C2 C3 GOL sing 188 n n C2 H2 GOL sing 189 n n O2 HO2 GOL sing 190 n n C3 O3 GOL sing 191 n n C3 H31 GOL sing 192 n n C3 H32 GOL sing 193 n n O3 HO3 GOL sing 194 n n # _atom_sites.entry_id 6A84 _atom_sites.fract_transf_matrix[1][1] 0.014969 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014969 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008628 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 1201 1201 ZN ZN . D 4 9SU A 1 1202 1202 9SU XXX . E 5 PO4 A 1 1203 1203 PO4 PO4 . F 6 GOL A 1 1204 1204 GOL GOL . G 7 HOH A 1 1301 36 HOH HOH . G 7 HOH A 2 1302 33 HOH HOH . G 7 HOH A 3 1303 82 HOH HOH . G 7 HOH A 4 1304 140 HOH HOH . G 7 HOH A 5 1305 125 HOH HOH . G 7 HOH A 6 1306 123 HOH HOH . G 7 HOH A 7 1307 42 HOH HOH . G 7 HOH A 8 1308 7 HOH HOH . G 7 HOH A 9 1309 126 HOH HOH . G 7 HOH A 10 1310 85 HOH HOH . G 7 HOH A 11 1311 86 HOH HOH . G 7 HOH A 12 1312 128 HOH HOH . G 7 HOH A 13 1313 40 HOH HOH . G 7 HOH A 14 1314 87 HOH HOH . G 7 HOH A 15 1315 99 HOH HOH . G 7 HOH A 16 1316 168 HOH HOH . G 7 HOH A 17 1317 27 HOH HOH . G 7 HOH A 18 1318 115 HOH HOH . G 7 HOH A 19 1319 58 HOH HOH . G 7 HOH A 20 1320 13 HOH HOH . G 7 HOH A 21 1321 24 HOH HOH . G 7 HOH A 22 1322 25 HOH HOH . G 7 HOH A 23 1323 47 HOH HOH . G 7 HOH A 24 1324 20 HOH HOH . G 7 HOH A 25 1325 84 HOH HOH . G 7 HOH A 26 1326 70 HOH HOH . G 7 HOH A 27 1327 8 HOH HOH . G 7 HOH A 28 1328 119 HOH HOH . G 7 HOH A 29 1329 44 HOH HOH . G 7 HOH A 30 1330 59 HOH HOH . G 7 HOH A 31 1331 39 HOH HOH . G 7 HOH A 32 1332 21 HOH HOH . G 7 HOH A 33 1333 43 HOH HOH . G 7 HOH A 34 1334 75 HOH HOH . G 7 HOH A 35 1335 35 HOH HOH . G 7 HOH A 36 1336 14 HOH HOH . G 7 HOH A 37 1337 132 HOH HOH . G 7 HOH A 38 1338 102 HOH HOH . G 7 HOH A 39 1339 9 HOH HOH . G 7 HOH A 40 1340 61 HOH HOH . G 7 HOH A 41 1341 113 HOH HOH . G 7 HOH A 42 1342 60 HOH HOH . G 7 HOH A 43 1343 83 HOH HOH . G 7 HOH A 44 1344 48 HOH HOH . G 7 HOH A 45 1345 31 HOH HOH . G 7 HOH A 46 1346 3 HOH HOH . G 7 HOH A 47 1347 124 HOH HOH . G 7 HOH A 48 1348 55 HOH HOH . G 7 HOH A 49 1349 130 HOH HOH . G 7 HOH A 50 1350 56 HOH HOH . G 7 HOH A 51 1351 81 HOH HOH . G 7 HOH A 52 1352 114 HOH HOH . G 7 HOH A 53 1353 5 HOH HOH . G 7 HOH A 54 1354 159 HOH HOH . G 7 HOH A 55 1355 106 HOH HOH . G 7 HOH A 56 1356 105 HOH HOH . G 7 HOH A 57 1357 54 HOH HOH . G 7 HOH A 58 1358 22 HOH HOH . G 7 HOH A 59 1359 89 HOH HOH . G 7 HOH A 60 1360 120 HOH HOH . G 7 HOH A 61 1361 45 HOH HOH . G 7 HOH A 62 1362 50 HOH HOH . G 7 HOH A 63 1363 80 HOH HOH . G 7 HOH A 64 1364 73 HOH HOH . G 7 HOH A 65 1365 150 HOH HOH . G 7 HOH A 66 1366 93 HOH HOH . G 7 HOH A 67 1367 108 HOH HOH . G 7 HOH A 68 1368 77 HOH HOH . G 7 HOH A 69 1369 52 HOH HOH . G 7 HOH A 70 1370 4 HOH HOH . G 7 HOH A 71 1371 76 HOH HOH . G 7 HOH A 72 1372 100 HOH HOH . G 7 HOH A 73 1373 19 HOH HOH . G 7 HOH A 74 1374 11 HOH HOH . G 7 HOH A 75 1375 29 HOH HOH . G 7 HOH A 76 1376 63 HOH HOH . G 7 HOH A 77 1377 12 HOH HOH . G 7 HOH A 78 1378 112 HOH HOH . G 7 HOH A 79 1379 103 HOH HOH . G 7 HOH A 80 1380 143 HOH HOH . G 7 HOH A 81 1381 111 HOH HOH . G 7 HOH A 82 1382 23 HOH HOH . G 7 HOH A 83 1383 26 HOH HOH . G 7 HOH A 84 1384 37 HOH HOH . G 7 HOH A 85 1385 72 HOH HOH . G 7 HOH A 86 1386 79 HOH HOH . G 7 HOH A 87 1387 30 HOH HOH . G 7 HOH A 88 1388 64 HOH HOH . G 7 HOH A 89 1389 161 HOH HOH . G 7 HOH A 90 1390 53 HOH HOH . G 7 HOH A 91 1391 107 HOH HOH . G 7 HOH A 92 1392 110 HOH HOH . G 7 HOH A 93 1393 17 HOH HOH . G 7 HOH A 94 1394 62 HOH HOH . G 7 HOH A 95 1395 66 HOH HOH . G 7 HOH A 96 1396 49 HOH HOH . G 7 HOH A 97 1397 68 HOH HOH . G 7 HOH A 98 1398 101 HOH HOH . G 7 HOH A 99 1399 74 HOH HOH . G 7 HOH A 100 1400 148 HOH HOH . G 7 HOH A 101 1401 122 HOH HOH . G 7 HOH A 102 1402 145 HOH HOH . G 7 HOH A 103 1403 147 HOH HOH . G 7 HOH A 104 1404 144 HOH HOH . G 7 HOH A 105 1405 91 HOH HOH . G 7 HOH A 106 1406 88 HOH HOH . G 7 HOH A 107 1407 95 HOH HOH . G 7 HOH A 108 1408 157 HOH HOH . G 7 HOH A 109 1409 98 HOH HOH . G 7 HOH A 110 1410 121 HOH HOH . G 7 HOH A 111 1411 151 HOH HOH . G 7 HOH A 112 1412 154 HOH HOH . G 7 HOH A 113 1413 96 HOH HOH . G 7 HOH A 114 1414 65 HOH HOH . G 7 HOH A 115 1415 136 HOH HOH . G 7 HOH A 116 1416 71 HOH HOH . G 7 HOH A 117 1417 134 HOH HOH . G 7 HOH A 118 1418 116 HOH HOH . G 7 HOH A 119 1419 156 HOH HOH . H 7 HOH B 1 1201 1 HOH HOH . H 7 HOH B 2 1202 34 HOH HOH . H 7 HOH B 3 1203 46 HOH HOH . H 7 HOH B 4 1204 78 HOH HOH . H 7 HOH B 5 1205 32 HOH HOH . H 7 HOH B 6 1206 15 HOH HOH . H 7 HOH B 7 1207 51 HOH HOH . H 7 HOH B 8 1208 41 HOH HOH . H 7 HOH B 9 1209 28 HOH HOH . H 7 HOH B 10 1210 10 HOH HOH . H 7 HOH B 11 1211 6 HOH HOH . H 7 HOH B 12 1212 38 HOH HOH . H 7 HOH B 13 1213 16 HOH HOH . H 7 HOH B 14 1214 69 HOH HOH . H 7 HOH B 15 1215 2 HOH HOH . H 7 HOH B 16 1216 57 HOH HOH . H 7 HOH B 17 1217 18 HOH HOH . H 7 HOH B 18 1218 94 HOH HOH . H 7 HOH B 19 1219 149 HOH HOH . H 7 HOH B 20 1220 139 HOH HOH . H 7 HOH B 21 1221 141 HOH HOH . H 7 HOH B 22 1222 155 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 6 9.735 -12.655 -13.012 1 60.15 ? C1 GOL 1204 A 1 HETATM 2 O O1 GOL . . . F 6 10.968 -12.202 -12.523 1 51.29 ? O1 GOL 1204 A 1 HETATM 3 C C2 GOL . . . F 6 9.814 -12.775 -14.553 1 64.83 ? C2 GOL 1204 A 1 HETATM 4 O O2 GOL . . . F 6 10.026 -11.549 -15.185 1 62.71 ? O2 GOL 1204 A 1 HETATM 5 C C3 GOL . . . F 6 10.922 -13.816 -14.854 1 68.31 ? C3 GOL 1204 A 1 HETATM 6 O O3 GOL . . . F 6 10.337 -14.808 -15.631 1 72.16 ? O3 GOL 1204 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 665 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #