data_6A86
#
_model_server_result.job_id            2J4XZBHo9t7xQXzS037rcw 
_model_server_result.datetime_utc      '2024-12-02 21:00:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6a86 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":102}' 
#
_entry.id    6A86 
#
_exptl.entry_id    6A86 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              90.121 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3R)-butane-1,3-diol 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6A86 
_cell.length_a            145.28 
_cell.length_b            145.28 
_cell.length_c            39.625 
_cell.Z_PDB               54 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6A86 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,I,K,L,M 1 1 
D,E,F,J,N,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 10 A CYS 10 1_555 A SG CYS 17 A CYS 17 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf2 D SG CYS 10 D CYS 10 1_555 D SG CYS 17 D CYS 17 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.853 ? 
disulf ? disulf3 E SG CYS 10 E CYS 10 1_555 E SG CYS 17 E CYS 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
disulf ? disulf4 F SG CYS 10 F CYS 10 1_555 F SG CYS 17 F CYS 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
#
_chem_comp.formula           'C4 H10 O2' 
_chem_comp.formula_weight    90.121 
_chem_comp.id                BU4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3R)-butane-1,3-diol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 BU4 sing 28 n n 
C1 C2 BU4 sing 29 n n 
C2 C3 BU4 sing 30 n n 
C3 O3 BU4 sing 31 n n 
C3 C4 BU4 sing 32 n n 
C1 H1 BU4 sing 33 n n 
C1 H1A BU4 sing 34 n n 
O1 HO1 BU4 sing 35 n n 
C2 H2 BU4 sing 36 n n 
C2 H2A BU4 sing 37 n n 
C3 H3 BU4 sing 38 n n 
O3 HO3 BU4 sing 39 n n 
C4 H4 BU4 sing 40 n n 
C4 H4A BU4 sing 41 n n 
C4 H4B BU4 sing 42 n n 
#
_atom_sites.entry_id                     6A86 
_atom_sites.fract_transf_matrix[1][1]    0.006883 
_atom_sites.fract_transf_matrix[1][2]    0.003974 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007948 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025237 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 BU4 A 1 101 101 BU4 BU4 . 
H 2 BU4 A 1 102 101 BU4 BU4 . 
I 2 BU4 B 1 101 101 BU4 BU4 . 
J 2 BU4 F 1 101 101 BU4 BU4 . 
K 3 HOH A 1 201 14 HOH HOH . 
K 3 HOH A 2 202 56 HOH HOH . 
K 3 HOH A 3 203 42 HOH HOH . 
K 3 HOH A 4 204 148 HOH HOH . 
K 3 HOH A 5 205 17 HOH HOH . 
K 3 HOH A 6 206 37 HOH HOH . 
K 3 HOH A 7 207 17 HOH HOH . 
K 3 HOH A 8 208 1 HOH HOH . 
K 3 HOH A 9 209 22 HOH HOH . 
K 3 HOH A 10 210 7 HOH HOH . 
K 3 HOH A 11 211 31 HOH HOH . 
K 3 HOH A 12 212 10 HOH HOH . 
K 3 HOH A 13 213 43 HOH HOH . 
K 3 HOH A 14 214 22 HOH HOH . 
K 3 HOH A 15 215 48 HOH HOH . 
K 3 HOH A 16 216 136 HOH HOH . 
K 3 HOH A 17 217 72 HOH HOH . 
K 3 HOH A 18 218 94 HOH HOH . 
K 3 HOH A 19 219 150 HOH HOH . 
K 3 HOH A 20 220 27 HOH HOH . 
K 3 HOH A 21 221 34 HOH HOH . 
K 3 HOH A 22 222 77 HOH HOH . 
K 3 HOH A 23 223 124 HOH HOH . 
K 3 HOH A 24 224 39 HOH HOH . 
K 3 HOH A 25 225 66 HOH HOH . 
K 3 HOH A 26 226 42 HOH HOH . 
K 3 HOH A 27 227 55 HOH HOH . 
K 3 HOH A 28 228 1 HOH HOH . 
K 3 HOH A 29 229 132 HOH HOH . 
K 3 HOH A 30 230 18 HOH HOH . 
K 3 HOH A 31 231 59 HOH HOH . 
K 3 HOH A 32 232 60 HOH HOH . 
K 3 HOH A 33 233 49 HOH HOH . 
K 3 HOH A 34 234 97 HOH HOH . 
K 3 HOH A 35 235 158 HOH HOH . 
K 3 HOH A 36 236 35 HOH HOH . 
L 3 HOH B 1 201 17 HOH HOH . 
L 3 HOH B 2 202 85 HOH HOH . 
L 3 HOH B 3 203 53 HOH HOH . 
L 3 HOH B 4 204 47 HOH HOH . 
L 3 HOH B 5 205 57 HOH HOH . 
L 3 HOH B 6 206 133 HOH HOH . 
L 3 HOH B 7 207 52 HOH HOH . 
L 3 HOH B 8 208 41 HOH HOH . 
L 3 HOH B 9 209 107 HOH HOH . 
L 3 HOH B 10 210 3 HOH HOH . 
L 3 HOH B 11 211 92 HOH HOH . 
L 3 HOH B 12 212 74 HOH HOH . 
L 3 HOH B 13 213 122 HOH HOH . 
L 3 HOH B 14 214 31 HOH HOH . 
L 3 HOH B 15 215 11 HOH HOH . 
L 3 HOH B 16 216 35 HOH HOH . 
L 3 HOH B 17 217 48 HOH HOH . 
L 3 HOH B 18 218 2 HOH HOH . 
L 3 HOH B 19 219 29 HOH HOH . 
L 3 HOH B 20 220 96 HOH HOH . 
L 3 HOH B 21 221 18 HOH HOH . 
L 3 HOH B 22 222 33 HOH HOH . 
L 3 HOH B 23 223 8 HOH HOH . 
L 3 HOH B 24 224 142 HOH HOH . 
L 3 HOH B 25 225 20 HOH HOH . 
L 3 HOH B 26 226 61 HOH HOH . 
L 3 HOH B 27 227 9 HOH HOH . 
L 3 HOH B 28 228 23 HOH HOH . 
L 3 HOH B 29 229 93 HOH HOH . 
L 3 HOH B 30 230 104 HOH HOH . 
L 3 HOH B 31 231 26 HOH HOH . 
L 3 HOH B 32 232 95 HOH HOH . 
L 3 HOH B 33 233 50 HOH HOH . 
L 3 HOH B 34 234 57 HOH HOH . 
L 3 HOH B 35 235 102 HOH HOH . 
L 3 HOH B 36 236 44 HOH HOH . 
L 3 HOH B 37 237 27 HOH HOH . 
L 3 HOH B 38 238 30 HOH HOH . 
L 3 HOH B 39 239 116 HOH HOH . 
L 3 HOH B 40 240 100 HOH HOH . 
L 3 HOH B 41 241 135 HOH HOH . 
L 3 HOH B 42 242 82 HOH HOH . 
L 3 HOH B 43 243 91 HOH HOH . 
L 3 HOH B 44 244 67 HOH HOH . 
L 3 HOH B 45 245 114 HOH HOH . 
L 3 HOH B 46 246 123 HOH HOH . 
M 3 HOH C 1 101 6 HOH HOH . 
M 3 HOH C 2 102 151 HOH HOH . 
M 3 HOH C 3 103 5 HOH HOH . 
M 3 HOH C 4 104 78 HOH HOH . 
M 3 HOH C 5 105 59 HOH HOH . 
M 3 HOH C 6 106 36 HOH HOH . 
M 3 HOH C 7 107 1 HOH HOH . 
M 3 HOH C 8 108 109 HOH HOH . 
M 3 HOH C 9 109 73 HOH HOH . 
M 3 HOH C 10 110 143 HOH HOH . 
M 3 HOH C 11 111 10 HOH HOH . 
M 3 HOH C 12 112 39 HOH HOH . 
M 3 HOH C 13 113 115 HOH HOH . 
M 3 HOH C 14 114 19 HOH HOH . 
M 3 HOH C 15 115 58 HOH HOH . 
M 3 HOH C 16 116 87 HOH HOH . 
M 3 HOH C 17 117 21 HOH HOH . 
M 3 HOH C 18 118 28 HOH HOH . 
M 3 HOH C 19 119 46 HOH HOH . 
M 3 HOH C 20 120 53 HOH HOH . 
M 3 HOH C 21 121 83 HOH HOH . 
M 3 HOH C 22 122 19 HOH HOH . 
M 3 HOH C 23 123 34 HOH HOH . 
M 3 HOH C 24 124 18 HOH HOH . 
M 3 HOH C 25 125 40 HOH HOH . 
M 3 HOH C 26 126 120 HOH HOH . 
M 3 HOH C 27 127 69 HOH HOH . 
M 3 HOH C 28 128 30 HOH HOH . 
M 3 HOH C 29 129 117 HOH HOH . 
M 3 HOH C 30 130 27 HOH HOH . 
M 3 HOH C 31 131 101 HOH HOH . 
M 3 HOH C 32 132 152 HOH HOH . 
M 3 HOH C 33 133 125 HOH HOH . 
N 3 HOH D 1 101 4 HOH HOH . 
N 3 HOH D 2 102 159 HOH HOH . 
N 3 HOH D 3 103 9 HOH HOH . 
N 3 HOH D 4 104 112 HOH HOH . 
N 3 HOH D 5 105 99 HOH HOH . 
N 3 HOH D 6 106 4 HOH HOH . 
N 3 HOH D 7 107 51 HOH HOH . 
N 3 HOH D 8 108 33 HOH HOH . 
N 3 HOH D 9 109 16 HOH HOH . 
N 3 HOH D 10 110 32 HOH HOH . 
N 3 HOH D 11 111 139 HOH HOH . 
N 3 HOH D 12 112 76 HOH HOH . 
N 3 HOH D 13 113 14 HOH HOH . 
N 3 HOH D 14 114 64 HOH HOH . 
N 3 HOH D 15 115 118 HOH HOH . 
N 3 HOH D 16 116 26 HOH HOH . 
N 3 HOH D 17 117 108 HOH HOH . 
N 3 HOH D 18 118 6 HOH HOH . 
N 3 HOH D 19 119 26 HOH HOH . 
N 3 HOH D 20 120 15 HOH HOH . 
N 3 HOH D 21 121 65 HOH HOH . 
N 3 HOH D 22 122 60 HOH HOH . 
N 3 HOH D 23 123 131 HOH HOH . 
N 3 HOH D 24 124 13 HOH HOH . 
N 3 HOH D 25 125 134 HOH HOH . 
N 3 HOH D 26 126 45 HOH HOH . 
N 3 HOH D 27 127 129 HOH HOH . 
N 3 HOH D 28 128 106 HOH HOH . 
N 3 HOH D 29 129 21 HOH HOH . 
N 3 HOH D 30 130 68 HOH HOH . 
N 3 HOH D 31 131 157 HOH HOH . 
N 3 HOH D 32 132 156 HOH HOH . 
N 3 HOH D 33 133 154 HOH HOH . 
O 3 HOH E 1 101 119 HOH HOH . 
O 3 HOH E 2 102 103 HOH HOH . 
O 3 HOH E 3 103 2 HOH HOH . 
O 3 HOH E 4 104 13 HOH HOH . 
O 3 HOH E 5 105 54 HOH HOH . 
O 3 HOH E 6 106 3 HOH HOH . 
O 3 HOH E 7 107 32 HOH HOH . 
O 3 HOH E 8 108 71 HOH HOH . 
O 3 HOH E 9 109 160 HOH HOH . 
O 3 HOH E 10 110 35 HOH HOH . 
O 3 HOH E 11 111 121 HOH HOH . 
O 3 HOH E 12 112 38 HOH HOH . 
O 3 HOH E 13 113 128 HOH HOH . 
O 3 HOH E 14 114 10 HOH HOH . 
O 3 HOH E 15 115 89 HOH HOH . 
O 3 HOH E 16 116 84 HOH HOH . 
P 3 HOH F 1 201 98 HOH HOH . 
P 3 HOH F 2 202 19 HOH HOH . 
P 3 HOH F 3 203 113 HOH HOH . 
P 3 HOH F 4 204 44 HOH HOH . 
P 3 HOH F 5 205 62 HOH HOH . 
P 3 HOH F 6 206 11 HOH HOH . 
P 3 HOH F 7 207 25 HOH HOH . 
P 3 HOH F 8 208 24 HOH HOH . 
P 3 HOH F 9 209 111 HOH HOH . 
P 3 HOH F 10 210 52 HOH HOH . 
P 3 HOH F 11 211 79 HOH HOH . 
P 3 HOH F 12 212 80 HOH HOH . 
P 3 HOH F 13 213 36 HOH HOH . 
P 3 HOH F 14 214 149 HOH HOH . 
P 3 HOH F 15 215 6 HOH HOH . 
P 3 HOH F 16 216 25 HOH HOH . 
P 3 HOH F 17 217 140 HOH HOH . 
P 3 HOH F 18 218 146 HOH HOH . 
P 3 HOH F 19 219 55 HOH HOH . 
P 3 HOH F 20 220 90 HOH HOH . 
P 3 HOH F 21 221 126 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BU4 . . . H 2 -32.601 -10.367 -7.99 1 66.79 ? C1 BU4 102 A 1 
HETATM 2 O O1 BU4 . . . H 2 -31.623 -9.993 -9.01 1 72.63 ? O1 BU4 102 A 1 
HETATM 3 C C2 BU4 . . . H 2 -33.867 -9.484 -7.87 1 49.59 ? C2 BU4 102 A 1 
HETATM 4 C C3 BU4 . . . H 2 -33.62 -8.077 -8.397 1 48.75 ? C3 BU4 102 A 1 
HETATM 5 O O3 BU4 . . . H 2 -34.32 -7.037 -7.725 1 52.35 ? O3 BU4 102 A 1 
HETATM 6 C C4 BU4 . . . H 2 -34.035 -8.038 -9.871 1 31.32 ? C4 BU4 102 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           6 
#