data_6A8B
#
_model_server_result.job_id            QuYakXbUGIa_L0jgOfcIqw 
_model_server_result.datetime_utc      '2024-11-16 17:50:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6a8b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":403}' 
#
_entry.id    6A8B 
#
_exptl.entry_id    6A8B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6A8B 
_cell.length_a            100.395 
_cell.length_b            100.395 
_cell.length_c            125.785 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6A8B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ALA 87 A ALA 67 1_555 K NA NA . A NA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc2 A O GLY 112 A GLY 92 1_555 K NA NA . A NA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? 
metalc ? metalc3 A OE1 GLU 155 A GLU 135 1_555 K NA NA . A NA 409 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.026 ? 
metalc ? metalc4 A OE2 GLU 155 A GLU 135 1_555 K NA NA . A NA 409 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? 
metalc ? metalc5 A O ASP 292 A ASP 272 1_555 L NA NA . A NA 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc6 A O SER 328 A SER 308 1_555 L NA NA . A NA 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc7 A O ARG 331 A ARG 311 1_555 L NA NA . A NA 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
metalc ? metalc8 A OG SER 337 A SER 317 1_555 L NA NA . A NA 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? 
metalc ? metalc9 B O ALA 87 B ALA 67 1_555 R NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? 
metalc ? metalc10 B O GLY 112 B GLY 92 1_555 R NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc11 B OE1 GLU 155 B GLU 135 1_555 R NA NA . B NA 406 5_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.99 ? 
metalc ? metalc12 B OE2 GLU 155 B GLU 135 1_555 R NA NA . B NA 406 5_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? 
metalc ? metalc13 B O ASP 292 B ASP 272 1_555 T NA NA . B NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? 
metalc ? metalc14 B O SER 328 B SER 308 1_555 T NA NA . B NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc15 B O ARG 331 B ARG 311 1_555 T NA NA . B NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? 
metalc ? metalc16 B OG SER 337 B SER 317 1_555 T NA NA . B NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 180 n n 
C1 C2 GOL sing 181 n n 
C1 H11 GOL sing 182 n n 
C1 H12 GOL sing 183 n n 
O1 HO1 GOL sing 184 n n 
C2 O2 GOL sing 185 n n 
C2 C3 GOL sing 186 n n 
C2 H2 GOL sing 187 n n 
O2 HO2 GOL sing 188 n n 
C3 O3 GOL sing 189 n n 
C3 H31 GOL sing 190 n n 
C3 H32 GOL sing 191 n n 
O3 HO3 GOL sing 192 n n 
#
_atom_sites.entry_id                     6A8B 
_atom_sites.fract_transf_matrix[1][1]    0.009961 
_atom_sites.fract_transf_matrix[1][2]    0.005751 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011502 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00795 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ACP A 1 401 401 ACP ACP . 
D 3 GOL A 1 402 501 GOL GOL . 
E 3 GOL A 1 403 601 GOL GOL . 
F 3 GOL A 1 404 701 GOL GOL . 
G 4 CL A 1 405 1 CL CL . 
H 4 CL A 1 406 5 CL CL . 
I 4 CL A 1 407 6 CL CL . 
J 5 NA A 1 408 3 NA NA . 
K 5 NA A 1 409 4 NA NA . 
L 5 NA A 1 410 5 NA NA . 
M 2 ACP B 1 401 401 ACP ACP . 
N 4 CL B 1 402 2 CL CL . 
O 4 CL B 1 403 3 CL CL . 
P 4 CL B 1 404 4 CL CL . 
Q 4 CL B 1 405 7 CL CL . 
R 5 NA B 1 406 1 NA NA . 
S 5 NA B 1 407 2 NA NA . 
T 5 NA B 1 408 6 NA NA . 
U 6 HOH A 1 501 151 HOH HOH . 
U 6 HOH A 2 502 136 HOH HOH . 
U 6 HOH A 3 503 106 HOH HOH . 
U 6 HOH A 4 504 156 HOH HOH . 
U 6 HOH A 5 505 75 HOH HOH . 
U 6 HOH A 6 506 14 HOH HOH . 
U 6 HOH A 7 507 148 HOH HOH . 
U 6 HOH A 8 508 52 HOH HOH . 
U 6 HOH A 9 509 158 HOH HOH . 
U 6 HOH A 10 510 98 HOH HOH . 
U 6 HOH A 11 511 54 HOH HOH . 
U 6 HOH A 12 512 84 HOH HOH . 
U 6 HOH A 13 513 74 HOH HOH . 
U 6 HOH A 14 514 67 HOH HOH . 
U 6 HOH A 15 515 61 HOH HOH . 
U 6 HOH A 16 516 51 HOH HOH . 
U 6 HOH A 17 517 62 HOH HOH . 
U 6 HOH A 18 518 96 HOH HOH . 
U 6 HOH A 19 519 97 HOH HOH . 
U 6 HOH A 20 520 91 HOH HOH . 
U 6 HOH A 21 521 4 HOH HOH . 
U 6 HOH A 22 522 130 HOH HOH . 
U 6 HOH A 23 523 99 HOH HOH . 
U 6 HOH A 24 524 6 HOH HOH . 
U 6 HOH A 25 525 7 HOH HOH . 
U 6 HOH A 26 526 23 HOH HOH . 
U 6 HOH A 27 527 137 HOH HOH . 
U 6 HOH A 28 528 9 HOH HOH . 
U 6 HOH A 29 529 21 HOH HOH . 
U 6 HOH A 30 530 102 HOH HOH . 
U 6 HOH A 31 531 15 HOH HOH . 
U 6 HOH A 32 532 80 HOH HOH . 
U 6 HOH A 33 533 120 HOH HOH . 
U 6 HOH A 34 534 30 HOH HOH . 
U 6 HOH A 35 535 108 HOH HOH . 
U 6 HOH A 36 536 149 HOH HOH . 
U 6 HOH A 37 537 3 HOH HOH . 
U 6 HOH A 38 538 5 HOH HOH . 
U 6 HOH A 39 539 117 HOH HOH . 
U 6 HOH A 40 540 87 HOH HOH . 
U 6 HOH A 41 541 90 HOH HOH . 
U 6 HOH A 42 542 8 HOH HOH . 
U 6 HOH A 43 543 118 HOH HOH . 
U 6 HOH A 44 544 116 HOH HOH . 
U 6 HOH A 45 545 76 HOH HOH . 
U 6 HOH A 46 546 132 HOH HOH . 
U 6 HOH A 47 547 114 HOH HOH . 
U 6 HOH A 48 548 26 HOH HOH . 
U 6 HOH A 49 549 63 HOH HOH . 
U 6 HOH A 50 550 49 HOH HOH . 
U 6 HOH A 51 551 38 HOH HOH . 
U 6 HOH A 52 552 86 HOH HOH . 
U 6 HOH A 53 553 34 HOH HOH . 
U 6 HOH A 54 554 115 HOH HOH . 
U 6 HOH A 55 555 40 HOH HOH . 
U 6 HOH A 56 556 109 HOH HOH . 
U 6 HOH A 57 557 59 HOH HOH . 
U 6 HOH A 58 558 35 HOH HOH . 
U 6 HOH A 59 559 71 HOH HOH . 
U 6 HOH A 60 560 37 HOH HOH . 
U 6 HOH A 61 561 121 HOH HOH . 
U 6 HOH A 62 562 129 HOH HOH . 
U 6 HOH A 63 563 153 HOH HOH . 
U 6 HOH A 64 564 104 HOH HOH . 
U 6 HOH A 65 565 19 HOH HOH . 
U 6 HOH A 66 566 20 HOH HOH . 
U 6 HOH A 67 567 105 HOH HOH . 
U 6 HOH A 68 568 16 HOH HOH . 
U 6 HOH A 69 569 68 HOH HOH . 
U 6 HOH A 70 570 83 HOH HOH . 
U 6 HOH A 71 571 53 HOH HOH . 
U 6 HOH A 72 572 17 HOH HOH . 
U 6 HOH A 73 573 155 HOH HOH . 
U 6 HOH A 74 574 92 HOH HOH . 
U 6 HOH A 75 575 94 HOH HOH . 
U 6 HOH A 76 576 145 HOH HOH . 
U 6 HOH A 77 577 82 HOH HOH . 
U 6 HOH A 78 578 24 HOH HOH . 
U 6 HOH A 79 579 144 HOH HOH . 
U 6 HOH A 80 580 152 HOH HOH . 
U 6 HOH A 81 581 140 HOH HOH . 
U 6 HOH A 82 582 135 HOH HOH . 
U 6 HOH A 83 583 139 HOH HOH . 
U 6 HOH A 84 584 147 HOH HOH . 
U 6 HOH A 85 585 33 HOH HOH . 
U 6 HOH A 86 586 146 HOH HOH . 
U 6 HOH A 87 587 154 HOH HOH . 
U 6 HOH A 88 588 150 HOH HOH . 
U 6 HOH A 89 589 123 HOH HOH . 
U 6 HOH A 90 590 124 HOH HOH . 
U 6 HOH A 91 591 126 HOH HOH . 
U 6 HOH A 92 592 141 HOH HOH . 
U 6 HOH A 93 593 157 HOH HOH . 
V 6 HOH B 1 501 119 HOH HOH . 
V 6 HOH B 2 502 165 HOH HOH . 
V 6 HOH B 3 503 79 HOH HOH . 
V 6 HOH B 4 504 179 HOH HOH . 
V 6 HOH B 5 505 166 HOH HOH . 
V 6 HOH B 6 506 178 HOH HOH . 
V 6 HOH B 7 507 103 HOH HOH . 
V 6 HOH B 8 508 175 HOH HOH . 
V 6 HOH B 9 509 110 HOH HOH . 
V 6 HOH B 10 510 12 HOH HOH . 
V 6 HOH B 11 511 167 HOH HOH . 
V 6 HOH B 12 512 48 HOH HOH . 
V 6 HOH B 13 513 81 HOH HOH . 
V 6 HOH B 14 514 57 HOH HOH . 
V 6 HOH B 15 515 25 HOH HOH . 
V 6 HOH B 16 516 93 HOH HOH . 
V 6 HOH B 17 517 41 HOH HOH . 
V 6 HOH B 18 518 160 HOH HOH . 
V 6 HOH B 19 519 177 HOH HOH . 
V 6 HOH B 20 520 107 HOH HOH . 
V 6 HOH B 21 521 85 HOH HOH . 
V 6 HOH B 22 522 44 HOH HOH . 
V 6 HOH B 23 523 55 HOH HOH . 
V 6 HOH B 24 524 77 HOH HOH . 
V 6 HOH B 25 525 66 HOH HOH . 
V 6 HOH B 26 526 45 HOH HOH . 
V 6 HOH B 27 527 164 HOH HOH . 
V 6 HOH B 28 528 47 HOH HOH . 
V 6 HOH B 29 529 78 HOH HOH . 
V 6 HOH B 30 530 60 HOH HOH . 
V 6 HOH B 31 531 42 HOH HOH . 
V 6 HOH B 32 532 88 HOH HOH . 
V 6 HOH B 33 533 101 HOH HOH . 
V 6 HOH B 34 534 122 HOH HOH . 
V 6 HOH B 35 535 22 HOH HOH . 
V 6 HOH B 36 536 163 HOH HOH . 
V 6 HOH B 37 537 13 HOH HOH . 
V 6 HOH B 38 538 32 HOH HOH . 
V 6 HOH B 39 539 28 HOH HOH . 
V 6 HOH B 40 540 46 HOH HOH . 
V 6 HOH B 41 541 172 HOH HOH . 
V 6 HOH B 42 542 29 HOH HOH . 
V 6 HOH B 43 543 70 HOH HOH . 
V 6 HOH B 44 544 95 HOH HOH . 
V 6 HOH B 45 545 31 HOH HOH . 
V 6 HOH B 46 546 169 HOH HOH . 
V 6 HOH B 47 547 58 HOH HOH . 
V 6 HOH B 48 548 10 HOH HOH . 
V 6 HOH B 49 549 159 HOH HOH . 
V 6 HOH B 50 550 128 HOH HOH . 
V 6 HOH B 51 551 56 HOH HOH . 
V 6 HOH B 52 552 50 HOH HOH . 
V 6 HOH B 53 553 69 HOH HOH . 
V 6 HOH B 54 554 89 HOH HOH . 
V 6 HOH B 55 555 39 HOH HOH . 
V 6 HOH B 56 556 127 HOH HOH . 
V 6 HOH B 57 557 73 HOH HOH . 
V 6 HOH B 58 558 133 HOH HOH . 
V 6 HOH B 59 559 36 HOH HOH . 
V 6 HOH B 60 560 113 HOH HOH . 
V 6 HOH B 61 561 173 HOH HOH . 
V 6 HOH B 62 562 170 HOH HOH . 
V 6 HOH B 63 563 131 HOH HOH . 
V 6 HOH B 64 564 100 HOH HOH . 
V 6 HOH B 65 565 18 HOH HOH . 
V 6 HOH B 66 566 111 HOH HOH . 
V 6 HOH B 67 567 112 HOH HOH . 
V 6 HOH B 68 568 72 HOH HOH . 
V 6 HOH B 69 569 64 HOH HOH . 
V 6 HOH B 70 570 2 HOH HOH . 
V 6 HOH B 71 571 171 HOH HOH . 
V 6 HOH B 72 572 168 HOH HOH . 
V 6 HOH B 73 573 134 HOH HOH . 
V 6 HOH B 74 574 174 HOH HOH . 
V 6 HOH B 75 575 1 HOH HOH . 
V 6 HOH B 76 576 161 HOH HOH . 
V 6 HOH B 77 577 138 HOH HOH . 
V 6 HOH B 78 578 43 HOH HOH . 
V 6 HOH B 79 579 162 HOH HOH . 
V 6 HOH B 80 580 125 HOH HOH . 
V 6 HOH B 81 581 176 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 3 27.272 14.352 6.48 1 32.43 ? C1 GOL 403 A 1 
HETATM 2 O O1 GOL . . . E 3 27.04 15.44 5.619 1 28.54 ? O1 GOL 403 A 1 
HETATM 3 C C2 GOL . . . E 3 28.649 13.739 6.349 1 38.43 ? C2 GOL 403 A 1 
HETATM 4 O O2 GOL . . . E 3 28.946 13.011 7.537 1 46.93 ? O2 GOL 403 A 1 
HETATM 5 C C3 GOL . . . E 3 28.809 12.8 5.167 1 38.94 ? C3 GOL 403 A 1 
HETATM 6 O O3 GOL . . . E 3 30.177 12.655 4.796 1 39.15 ? O3 GOL 403 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           6 
#