data_6A8O # _model_server_result.job_id hZEde4jIizxMopkGxvMF5w _model_server_result.datetime_utc '2024-12-26 11:56:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6a8o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":101}' # _entry.id 6A8O # _exptl.entry_id 6A8O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 127.188 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description piperidine-1-carboximidamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6A8O _cell.length_a 71.26 _cell.length_b 82.45 _cell.length_c 105.32 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6A8O _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,C,E,F 1 1 A,D 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x+1/2,-y+1/2,-z 1 0 0 0 -1 0 0 0 -1 35.63 41.225 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 127 A CYS 136 1_555 A SG CYS 194 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 158 A CYS 168 1_555 A SG CYS 173 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf3 A SG CYS 184 A CYS 191 1_555 A SG CYS 212 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.828 ? disulf ? disulf4 B SG CYS 127 B CYS 136 1_555 B SG CYS 194 B CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? disulf ? disulf5 B SG CYS 158 B CYS 168 1_555 B SG CYS 173 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf6 B SG CYS 184 B CYS 191 1_555 B SG CYS 212 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.844 ? disulf ? disulf7 C SG CYS 1 P CYS 1 1_555 C SG CYS 10 P CYS 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? covale ? covale1 A ND2 ASN 104 A ASN 113 1_555 D C1 MAN . A MAN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.27 ? covale ? covale2 C CB ALA 6 P ALA 6 1_555 F C1 MRZ . P MRZ 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.526 ? # _chem_comp.formula 'C6 H13 N3' _chem_comp.formula_weight 127.188 _chem_comp.id MRZ _chem_comp.mon_nstd_flag . _chem_comp.name piperidine-1-carboximidamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C7 MRZ doub 259 n n C3 C2 MRZ sing 260 n n C3 N4 MRZ sing 261 n n C2 C1 MRZ sing 262 n n C7 N4 MRZ sing 263 n n C7 N8 MRZ sing 264 n n N4 C5 MRZ sing 265 n n C1 C6 MRZ sing 266 n n C5 C6 MRZ sing 267 n n C1 H1 MRZ sing 268 n n C1 H2 MRZ sing 269 n n C6 H3 MRZ sing 270 n n C6 H4 MRZ sing 271 n n C5 H5 MRZ sing 272 n n C5 H6 MRZ sing 273 n n C3 H7 MRZ sing 274 n n C3 H8 MRZ sing 275 n n C2 H9 MRZ sing 276 n n C2 H10 MRZ sing 277 n n N8 H11 MRZ sing 278 n n N8 H12 MRZ sing 279 n n N9 H13 MRZ sing 280 n n # _atom_sites.entry_id 6A8O _atom_sites.fract_transf_matrix[1][1] 0.014033 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012129 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009495 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 MAN A 1 301 244 MAN MAN . E 3 MAN B 1 301 245 MAN MAN . F 4 MRZ P 1 101 6 MRZ MRZ . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MRZ . . . F 4 -0.993 17.177 17.074 1 61.4 ? C1 MRZ 101 P 1 HETATM 2 C C6 MRZ . . . F 4 -1.421 17.039 18.536 1 56.9 ? C6 MRZ 101 P 1 HETATM 3 C C5 MRZ . . . F 4 -2.914 16.804 18.616 1 61.34 ? C5 MRZ 101 P 1 HETATM 4 N N4 MRZ . . . F 4 -3.378 15.769 17.681 1 58.57 ? N4 MRZ 101 P 1 HETATM 5 C C3 MRZ . . . F 4 -2.83 15.765 16.334 1 62.99 ? C3 MRZ 101 P 1 HETATM 6 C C2 MRZ . . . F 4 -1.329 15.869 16.41 1 61.07 ? C2 MRZ 101 P 1 HETATM 7 C C7 MRZ . . . F 4 -4.322 14.916 18.022 1 62.05 ? C7 MRZ 101 P 1 HETATM 8 N N8 MRZ . . . F 4 -4.838 14.969 19.248 1 73.77 ? N8 MRZ 101 P 1 HETATM 9 N N9 MRZ . . . F 4 -4.708 14.062 17.195 1 63.91 ? N9 MRZ 101 P 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #