data_6A8X # _model_server_result.job_id nS9vMz_PE_ARboduZnRCcg _model_server_result.datetime_utc '2024-11-15 05:55:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6a8x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 6A8X # _exptl.entry_id 6A8X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6A8X _cell.length_a 90.993 _cell.length_b 90.993 _cell.length_c 234.496 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6A8X _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 35 A GLY 38 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc2 A OE2 GLU 37 A GLU 40 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc3 A O GLU 93 A GLU 96 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc4 A OE1 GLU 93 A GLU 96 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc5 A O ASN 96 A ASN 99 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc6 A OD1 ASN 135 A ASN 138 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc7 A O SER 136 A SER 139 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc8 A O LEU 145 A LEU 148 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc9 A O GLY 147 A GLY 150 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc10 A OE1 GLU 173 A GLU 176 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? metalc ? metalc11 A OE2 GLU 173 A GLU 176 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? metalc ? metalc12 A OD1 ASP 214 A ASP 217 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc13 A OD2 ASP 214 A ASP 217 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.059 ? metalc ? metalc14 D CA CA . A CA 302 1_555 G O HOH . A HOH 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc15 B O GLY 35 B GLY 38 1_555 E CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc16 B OE2 GLU 37 B GLU 40 1_555 E CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc17 B O GLU 93 B GLU 96 1_555 E CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc18 B OE1 GLU 93 B GLU 96 1_555 E CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc19 B O ASN 96 B ASN 99 1_555 E CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc20 B OD1 ASN 135 B ASN 138 1_555 F CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc21 B O SER 136 B SER 139 1_555 F CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc22 B O LEU 145 B LEU 148 1_555 F CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc23 B O GLY 147 B GLY 150 1_555 F CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc24 B OE1 GLU 173 B GLU 176 1_555 F CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? metalc ? metalc25 B OE2 GLU 173 B GLU 176 1_555 F CA CA . B CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.954 ? metalc ? metalc26 B OD1 ASP 214 B ASP 217 1_555 E CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc27 B OD2 ASP 214 B ASP 217 1_555 E CA CA . B CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.18 ? metalc ? metalc28 F CA CA . B CA 302 1_555 H O HOH . B HOH 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6A8X _atom_sites.fract_transf_matrix[1][1] 0.01099 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01099 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004264 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 301 1 CA CA . D 2 CA A 1 302 2 CA CA . E 2 CA B 1 301 3 CA CA . F 2 CA B 1 302 4 CA CA . G 3 HOH A 1 401 62 HOH HOH . G 3 HOH A 2 402 104 HOH HOH . G 3 HOH A 3 403 68 HOH HOH . G 3 HOH A 4 404 143 HOH HOH . G 3 HOH A 5 405 146 HOH HOH . G 3 HOH A 6 406 52 HOH HOH . G 3 HOH A 7 407 34 HOH HOH . G 3 HOH A 8 408 160 HOH HOH . G 3 HOH A 9 409 72 HOH HOH . G 3 HOH A 10 410 192 HOH HOH . G 3 HOH A 11 411 193 HOH HOH . G 3 HOH A 12 412 95 HOH HOH . G 3 HOH A 13 413 94 HOH HOH . G 3 HOH A 14 414 91 HOH HOH . G 3 HOH A 15 415 7 HOH HOH . G 3 HOH A 16 416 71 HOH HOH . G 3 HOH A 17 417 122 HOH HOH . G 3 HOH A 18 418 92 HOH HOH . G 3 HOH A 19 419 105 HOH HOH . G 3 HOH A 20 420 1 HOH HOH . G 3 HOH A 21 421 131 HOH HOH . G 3 HOH A 22 422 33 HOH HOH . G 3 HOH A 23 423 43 HOH HOH . G 3 HOH A 24 424 46 HOH HOH . G 3 HOH A 25 425 126 HOH HOH . G 3 HOH A 26 426 54 HOH HOH . G 3 HOH A 27 427 112 HOH HOH . G 3 HOH A 28 428 53 HOH HOH . G 3 HOH A 29 429 156 HOH HOH . G 3 HOH A 30 430 36 HOH HOH . G 3 HOH A 31 431 218 HOH HOH . G 3 HOH A 32 432 191 HOH HOH . G 3 HOH A 33 433 93 HOH HOH . G 3 HOH A 34 434 124 HOH HOH . G 3 HOH A 35 435 70 HOH HOH . G 3 HOH A 36 436 225 HOH HOH . G 3 HOH A 37 437 57 HOH HOH . G 3 HOH A 38 438 67 HOH HOH . G 3 HOH A 39 439 20 HOH HOH . G 3 HOH A 40 440 205 HOH HOH . G 3 HOH A 41 441 17 HOH HOH . G 3 HOH A 42 442 48 HOH HOH . G 3 HOH A 43 443 115 HOH HOH . G 3 HOH A 44 444 45 HOH HOH . G 3 HOH A 45 445 194 HOH HOH . G 3 HOH A 46 446 119 HOH HOH . G 3 HOH A 47 447 141 HOH HOH . G 3 HOH A 48 448 83 HOH HOH . G 3 HOH A 49 449 82 HOH HOH . G 3 HOH A 50 450 10 HOH HOH . G 3 HOH A 51 451 208 HOH HOH . G 3 HOH A 52 452 18 HOH HOH . G 3 HOH A 53 453 85 HOH HOH . G 3 HOH A 54 454 44 HOH HOH . G 3 HOH A 55 455 25 HOH HOH . G 3 HOH A 56 456 11 HOH HOH . G 3 HOH A 57 457 84 HOH HOH . G 3 HOH A 58 458 174 HOH HOH . G 3 HOH A 59 459 98 HOH HOH . G 3 HOH A 60 460 26 HOH HOH . G 3 HOH A 61 461 28 HOH HOH . G 3 HOH A 62 462 187 HOH HOH . G 3 HOH A 63 463 79 HOH HOH . G 3 HOH A 64 464 103 HOH HOH . G 3 HOH A 65 465 24 HOH HOH . G 3 HOH A 66 466 139 HOH HOH . G 3 HOH A 67 467 76 HOH HOH . G 3 HOH A 68 468 19 HOH HOH . G 3 HOH A 69 469 39 HOH HOH . G 3 HOH A 70 470 157 HOH HOH . G 3 HOH A 71 471 5 HOH HOH . G 3 HOH A 72 472 167 HOH HOH . G 3 HOH A 73 473 21 HOH HOH . G 3 HOH A 74 474 3 HOH HOH . G 3 HOH A 75 475 41 HOH HOH . G 3 HOH A 76 476 185 HOH HOH . G 3 HOH A 77 477 102 HOH HOH . G 3 HOH A 78 478 154 HOH HOH . G 3 HOH A 79 479 220 HOH HOH . G 3 HOH A 80 480 182 HOH HOH . G 3 HOH A 81 481 226 HOH HOH . G 3 HOH A 82 482 2 HOH HOH . G 3 HOH A 83 483 164 HOH HOH . G 3 HOH A 84 484 169 HOH HOH . G 3 HOH A 85 485 107 HOH HOH . G 3 HOH A 86 486 142 HOH HOH . G 3 HOH A 87 487 203 HOH HOH . G 3 HOH A 88 488 168 HOH HOH . G 3 HOH A 89 489 121 HOH HOH . G 3 HOH A 90 490 136 HOH HOH . G 3 HOH A 91 491 234 HOH HOH . G 3 HOH A 92 492 177 HOH HOH . G 3 HOH A 93 493 233 HOH HOH . G 3 HOH A 94 494 207 HOH HOH . G 3 HOH A 95 495 222 HOH HOH . G 3 HOH A 96 496 183 HOH HOH . G 3 HOH A 97 497 216 HOH HOH . G 3 HOH A 98 498 132 HOH HOH . G 3 HOH A 99 499 175 HOH HOH . G 3 HOH A 100 500 217 HOH HOH . G 3 HOH A 101 501 184 HOH HOH . G 3 HOH A 102 502 219 HOH HOH . G 3 HOH A 103 503 229 HOH HOH . G 3 HOH A 104 504 212 HOH HOH . G 3 HOH A 105 505 152 HOH HOH . G 3 HOH A 106 506 178 HOH HOH . G 3 HOH A 107 507 231 HOH HOH . G 3 HOH A 108 508 215 HOH HOH . H 3 HOH B 1 401 66 HOH HOH . H 3 HOH B 2 402 59 HOH HOH . H 3 HOH B 3 403 81 HOH HOH . H 3 HOH B 4 404 163 HOH HOH . H 3 HOH B 5 405 12 HOH HOH . H 3 HOH B 6 406 197 HOH HOH . H 3 HOH B 7 407 61 HOH HOH . H 3 HOH B 8 408 37 HOH HOH . H 3 HOH B 9 409 117 HOH HOH . H 3 HOH B 10 410 69 HOH HOH . H 3 HOH B 11 411 125 HOH HOH . H 3 HOH B 12 412 32 HOH HOH . H 3 HOH B 13 413 4 HOH HOH . H 3 HOH B 14 414 56 HOH HOH . H 3 HOH B 15 415 89 HOH HOH . H 3 HOH B 16 416 127 HOH HOH . H 3 HOH B 17 417 27 HOH HOH . H 3 HOH B 18 418 133 HOH HOH . H 3 HOH B 19 419 110 HOH HOH . H 3 HOH B 20 420 106 HOH HOH . H 3 HOH B 21 421 155 HOH HOH . H 3 HOH B 22 422 74 HOH HOH . H 3 HOH B 23 423 88 HOH HOH . H 3 HOH B 24 424 51 HOH HOH . H 3 HOH B 25 425 60 HOH HOH . H 3 HOH B 26 426 38 HOH HOH . H 3 HOH B 27 427 202 HOH HOH . H 3 HOH B 28 428 114 HOH HOH . H 3 HOH B 29 429 78 HOH HOH . H 3 HOH B 30 430 128 HOH HOH . H 3 HOH B 31 431 138 HOH HOH . H 3 HOH B 32 432 150 HOH HOH . H 3 HOH B 33 433 49 HOH HOH . H 3 HOH B 34 434 149 HOH HOH . H 3 HOH B 35 435 118 HOH HOH . H 3 HOH B 36 436 80 HOH HOH . H 3 HOH B 37 437 140 HOH HOH . H 3 HOH B 38 438 188 HOH HOH . H 3 HOH B 39 439 75 HOH HOH . H 3 HOH B 40 440 9 HOH HOH . H 3 HOH B 41 441 100 HOH HOH . H 3 HOH B 42 442 55 HOH HOH . H 3 HOH B 43 443 47 HOH HOH . H 3 HOH B 44 444 64 HOH HOH . H 3 HOH B 45 445 228 HOH HOH . H 3 HOH B 46 446 15 HOH HOH . H 3 HOH B 47 447 22 HOH HOH . H 3 HOH B 48 448 137 HOH HOH . H 3 HOH B 49 449 58 HOH HOH . H 3 HOH B 50 450 8 HOH HOH . H 3 HOH B 51 451 145 HOH HOH . H 3 HOH B 52 452 108 HOH HOH . H 3 HOH B 53 453 6 HOH HOH . H 3 HOH B 54 454 42 HOH HOH . H 3 HOH B 55 455 23 HOH HOH . H 3 HOH B 56 456 111 HOH HOH . H 3 HOH B 57 457 148 HOH HOH . H 3 HOH B 58 458 35 HOH HOH . H 3 HOH B 59 459 204 HOH HOH . H 3 HOH B 60 460 109 HOH HOH . H 3 HOH B 61 461 123 HOH HOH . H 3 HOH B 62 462 214 HOH HOH . H 3 HOH B 63 463 77 HOH HOH . H 3 HOH B 64 464 190 HOH HOH . H 3 HOH B 65 465 158 HOH HOH . H 3 HOH B 66 466 113 HOH HOH . H 3 HOH B 67 467 99 HOH HOH . H 3 HOH B 68 468 13 HOH HOH . H 3 HOH B 69 469 86 HOH HOH . H 3 HOH B 70 470 130 HOH HOH . H 3 HOH B 71 471 16 HOH HOH . H 3 HOH B 72 472 189 HOH HOH . H 3 HOH B 73 473 151 HOH HOH . H 3 HOH B 74 474 90 HOH HOH . H 3 HOH B 75 475 65 HOH HOH . H 3 HOH B 76 476 153 HOH HOH . H 3 HOH B 77 477 87 HOH HOH . H 3 HOH B 78 478 14 HOH HOH . H 3 HOH B 79 479 50 HOH HOH . H 3 HOH B 80 480 134 HOH HOH . H 3 HOH B 81 481 31 HOH HOH . H 3 HOH B 82 482 209 HOH HOH . H 3 HOH B 83 483 30 HOH HOH . H 3 HOH B 84 484 211 HOH HOH . H 3 HOH B 85 485 173 HOH HOH . H 3 HOH B 86 486 144 HOH HOH . H 3 HOH B 87 487 159 HOH HOH . H 3 HOH B 88 488 232 HOH HOH . H 3 HOH B 89 489 63 HOH HOH . H 3 HOH B 90 490 230 HOH HOH . H 3 HOH B 91 491 135 HOH HOH . H 3 HOH B 92 492 172 HOH HOH . H 3 HOH B 93 493 101 HOH HOH . H 3 HOH B 94 494 179 HOH HOH . H 3 HOH B 95 495 166 HOH HOH . H 3 HOH B 96 496 224 HOH HOH . H 3 HOH B 97 497 96 HOH HOH . H 3 HOH B 98 498 180 HOH HOH . H 3 HOH B 99 499 162 HOH HOH . H 3 HOH B 100 500 129 HOH HOH . H 3 HOH B 101 501 116 HOH HOH . H 3 HOH B 102 502 206 HOH HOH . H 3 HOH B 103 503 198 HOH HOH . H 3 HOH B 104 504 181 HOH HOH . H 3 HOH B 105 505 200 HOH HOH . H 3 HOH B 106 506 171 HOH HOH . H 3 HOH B 107 507 223 HOH HOH . H 3 HOH B 108 508 170 HOH HOH . H 3 HOH B 109 509 213 HOH HOH . H 3 HOH B 110 510 221 HOH HOH . H 3 HOH B 111 511 210 HOH HOH . H 3 HOH B 112 512 227 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x -23.427 _atom_site.Cartn_y 27.781 _atom_site.Cartn_z 6.788 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 53.01 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 393 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #