data_6A93 # _model_server_result.job_id RhB5nqM3DIAeWXncIriWlQ _model_server_result.datetime_utc '2024-11-08 06:16:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6a93 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":3001}' # _entry.id 6A93 # _exptl.entry_id 6A93 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 410.484 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[2-[4-(6-fluoranyl-1,2-benzoxazol-3-yl)piperidin-1-yl]ethyl]-2-methyl-6,7,8,9-tetrahydropyrido[1,2-a]pyrimidin-4-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.55 _cell.angle_gamma 90 _cell.entry_id 6A93 _cell.length_a 277.72 _cell.length_b 42.15 _cell.length_c 91.94 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6A93 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H 1 1 B,I,J,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 82 A CYS 148 1_555 A SG CYS 161 A CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 322 A CYS 349 1_555 A SG CYS 326 A CYS 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 B SG CYS 82 B CYS 148 1_555 B SG CYS 161 B CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 B SG CYS 322 B CYS 349 1_555 B SG CYS 326 B CYS 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 B SG CYS 370 B CYS 397 1_555 J C1 PLM . B PLM 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.751 ? metalc ? metalc1 A NE2 HIS 116 A HIS 182 1_555 E ZN ZN . A ZN 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc2 A NE2 HIS 117 A HIS 183 1_555 E ZN ZN . A ZN 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc3 A OE2 GLU 198 A GLU 264 1_555 E ZN ZN . A ZN 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc4 A OE1 GLU 291 A GLU 318 1_555 E ZN ZN . A ZN 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc5 A OE2 GLU 291 A GLU 318 1_555 E ZN ZN . A ZN 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? # _chem_comp.formula 'C23 H27 F N4 O2' _chem_comp.formula_weight 410.484 _chem_comp.id 8NU _chem_comp.mon_nstd_flag . _chem_comp.name 3-[2-[4-(6-fluoranyl-1,2-benzoxazol-3-yl)piperidin-1-yl]ethyl]-2-methyl-6,7,8,9-tetrahydropyrido[1,2-a]pyrimidin-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O14 C15 8NU sing 38 n y O14 N13 8NU sing 39 n y C21 C15 8NU doub 40 n y C21 C19 8NU sing 41 n y C15 C16 8NU sing 42 n y N13 C12 8NU doub 43 n y F20 C19 8NU sing 44 n n C19 C18 8NU doub 45 n y C12 C16 8NU sing 46 n y C12 C09 8NU sing 47 n n C16 C17 8NU doub 48 n y C10 C09 8NU sing 49 n n C10 C11 8NU sing 50 n n C18 C17 8NU sing 51 n y C09 C08 8NU sing 52 n n C11 N06 8NU sing 53 n n C08 C07 8NU sing 54 n n O23 C22 8NU doub 55 n n N06 C07 8NU sing 56 n n N06 C05 8NU sing 57 n n C05 C04 8NU sing 58 n n C04 C03 8NU sing 59 n n C22 C03 8NU sing 60 n n C22 N24 8NU sing 61 n n C25 N24 8NU sing 62 n n C25 C26 8NU sing 63 n n C03 C02 8NU doub 64 n n N24 C29 8NU sing 65 n n C26 C27 8NU sing 66 n n C02 N30 8NU sing 67 n n C02 C01 8NU sing 68 n n C29 N30 8NU doub 69 n n C29 C28 8NU sing 70 n n C27 C28 8NU sing 71 n n C01 H1 8NU sing 72 n n C01 H2 8NU sing 73 n n C01 H3 8NU sing 74 n n C04 H4 8NU sing 75 n n C04 H5 8NU sing 76 n n C05 H6 8NU sing 77 n n C05 H7 8NU sing 78 n n C07 H8 8NU sing 79 n n C07 H9 8NU sing 80 n n C08 H10 8NU sing 81 n n C08 H11 8NU sing 82 n n C09 H12 8NU sing 83 n n C10 H13 8NU sing 84 n n C10 H14 8NU sing 85 n n C11 H15 8NU sing 86 n n C11 H16 8NU sing 87 n n C17 H17 8NU sing 88 n n C18 H18 8NU sing 89 n n C21 H19 8NU sing 90 n n C25 H20 8NU sing 91 n n C25 H21 8NU sing 92 n n C26 H22 8NU sing 93 n n C26 H23 8NU sing 94 n n C27 H24 8NU sing 95 n n C27 H25 8NU sing 96 n n C28 H26 8NU sing 97 n n C28 H27 8NU sing 98 n n # _atom_sites.entry_id 6A93 _atom_sites.fract_transf_matrix[1][1] 0.003601 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00016 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023725 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010887 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 8NU A 1 3001 3001 8NU RSP . D 3 CLR A 1 3002 2 CLR CLR . E 4 ZN A 1 3003 1 ZN ZN . F 5 1PE A 1 3004 1 1PE 1PE . G 5 1PE A 1 3005 2 1PE 1PE . H 5 1PE A 1 3006 3 1PE 1PE . I 2 8NU B 1 3001 3001 8NU RSP . J 6 PLM B 1 3002 4001 PLM PLM . K 3 CLR B 1 3003 1 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 8NU . . . I 2 14.061 -0.566 21.908 1 53.47 ? C01 8NU 3001 B 1 HETATM 2 C C02 8NU . . . I 2 13.042 -0.998 20.694 1 56.45 ? C02 8NU 3001 B 1 HETATM 3 C C03 8NU . . . I 2 12.908 -0.247 19.572 1 60.46 ? C03 8NU 3001 B 1 HETATM 4 C C04 8NU . . . I 2 13.679 1.087 19.269 1 66.35 ? C04 8NU 3001 B 1 HETATM 5 C C05 8NU . . . I 2 14.755 0.877 18.209 1 72.3 ? C05 8NU 3001 B 1 HETATM 6 C C07 8NU . . . I 2 17.07 0.985 17.782 1 79.93 ? C07 8NU 3001 B 1 HETATM 7 C C08 8NU . . . I 2 18.286 1.855 17.381 1 80.86 ? C08 8NU 3001 B 1 HETATM 8 C C09 8NU . . . I 2 17.882 3.176 16.681 1 81.05 ? C09 8NU 3001 B 1 HETATM 9 C C10 8NU . . . I 2 16.89 3.91 17.589 1 79.39 ? C10 8NU 3001 B 1 HETATM 10 C C11 8NU . . . I 2 15.675 3.075 17.987 1 78.54 ? C11 8NU 3001 B 1 HETATM 11 C C12 8NU . . . I 2 19.02 4.173 16.321 1 84.3 ? C12 8NU 3001 B 1 HETATM 12 C C15 8NU . . . I 2 21.058 5.096 15.669 1 81.46 ? C15 8NU 3001 B 1 HETATM 13 C C16 8NU . . . I 2 20.423 3.848 15.862 1 77.11 ? C16 8NU 3001 B 1 HETATM 14 C C17 8NU . . . I 2 21.198 2.673 15.603 1 62.86 ? C17 8NU 3001 B 1 HETATM 15 C C18 8NU . . . I 2 22.532 2.736 15.171 1 63.32 ? C18 8NU 3001 B 1 HETATM 16 C C19 8NU . . . I 2 23.156 4.021 14.982 1 74.98 ? C19 8NU 3001 B 1 HETATM 17 C C21 8NU . . . I 2 22.428 5.209 15.229 1 77.49 ? C21 8NU 3001 B 1 HETATM 18 C C22 8NU . . . I 2 11.945 -0.668 18.423 1 62.75 ? C22 8NU 3001 B 1 HETATM 19 C C25 8NU . . . I 2 10.121 -2.506 17.531 1 69.25 ? C25 8NU 3001 B 1 HETATM 20 C C26 8NU . . . I 2 9.565 -3.94 17.735 1 70.93 ? C26 8NU 3001 B 1 HETATM 21 C C27 8NU . . . I 2 9.228 -4.142 19.193 1 71.72 ? C27 8NU 3001 B 1 HETATM 22 C C28 8NU . . . I 2 10.514 -4.011 20.018 1 68.82 ? C28 8NU 3001 B 1 HETATM 23 C C29 8NU . . . I 2 11.413 -2.631 19.883 1 64.44 ? C29 8NU 3001 B 1 HETATM 24 F F20 8NU . . . I 2 24.418 4.065 14.574 1 83.51 ? F20 8NU 3001 B 1 HETATM 25 N N06 8NU . . . I 2 15.978 1.699 18.513 1 77.65 ? N06 8NU 3001 B 1 HETATM 26 N N13 8NU . . . I 2 18.935 5.51 16.363 1 89.91 ? N13 8NU 3001 B 1 HETATM 27 N N24 8NU . . . I 2 11.155 -1.963 18.637 1 65.56 ? N24 8NU 3001 B 1 HETATM 28 N N30 8NU . . . I 2 12.247 -2.235 20.829 1 59.66 ? N30 8NU 3001 B 1 HETATM 29 O O14 8NU . . . I 2 20.107 6.08 15.989 1 86.91 ? O14 8NU 3001 B 1 HETATM 30 O O23 8NU . . . I 2 11.774 -0.043 17.383 1 64.92 ? O23 8NU 3001 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 369 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 30 #