data_6A93 # _model_server_result.job_id v7YRG4a3YCA9Pb4q8mOYwQ _model_server_result.datetime_utc '2024-11-08 06:02:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6a93 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":3002}' # _entry.id 6A93 # _exptl.entry_id 6A93 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.55 _cell.angle_gamma 90 _cell.entry_id 6A93 _cell.length_a 277.72 _cell.length_b 42.15 _cell.length_c 91.94 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6A93 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H 1 1 B,I,J,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 82 A CYS 148 1_555 A SG CYS 161 A CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 322 A CYS 349 1_555 A SG CYS 326 A CYS 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 B SG CYS 82 B CYS 148 1_555 B SG CYS 161 B CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 B SG CYS 322 B CYS 349 1_555 B SG CYS 326 B CYS 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 B SG CYS 370 B CYS 397 1_555 J C1 PLM . B PLM 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.751 ? metalc ? metalc1 A NE2 HIS 116 A HIS 182 1_555 E ZN ZN . A ZN 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc2 A NE2 HIS 117 A HIS 183 1_555 E ZN ZN . A ZN 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc3 A OE2 GLU 198 A GLU 264 1_555 E ZN ZN . A ZN 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc4 A OE1 GLU 291 A GLU 318 1_555 E ZN ZN . A ZN 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc5 A OE2 GLU 291 A GLU 318 1_555 E ZN ZN . A ZN 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 168 n n C1 C10 CLR sing 169 n n C1 H11 CLR sing 170 n n C1 H12 CLR sing 171 n n C2 C3 CLR sing 172 n n C2 H21 CLR sing 173 n n C2 H22 CLR sing 174 n n C3 C4 CLR sing 175 n n C3 O1 CLR sing 176 n n C3 H3 CLR sing 177 n n C4 C5 CLR sing 178 n n C4 H41 CLR sing 179 n n C4 H42 CLR sing 180 n n C5 C6 CLR doub 181 n n C5 C10 CLR sing 182 n n C6 C7 CLR sing 183 n n C6 H6 CLR sing 184 n n C7 C8 CLR sing 185 n n C7 H71 CLR sing 186 n n C7 H72 CLR sing 187 n n C8 C9 CLR sing 188 n n C8 C14 CLR sing 189 n n C8 H8 CLR sing 190 n n C9 C10 CLR sing 191 n n C9 C11 CLR sing 192 n n C9 H9 CLR sing 193 n n C10 C19 CLR sing 194 n n C11 C12 CLR sing 195 n n C11 H111 CLR sing 196 n n C11 H112 CLR sing 197 n n C12 C13 CLR sing 198 n n C12 H121 CLR sing 199 n n C12 H122 CLR sing 200 n n C13 C14 CLR sing 201 n n C13 C17 CLR sing 202 n n C13 C18 CLR sing 203 n n C14 C15 CLR sing 204 n n C14 H14 CLR sing 205 n n C15 C16 CLR sing 206 n n C15 H151 CLR sing 207 n n C15 H152 CLR sing 208 n n C16 C17 CLR sing 209 n n C16 H161 CLR sing 210 n n C16 H162 CLR sing 211 n n C17 C20 CLR sing 212 n n C17 H17 CLR sing 213 n n C18 H181 CLR sing 214 n n C18 H182 CLR sing 215 n n C18 H183 CLR sing 216 n n C19 H191 CLR sing 217 n n C19 H192 CLR sing 218 n n C19 H193 CLR sing 219 n n C20 C21 CLR sing 220 n n C20 C22 CLR sing 221 n n C20 H20 CLR sing 222 n n C21 H211 CLR sing 223 n n C21 H212 CLR sing 224 n n C21 H213 CLR sing 225 n n C22 C23 CLR sing 226 n n C22 H221 CLR sing 227 n n C22 H222 CLR sing 228 n n C23 C24 CLR sing 229 n n C23 H231 CLR sing 230 n n C23 H232 CLR sing 231 n n C24 C25 CLR sing 232 n n C24 H241 CLR sing 233 n n C24 H242 CLR sing 234 n n C25 C26 CLR sing 235 n n C25 C27 CLR sing 236 n n C25 H25 CLR sing 237 n n C26 H261 CLR sing 238 n n C26 H262 CLR sing 239 n n C26 H263 CLR sing 240 n n C27 H271 CLR sing 241 n n C27 H272 CLR sing 242 n n C27 H273 CLR sing 243 n n O1 H1 CLR sing 244 n n # _atom_sites.entry_id 6A93 _atom_sites.fract_transf_matrix[1][1] 0.003601 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00016 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023725 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010887 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 8NU A 1 3001 3001 8NU RSP . D 3 CLR A 1 3002 2 CLR CLR . E 4 ZN A 1 3003 1 ZN ZN . F 5 1PE A 1 3004 1 1PE 1PE . G 5 1PE A 1 3005 2 1PE 1PE . H 5 1PE A 1 3006 3 1PE 1PE . I 2 8NU B 1 3001 3001 8NU RSP . J 6 PLM B 1 3002 4001 PLM PLM . K 3 CLR B 1 3003 1 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . D 3 22.552 15.65 56.415 1 63.04 ? C1 CLR 3002 A 1 HETATM 2 C C2 CLR . . . D 3 21.096 15.936 56.07 1 65.26 ? C2 CLR 3002 A 1 HETATM 3 C C3 CLR . . . D 3 20.187 15.037 56.892 1 69.59 ? C3 CLR 3002 A 1 HETATM 4 C C4 CLR . . . D 3 20.327 15.446 58.35 1 67.72 ? C4 CLR 3002 A 1 HETATM 5 C C5 CLR . . . D 3 21.774 15.315 58.765 1 63.09 ? C5 CLR 3002 A 1 HETATM 6 C C6 CLR . . . D 3 22.039 14.705 59.932 1 58.17 ? C6 CLR 3002 A 1 HETATM 7 C C7 CLR . . . D 3 23.427 14.495 60.493 1 57.42 ? C7 CLR 3002 A 1 HETATM 8 C C8 CLR . . . D 3 24.496 15.227 59.697 1 58.99 ? C8 CLR 3002 A 1 HETATM 9 C C9 CLR . . . D 3 24.192 15.205 58.207 1 59.57 ? C9 CLR 3002 A 1 HETATM 10 C C10 CLR . . . D 3 22.867 15.886 57.89 1 63.75 ? C10 CLR 3002 A 1 HETATM 11 C C11 CLR . . . D 3 25.342 15.801 57.389 1 60.3 ? C11 CLR 3002 A 1 HETATM 12 C C12 CLR . . . D 3 26.676 15.104 57.668 1 62.35 ? C12 CLR 3002 A 1 HETATM 13 C C13 CLR . . . D 3 26.986 15.169 59.156 1 64.8 ? C13 CLR 3002 A 1 HETATM 14 C C14 CLR . . . D 3 25.832 14.535 59.908 1 62.85 ? C14 CLR 3002 A 1 HETATM 15 C C15 CLR . . . D 3 26.321 14.414 61.341 1 66.46 ? C15 CLR 3002 A 1 HETATM 16 C C16 CLR . . . D 3 27.816 14.16 61.165 1 68.43 ? C16 CLR 3002 A 1 HETATM 17 C C17 CLR . . . D 3 28.144 14.327 59.682 1 63.43 ? C17 CLR 3002 A 1 HETATM 18 C C18 CLR . . . D 3 27.176 16.617 59.596 1 69.19 ? C18 CLR 3002 A 1 HETATM 19 C C19 CLR . . . D 3 22.967 17.381 58.17 1 67.22 ? C19 CLR 3002 A 1 HETATM 20 C C20 CLR . . . D 3 29.569 14.861 59.547 1 55.43 ? C20 CLR 3002 A 1 HETATM 21 C C21 CLR . . . D 3 30.093 14.857 58.115 1 53.19 ? C21 CLR 3002 A 1 HETATM 22 C C22 CLR . . . D 3 30.468 14.008 60.438 1 50.54 ? C22 CLR 3002 A 1 HETATM 23 C C23 CLR . . . D 3 31.933 14.423 60.405 1 49.56 ? C23 CLR 3002 A 1 HETATM 24 C C24 CLR . . . D 3 32.781 13.348 61.074 1 50.21 ? C24 CLR 3002 A 1 HETATM 25 C C25 CLR . . . D 3 34.255 13.734 61.096 1 54.42 ? C25 CLR 3002 A 1 HETATM 26 C C26 CLR . . . D 3 34.556 14.684 62.25 1 61.7 ? C26 CLR 3002 A 1 HETATM 27 C C27 CLR . . . D 3 35.138 12.494 61.154 1 48.31 ? C27 CLR 3002 A 1 HETATM 28 O O1 CLR . . . D 3 18.828 15.2 56.471 1 73.73 ? O1 CLR 3002 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 28 #