data_6A9U # _model_server_result.job_id SXdrEVplDIfkWeZE2x_uXA _model_server_result.datetime_utc '2024-11-22 07:03:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6a9u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 6A9U # _exptl.entry_id 6A9U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6A9U _cell.length_a 148.089 _cell.length_b 148.089 _cell.length_c 124.989 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6A9U _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C 01B 1 B 01B 1 1_555 B N PRO 2 B PRO 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale2 B C ALA 4 B ALA 4 1_555 B N NH2 5 B NH2 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? metalc ? metalc1 A OD1 ASP 271 A ASP 327 1_555 C MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc2 A OD2 ASP 271 A ASP 327 1_555 C MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc3 A OD1 ASP 282 A ASP 338 1_555 C MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc4 A OD2 ASP 282 A ASP 338 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc5 A NE2 HIS 361 A HIS 417 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc6 A OE1 GLU 388 A GLU 444 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc7 A OE2 GLU 411 A GLU 467 1_555 C MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc8 A OE1 GLU 411 A GLU 467 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc9 C MN MN . A MN 601 1_555 B N 01B 1 B 01B 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc10 C MN MN . A MN 601 1_555 B O2 01B 1 B 01B 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc11 D MN MN . A MN 602 1_555 B O2 01B 1 B 01B 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6A9U _atom_sites.fract_transf_matrix[1][1] 0.006753 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006753 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008001 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MN A 1 601 6 MN MN . D 3 MN A 1 602 7 MN MN . E 4 HOH A 1 701 43 HOH HOH . E 4 HOH A 2 702 24 HOH HOH . E 4 HOH A 3 703 2 HOH HOH . E 4 HOH A 4 704 52 HOH HOH . E 4 HOH A 5 705 34 HOH HOH . E 4 HOH A 6 706 12 HOH HOH . E 4 HOH A 7 707 1 HOH HOH . E 4 HOH A 8 708 23 HOH HOH . E 4 HOH A 9 709 59 HOH HOH . E 4 HOH A 10 710 60 HOH HOH . E 4 HOH A 11 711 9 HOH HOH . E 4 HOH A 12 712 55 HOH HOH . E 4 HOH A 13 713 57 HOH HOH . E 4 HOH A 14 714 32 HOH HOH . E 4 HOH A 15 715 10 HOH HOH . E 4 HOH A 16 716 31 HOH HOH . E 4 HOH A 17 717 7 HOH HOH . E 4 HOH A 18 718 40 HOH HOH . E 4 HOH A 19 719 19 HOH HOH . E 4 HOH A 20 720 41 HOH HOH . E 4 HOH A 21 721 26 HOH HOH . E 4 HOH A 22 722 39 HOH HOH . E 4 HOH A 23 723 25 HOH HOH . E 4 HOH A 24 724 65 HOH HOH . E 4 HOH A 25 725 82 HOH HOH . E 4 HOH A 26 726 71 HOH HOH . E 4 HOH A 27 727 14 HOH HOH . E 4 HOH A 28 728 68 HOH HOH . E 4 HOH A 29 729 18 HOH HOH . E 4 HOH A 30 730 45 HOH HOH . E 4 HOH A 31 731 49 HOH HOH . E 4 HOH A 32 732 51 HOH HOH . E 4 HOH A 33 733 30 HOH HOH . E 4 HOH A 34 734 42 HOH HOH . E 4 HOH A 35 735 50 HOH HOH . E 4 HOH A 36 736 3 HOH HOH . E 4 HOH A 37 737 13 HOH HOH . E 4 HOH A 38 738 29 HOH HOH . E 4 HOH A 39 739 62 HOH HOH . E 4 HOH A 40 740 37 HOH HOH . E 4 HOH A 41 741 6 HOH HOH . E 4 HOH A 42 742 36 HOH HOH . E 4 HOH A 43 743 27 HOH HOH . E 4 HOH A 44 744 88 HOH HOH . E 4 HOH A 45 745 48 HOH HOH . E 4 HOH A 46 746 87 HOH HOH . E 4 HOH A 47 747 79 HOH HOH . E 4 HOH A 48 748 11 HOH HOH . E 4 HOH A 49 749 4 HOH HOH . E 4 HOH A 50 750 15 HOH HOH . E 4 HOH A 51 751 16 HOH HOH . E 4 HOH A 52 752 5 HOH HOH . E 4 HOH A 53 753 69 HOH HOH . E 4 HOH A 54 754 28 HOH HOH . E 4 HOH A 55 755 35 HOH HOH . E 4 HOH A 56 756 54 HOH HOH . E 4 HOH A 57 757 17 HOH HOH . E 4 HOH A 58 758 70 HOH HOH . E 4 HOH A 59 759 53 HOH HOH . E 4 HOH A 60 760 22 HOH HOH . E 4 HOH A 61 761 20 HOH HOH . E 4 HOH A 62 762 21 HOH HOH . E 4 HOH A 63 763 33 HOH HOH . E 4 HOH A 64 764 84 HOH HOH . E 4 HOH A 65 765 75 HOH HOH . E 4 HOH A 66 766 76 HOH HOH . E 4 HOH A 67 767 83 HOH HOH . E 4 HOH A 68 768 81 HOH HOH . E 4 HOH A 69 769 8 HOH HOH . E 4 HOH A 70 770 77 HOH HOH . E 4 HOH A 71 771 89 HOH HOH . E 4 HOH A 72 772 56 HOH HOH . E 4 HOH A 73 773 46 HOH HOH . E 4 HOH A 74 774 72 HOH HOH . E 4 HOH A 75 775 63 HOH HOH . E 4 HOH A 76 776 47 HOH HOH . E 4 HOH A 77 777 86 HOH HOH . E 4 HOH A 78 778 73 HOH HOH . E 4 HOH A 79 779 85 HOH HOH . E 4 HOH A 80 780 44 HOH HOH . E 4 HOH A 81 781 74 HOH HOH . E 4 HOH A 82 782 80 HOH HOH . E 4 HOH A 83 783 38 HOH HOH . E 4 HOH A 84 784 67 HOH HOH . E 4 HOH A 85 785 64 HOH HOH . E 4 HOH A 86 786 66 HOH HOH . E 4 HOH A 87 787 61 HOH HOH . E 4 HOH A 88 788 58 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -6.081 _atom_site.Cartn_y -35.821 _atom_site.Cartn_z -20.503 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.18 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 602 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #