data_6A9V # _model_server_result.job_id LICYRnTkE09kHk4DCIARDg _model_server_result.datetime_utc '2025-01-10 21:50:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6a9v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 6A9V # _exptl.entry_id 6A9V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6A9V _cell.length_a 142.081 _cell.length_b 142.081 _cell.length_c 118.731 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6A9V _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 286 A ASP 327 1_555 B MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc2 A OD2 ASP 286 A ASP 327 1_555 B MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc3 A OD1 ASP 297 A ASP 338 1_555 B MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc4 A OD2 ASP 297 A ASP 338 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc5 A NE2 HIS 376 A HIS 417 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc6 A OE1 GLU 403 A GLU 444 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc7 A OE1 GLU 426 A GLU 467 1_555 B MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc8 A OE2 GLU 426 A GLU 467 1_555 C MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc9 B MN MN . A MN 601 1_555 E O GLY . A GLY 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc10 B MN MN . A MN 601 1_555 E N GLY . A GLY 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc11 C MN MN . A MN 602 1_555 E OXT GLY . A GLY 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc12 C MN MN . A MN 602 1_555 E O GLY . A GLY 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 235 n n C1 C2 PGE sing 236 n n C1 H1 PGE sing 237 n n C1 H12 PGE sing 238 n n O1 HO1 PGE sing 239 n n C2 O2 PGE sing 240 n n C2 H2 PGE sing 241 n n C2 H22 PGE sing 242 n n O2 C3 PGE sing 243 n n C3 C4 PGE sing 244 n n C3 H3 PGE sing 245 n n C3 H32 PGE sing 246 n n C4 O3 PGE sing 247 n n C4 H4 PGE sing 248 n n C4 H42 PGE sing 249 n n O4 C6 PGE sing 250 n n O4 HO4 PGE sing 251 n n C6 C5 PGE sing 252 n n C6 H6 PGE sing 253 n n C6 H62 PGE sing 254 n n C5 O3 PGE sing 255 n n C5 H5 PGE sing 256 n n C5 H52 PGE sing 257 n n # _atom_sites.entry_id 6A9V _atom_sites.fract_transf_matrix[1][1] 0.007038 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007038 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008422 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 601 1 MN MN . C 2 MN A 1 602 2 MN MN . D 3 PGE A 1 603 1 PGE PGE . E 4 GLY A 1 604 1 GLY GLY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . D 3 -3.802 -39.394 -22.425 1 51 ? C1 PGE 603 A 1 HETATM 2 O O1 PGE . . . D 3 -5.062 -40.052 -22.43 1 50.77 ? O1 PGE 603 A 1 HETATM 3 C C2 PGE . . . D 3 -3.878 -38.174 -23.322 1 50.15 ? C2 PGE 603 A 1 HETATM 4 O O2 PGE . . . D 3 -3.102 -37.124 -22.779 1 49.87 ? O2 PGE 603 A 1 HETATM 5 C C3 PGE . . . D 3 -1.78 -37.495 -22.442 1 50.8 ? C3 PGE 603 A 1 HETATM 6 C C4 PGE . . . D 3 -1.061 -36.284 -21.883 1 51.06 ? C4 PGE 603 A 1 HETATM 7 O O4 PGE . . . D 3 0.368 -37.727 -17.623 1 50.93 ? O4 PGE 603 A 1 HETATM 8 C C6 PGE . . . D 3 0.732 -37.071 -18.829 1 51.31 ? C6 PGE 603 A 1 HETATM 9 C C5 PGE . . . D 3 -0.385 -37.247 -19.837 1 51.78 ? C5 PGE 603 A 1 HETATM 10 O O3 PGE . . . D 3 0.021 -36.718 -21.083 1 52.13 ? O3 PGE 603 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #