data_6AA5 # _model_server_result.job_id GMzwPhKKaviTMlnJir7htQ _model_server_result.datetime_utc '2024-12-12 13:54:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6aa5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6AA5 # _exptl.entry_id 6AA5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 410.46 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,9-dihydroxy-8-methoxy-2,2-dimethyl-7-(3-methylbut-2-en-1-yl)-3,4-dihydro-2H,6H-pyrano[3,2-b]xanthen-6-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6AA5 _cell.length_a 67.086 _cell.length_b 67.086 _cell.length_c 141.016 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AA5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 103 A CYS 104 1_555 A SG CYS 103 A CYS 104 15_545 ? A ? ? A ? ? ? ? ? ? ? 2.053 ? disulf ? disulf2 A SG CYS 103 A CYS 104 1_555 A SG CYS 103 A CYS 104 15_545 ? B ? ? B ? ? ? ? ? ? ? 2.048 ? metalc ? metalc1 A OE1 GLU 40 A GLU 41 1_555 D ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc2 A ND1 HIS 64 A HIS 65 1_555 E ZN ZN . A ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc3 A OD2 ASP 81 A ASP 82 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? metalc ? metalc4 A NE2 HIS 83 A HIS 84 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc5 A SG CYS 86 A CYS 87 1_555 E ZN ZN . A ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc6 A ND1 HIS 158 A HIS 159 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc7 A NE2 HIS 160 A HIS 161 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc8 A NE2 HIS 161 A HIS 162 1_555 D ZN ZN . A ZN 203 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc9 A NE2 HIS 162 A HIS 163 1_555 D ZN ZN . A ZN 203 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc10 A NE2 HIS 163 A HIS 164 1_555 D ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc11 E ZN ZN . A ZN 204 1_555 G O HOH . A HOH 302 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc12 E ZN ZN . A ZN 204 1_555 G O HOH . A HOH 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? # _chem_comp.formula 'C24 H26 O6' _chem_comp.formula_weight 410.46 _chem_comp.id MKU _chem_comp.mon_nstd_flag . _chem_comp.name 5,9-dihydroxy-8-methoxy-2,2-dimethyl-7-(3-methylbut-2-en-1-yl)-3,4-dihydro-2H,6H-pyrano[3,2-b]xanthen-6-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-isomangostin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAB CAR MKU sing 237 n n CAC CAR MKU sing 238 n n CAR CAK MKU doub 239 n n CAA OAO MKU sing 240 n n CAK CAN MKU sing 241 n n OAO CAX MKU sing 242 n n CAN CAW MKU sing 243 n n CAX CAW MKU doub 244 n y CAX CAS MKU sing 245 n y CAW CBC MKU sing 246 n y OAG CAS MKU sing 247 n n OAF CAY MKU doub 248 n n CAS CAL MKU doub 249 n y CBC CAY MKU sing 250 n n CBC CAZ MKU doub 251 n y CAY CBB MKU sing 252 n n CAL CAZ MKU sing 253 n y CAZ OAQ MKU sing 254 n n OAH CAT MKU sing 255 n n CBB CAT MKU sing 256 n y CBB CBA MKU doub 257 n y CAT CAV MKU doub 258 n y OAQ CBA MKU sing 259 n n CBA CAM MKU sing 260 n y CAV CAI MKU sing 261 n n CAV CAU MKU sing 262 n y CAI CAJ MKU sing 263 n n CAM CAU MKU doub 264 n y CAU OAP MKU sing 265 n n CAJ CBD MKU sing 266 n n OAP CBD MKU sing 267 n n CBD CAE MKU sing 268 n n CBD CAD MKU sing 269 n n CAB H1 MKU sing 270 n n CAB H2 MKU sing 271 n n CAB H3 MKU sing 272 n n CAC H4 MKU sing 273 n n CAC H5 MKU sing 274 n n CAC H6 MKU sing 275 n n CAK H7 MKU sing 276 n n CAN H8 MKU sing 277 n n CAN H9 MKU sing 278 n n OAH H10 MKU sing 279 n n CAI H11 MKU sing 280 n n CAI H12 MKU sing 281 n n CAJ H13 MKU sing 282 n n CAJ H14 MKU sing 283 n n CAD H15 MKU sing 284 n n CAD H16 MKU sing 285 n n CAD H17 MKU sing 286 n n CAE H18 MKU sing 287 n n CAE H19 MKU sing 288 n n CAE H20 MKU sing 289 n n CAM H21 MKU sing 290 n n CAL H22 MKU sing 291 n n OAG H23 MKU sing 292 n n CAA H24 MKU sing 293 n n CAA H25 MKU sing 294 n n CAA H26 MKU sing 295 n n # _atom_sites.entry_id 6AA5 _atom_sites.fract_transf_matrix[1][1] 0.014906 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014906 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007091 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MKU A 1 201 201 MKU DRG . C 3 ZN A 1 202 202 ZN ZN . D 3 ZN A 1 203 203 ZN ZN . E 3 ZN A 1 204 204 ZN ZN . F 4 SO4 A 1 205 205 SO4 SO4 . G 5 HOH A 1 301 61 HOH HOH . G 5 HOH A 2 302 58 HOH HOH . G 5 HOH A 3 303 8 HOH HOH . G 5 HOH A 4 304 1 HOH HOH . G 5 HOH A 5 305 62 HOH HOH . G 5 HOH A 6 306 14 HOH HOH . G 5 HOH A 7 307 17 HOH HOH . G 5 HOH A 8 308 10 HOH HOH . G 5 HOH A 9 309 2 HOH HOH . G 5 HOH A 10 310 71 HOH HOH . G 5 HOH A 11 311 105 HOH HOH . G 5 HOH A 12 312 104 HOH HOH . G 5 HOH A 13 313 80 HOH HOH . G 5 HOH A 14 314 33 HOH HOH . G 5 HOH A 15 315 67 HOH HOH . G 5 HOH A 16 316 9 HOH HOH . G 5 HOH A 17 317 39 HOH HOH . G 5 HOH A 18 318 7 HOH HOH . G 5 HOH A 19 319 89 HOH HOH . G 5 HOH A 20 320 37 HOH HOH . G 5 HOH A 21 321 78 HOH HOH . G 5 HOH A 22 322 29 HOH HOH . G 5 HOH A 23 323 31 HOH HOH . G 5 HOH A 24 324 107 HOH HOH . G 5 HOH A 25 325 34 HOH HOH . G 5 HOH A 26 326 22 HOH HOH . G 5 HOH A 27 327 38 HOH HOH . G 5 HOH A 28 328 36 HOH HOH . G 5 HOH A 29 329 5 HOH HOH . G 5 HOH A 30 330 41 HOH HOH . G 5 HOH A 31 331 101 HOH HOH . G 5 HOH A 32 332 16 HOH HOH . G 5 HOH A 33 333 30 HOH HOH . G 5 HOH A 34 334 117 HOH HOH . G 5 HOH A 35 335 55 HOH HOH . G 5 HOH A 36 336 46 HOH HOH . G 5 HOH A 37 337 20 HOH HOH . G 5 HOH A 38 338 11 HOH HOH . G 5 HOH A 39 339 32 HOH HOH . G 5 HOH A 40 340 47 HOH HOH . G 5 HOH A 41 341 54 HOH HOH . G 5 HOH A 42 342 95 HOH HOH . G 5 HOH A 43 343 113 HOH HOH . G 5 HOH A 44 344 15 HOH HOH . G 5 HOH A 45 345 103 HOH HOH . G 5 HOH A 46 346 6 HOH HOH . G 5 HOH A 47 347 21 HOH HOH . G 5 HOH A 48 348 19 HOH HOH . G 5 HOH A 49 349 74 HOH HOH . G 5 HOH A 50 350 44 HOH HOH . G 5 HOH A 51 351 70 HOH HOH . G 5 HOH A 52 352 3 HOH HOH . G 5 HOH A 53 353 110 HOH HOH . G 5 HOH A 54 354 94 HOH HOH . G 5 HOH A 55 355 63 HOH HOH . G 5 HOH A 56 356 49 HOH HOH . G 5 HOH A 57 357 48 HOH HOH . G 5 HOH A 58 358 12 HOH HOH . G 5 HOH A 59 359 35 HOH HOH . G 5 HOH A 60 360 108 HOH HOH . G 5 HOH A 61 361 26 HOH HOH . G 5 HOH A 62 362 100 HOH HOH . G 5 HOH A 63 363 88 HOH HOH . G 5 HOH A 64 364 68 HOH HOH . G 5 HOH A 65 365 64 HOH HOH . G 5 HOH A 66 366 82 HOH HOH . G 5 HOH A 67 367 24 HOH HOH . G 5 HOH A 68 368 28 HOH HOH . G 5 HOH A 69 369 23 HOH HOH . G 5 HOH A 70 370 106 HOH HOH . G 5 HOH A 71 371 53 HOH HOH . G 5 HOH A 72 372 27 HOH HOH . G 5 HOH A 73 373 13 HOH HOH . G 5 HOH A 74 374 50 HOH HOH . G 5 HOH A 75 375 86 HOH HOH . G 5 HOH A 76 376 85 HOH HOH . G 5 HOH A 77 377 45 HOH HOH . G 5 HOH A 78 378 25 HOH HOH . G 5 HOH A 79 379 18 HOH HOH . G 5 HOH A 80 380 102 HOH HOH . G 5 HOH A 81 381 52 HOH HOH . G 5 HOH A 82 382 4 HOH HOH . G 5 HOH A 83 383 56 HOH HOH . G 5 HOH A 84 384 51 HOH HOH . G 5 HOH A 85 385 57 HOH HOH . G 5 HOH A 86 386 60 HOH HOH . G 5 HOH A 87 387 81 HOH HOH . G 5 HOH A 88 388 83 HOH HOH . G 5 HOH A 89 389 59 HOH HOH . G 5 HOH A 90 390 87 HOH HOH . G 5 HOH A 91 391 69 HOH HOH . G 5 HOH A 92 392 90 HOH HOH . G 5 HOH A 93 393 84 HOH HOH . G 5 HOH A 94 394 116 HOH HOH . G 5 HOH A 95 395 119 HOH HOH . G 5 HOH A 96 396 43 HOH HOH . G 5 HOH A 97 397 96 HOH HOH . G 5 HOH A 98 398 65 HOH HOH . G 5 HOH A 99 399 93 HOH HOH . G 5 HOH A 100 400 79 HOH HOH . G 5 HOH A 101 401 73 HOH HOH . G 5 HOH A 102 402 66 HOH HOH . G 5 HOH A 103 403 109 HOH HOH . G 5 HOH A 104 404 40 HOH HOH . G 5 HOH A 105 405 118 HOH HOH . G 5 HOH A 106 406 75 HOH HOH . G 5 HOH A 107 407 111 HOH HOH . G 5 HOH A 108 408 42 HOH HOH . G 5 HOH A 109 409 120 HOH HOH . G 5 HOH A 110 410 91 HOH HOH . G 5 HOH A 111 411 115 HOH HOH . G 5 HOH A 112 412 98 HOH HOH . G 5 HOH A 113 413 114 HOH HOH . G 5 HOH A 114 414 97 HOH HOH . G 5 HOH A 115 415 72 HOH HOH . G 5 HOH A 116 416 112 HOH HOH . G 5 HOH A 117 417 92 HOH HOH . G 5 HOH A 118 418 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAB MKU . . . B 2 22.793 -16.076 18.128 1 25.74 ? CAB MKU 201 A 1 HETATM 2 C CAR MKU . . . B 2 23.16 -15.612 16.712 1 29.14 ? CAR MKU 201 A 1 HETATM 3 C CAC MKU . . . B 2 22.739 -16.454 15.514 1 32.28 ? CAC MKU 201 A 1 HETATM 4 C CAK MKU . . . B 2 23.948 -14.321 16.476 1 29.93 ? CAK MKU 201 A 1 HETATM 5 C CAN MKU . . . B 2 24.306 -13.53 17.724 1 23.4 ? CAN MKU 201 A 1 HETATM 6 C CAW MKU . . . B 2 24.075 -12.151 17.573 1 20.35 ? CAW MKU 201 A 1 HETATM 7 C CBC MKU . . . B 2 25.05 -11.189 17.184 1 21.52 ? CBC MKU 201 A 1 HETATM 8 C CAY MKU . . . B 2 26.391 -11.48 16.843 1 25.25 ? CAY MKU 201 A 1 HETATM 9 O OAF MKU . . . B 2 26.836 -12.626 16.788 1 24.13 ? OAF MKU 201 A 1 HETATM 10 C CBB MKU . . . B 2 27.255 -10.436 16.523 1 25.83 ? CBB MKU 201 A 1 HETATM 11 C CAT MKU . . . B 2 28.592 -10.688 16.233 1 33.01 ? CAT MKU 201 A 1 HETATM 12 O OAH MKU . . . B 2 29.037 -11.973 16.26 1 30.73 ? OAH MKU 201 A 1 HETATM 13 C CAV MKU . . . B 2 29.5 -9.684 15.923 1 40.21 ? CAV MKU 201 A 1 HETATM 14 C CAI MKU . . . B 2 30.827 -10.034 15.653 1 46.86 ? CAI MKU 201 A 1 HETATM 15 C CAJ MKU . . . B 2 31.478 -8.988 14.775 1 49.99 ? CAJ MKU 201 A 1 HETATM 16 C CBD MKU . . . B 2 31.326 -7.662 15.488 1 53.07 ? CBD MKU 201 A 1 HETATM 17 C CAD MKU . . . B 2 31.967 -7.745 16.884 1 56.95 ? CAD MKU 201 A 1 HETATM 18 C CAE MKU . . . B 2 32.033 -6.558 14.692 1 52.53 ? CAE MKU 201 A 1 HETATM 19 O OAP MKU . . . B 2 29.907 -7.345 15.593 1 45.48 ? OAP MKU 201 A 1 HETATM 20 C CAU MKU . . . B 2 29.043 -8.36 15.911 1 38.72 ? CAU MKU 201 A 1 HETATM 21 C CAM MKU . . . B 2 27.705 -8.081 16.187 1 30.54 ? CAM MKU 201 A 1 HETATM 22 C CBA MKU . . . B 2 26.83 -9.119 16.492 1 25.5 ? CBA MKU 201 A 1 HETATM 23 O OAQ MKU . . . B 2 25.523 -8.86 16.76 1 28.46 ? OAQ MKU 201 A 1 HETATM 24 C CAZ MKU . . . B 2 24.641 -9.847 17.115 1 23.3 ? CAZ MKU 201 A 1 HETATM 25 C CAL MKU . . . B 2 23.346 -9.44 17.408 1 22.76 ? CAL MKU 201 A 1 HETATM 26 C CAS MKU . . . B 2 22.411 -10.378 17.788 1 21.8 ? CAS MKU 201 A 1 HETATM 27 O OAG MKU . . . B 2 21.131 -10.014 18.08 1 22.66 ? OAG MKU 201 A 1 HETATM 28 C CAX MKU . . . B 2 22.778 -11.716 17.86 1 20 ? CAX MKU 201 A 1 HETATM 29 O OAO MKU . . . B 2 21.851 -12.645 18.249 1 22.9 ? OAO MKU 201 A 1 HETATM 30 C CAA MKU . . . B 2 20.858 -12.965 17.261 1 20.62 ? CAA MKU 201 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #