data_6AB6 # _model_server_result.job_id xO6CywsD-5U_T0wVLJN6kQ _model_server_result.datetime_utc '2025-03-04 08:44:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ab6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":402}' # _entry.id 6AB6 # _exptl.entry_id 6AB6 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6AB6 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AB6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 180-meric 180 'complete icosahedral assembly' 1 ? trimeric 3 'icosahedral asymmetric unit' 2 ? pentadecameric 15 'icosahedral pentamer' 3 ? octadecameric 18 'icosahedral 23 hexamer' 4 ? trimeric 3 'icosahedral asymmetric unit, std point frame' 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 (1-60) A,B,C,D,E,F,G,H,I 2 1 A,B,C,D,E,F,G,H,I 3 (1-5) A,B,C,D,E,F,G,H,I 4 (1,2,6,10,23,24) A,B,C,D,E,F,G,H,I 5 P # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 0.309017 0.5 -0.809017 0.809017 0.309017 0.5 0.5 -0.809017 -0.309017 0.35571 0.90887 0.56558 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.809017 -0.309017 -0.5 -0.309017 0.5 -0.809017 0.5 0.809017 0.309017 -0.21173 -0.34258 0.57054 3 'point symmetry operation' ? ? 0.5 -0.809017 -0.309017 -0.809017 -0.309017 -0.5 0.309017 0.5 -0.809017 -0.56242 -0.91002 0.36382 4 'point symmetry operation' ? ? 0.5 -0.809017 0.309017 -0.809017 -0.309017 0.5 -0.309017 -0.5 -0.809017 -0.56744 -0.91813 -0.33447 5 'point symmetry operation' ? ? 0.809017 -0.309017 0.5 -0.309017 0.5 0.809017 -0.5 -0.809017 0.309017 -0.21984 -0.35571 -0.55932 6 'point symmetry operation' ? ? -0.5 -0.809017 -0.309017 -0.809017 0.309017 0.5 -0.309017 0.5 -0.809017 -1.69042 -0.91742 -0.33332 7 'point symmetry operation' ? ? -0.309017 -0.5 0.809017 -0.5 0.809017 0.309017 -0.809017 -0.309017 -0.5 -1.48371 -0.56673 -0.90076 8 'point symmetry operation' ? ? 0.309017 0.5 0.809017 -0.5 0.809017 -0.309017 -0.809017 -0.309017 0.5 -0.78542 -0.56171 -0.90887 9 'point symmetry operation' ? ? 0.5 0.809017 -0.309017 -0.809017 0.309017 -0.5 -0.309017 0.5 0.809017 -0.56057 -0.90931 -0.34645 10 'point symmetry operation' ? ? 0 0 -1 -1 0 0 0 1 0 -1.11989 -1.12915 0.00926 11 'point symmetry operation' ? ? 0.309017 0.5 0.809017 0.5 -0.809017 0.309017 0.809017 0.309017 -0.5 -0.78542 0.55942 0.9251 12 'point symmetry operation' ? ? 0.5 0.809017 -0.309017 0.809017 -0.309017 0.5 0.309017 -0.5 -0.809017 -0.56057 0.90701 0.36268 13 'point symmetry operation' ? ? 0 0 -1 1 0 0 0 -1 0 -1.11989 1.12685 0.00697 14 'point symmetry operation' ? ? -0.5 -0.809017 -0.309017 0.809017 -0.309017 -0.5 0.309017 -0.5 0.809017 -1.69042 0.91513 0.34955 15 'point symmetry operation' ? ? -0.309017 -0.5 0.809017 0.5 -0.809017 -0.309017 0.809017 0.309017 0.5 -1.48371 0.56443 0.91698 16 'point symmetry operation' ? ? -0.809017 0.309017 -0.5 0.309017 -0.5 -0.809017 -0.5 -0.809017 0.309017 -2.03616 0.35342 -0.55932 17 'point symmetry operation' ? ? -1 0 0 0 -1 0 0 0 1 -2.256 -0.00229 0 18 'point symmetry operation' ? ? -0.809017 0.309017 0.5 0.309017 -0.5 0.809017 0.5 0.809017 0.309017 -2.04428 0.34029 0.57054 19 'point symmetry operation' ? ? -0.5 0.809017 0.309017 0.809017 0.309017 0.5 0.309017 0.5 -0.809017 -1.69358 0.90772 0.36382 20 'point symmetry operation' ? ? -0.5 0.809017 -0.309017 0.809017 0.309017 -0.5 -0.309017 -0.5 -0.809017 -1.68857 0.91584 -0.33447 21 'point symmetry operation' ? ? 0.809017 0.309017 -0.5 -0.309017 -0.5 -0.809017 -0.5 0.809017 -0.309017 -0.21102 -0.34373 -0.55245 22 'point symmetry operation' ? ? 0.309017 -0.5 -0.809017 -0.5 -0.809017 0.309017 -0.809017 0.309017 -0.5 -0.77344 -0.56858 -0.90005 23 'point symmetry operation' ? ? 0 -1 0 0 0 1 -1 0 0 -1.12915 -0.00926 -1.11989 24 'point symmetry operation' ? ? 0.309017 -0.5 0.809017 0.5 0.809017 0.309017 -0.809017 0.309017 0.5 -0.78657 0.56127 -0.90816 25 'point symmetry operation' ? ? 0.809017 0.309017 0.5 0.309017 0.5 -0.809017 -0.5 0.809017 0.309017 -0.21913 0.35456 -0.55747 26 'point symmetry operation' ? ? -0.5 -0.809017 0.309017 0.809017 -0.309017 0.5 -0.309017 0.5 0.809017 -1.69544 0.90701 -0.34645 27 'point symmetry operation' ? ? 0 0 1 1 0 0 0 1 0 -1.13612 1.12685 0.00926 28 'point symmetry operation' ? ? 0.5 0.809017 0.309017 0.809017 -0.309017 -0.5 -0.309017 0.5 -0.809017 -0.56558 0.91513 -0.33332 29 'point symmetry operation' ? ? 0.309017 0.5 -0.809017 0.5 -0.809017 -0.309017 -0.809017 -0.309017 -0.5 -0.77229 0.56443 -0.90076 30 'point symmetry operation' ? ? -0.309017 -0.5 -0.809017 0.5 -0.809017 0.309017 -0.809017 -0.309017 0.5 -1.47058 0.55942 -0.90887 31 'point symmetry operation' ? ? 0 0 1 -1 0 0 0 -1 0 -1.13612 -1.12915 0.00697 32 'point symmetry operation' ? ? 0.5 0.809017 0.309017 -0.809017 0.309017 0.5 0.309017 -0.5 0.809017 -0.56558 -0.91742 0.34955 33 'point symmetry operation' ? ? 0.309017 0.5 -0.809017 -0.5 0.809017 0.309017 0.809017 0.309017 0.5 -0.77229 -0.56673 0.91698 34 'point symmetry operation' ? ? -0.309017 -0.5 -0.809017 -0.5 0.809017 -0.309017 0.809017 0.309017 -0.5 -1.47058 -0.56171 0.9251 35 'point symmetry operation' ? ? -0.5 -0.809017 0.309017 -0.809017 0.309017 -0.5 0.309017 -0.5 -0.809017 -1.69544 -0.90931 0.36268 36 'point symmetry operation' ? ? -0.309017 0.5 -0.809017 0.5 0.809017 0.309017 0.809017 -0.309017 -0.5 -1.46944 0.56127 0.92439 37 'point symmetry operation' ? ? -0.809017 -0.309017 -0.5 0.309017 0.5 -0.809017 0.5 -0.809017 -0.309017 -2.03687 0.35456 0.57369 38 'point symmetry operation' ? ? -0.809017 -0.309017 0.5 -0.309017 -0.5 -0.809017 0.5 -0.809017 0.309017 -2.04499 -0.34373 0.56868 39 'point symmetry operation' ? ? -0.309017 0.5 0.809017 -0.5 -0.809017 0.309017 0.809017 -0.309017 0.5 -1.48256 -0.56858 0.91628 40 'point symmetry operation' ? ? 0 1 0 0 0 1 1 0 0 -1.12685 -0.00926 1.13612 41 'point symmetry operation' ? ? 0.809017 -0.309017 -0.5 0.309017 -0.5 0.809017 -0.5 -0.809017 -0.309017 -0.21173 0.34029 -0.55431 42 'point symmetry operation' ? ? 0.5 -0.809017 -0.309017 0.809017 0.309017 0.5 -0.309017 -0.5 0.809017 -0.56242 0.90772 -0.3476 43 'point symmetry operation' ? ? 0.5 -0.809017 0.309017 0.809017 0.309017 -0.5 0.309017 0.5 0.809017 -0.56744 0.91584 0.3507 44 'point symmetry operation' ? ? 0.809017 -0.309017 0.5 0.309017 -0.5 -0.809017 0.5 0.809017 -0.309017 -0.21984 0.35342 0.57555 45 'point symmetry operation' ? ? 1 0 0 0 -1 0 0 0 -1 0 -0.00229 0.01623 46 'point symmetry operation' ? ? 0 -1 0 0 0 -1 1 0 0 -1.12915 0.00697 1.13612 47 'point symmetry operation' ? ? 0.309017 -0.5 0.809017 -0.5 -0.809017 -0.309017 0.809017 -0.309017 -0.5 -0.78657 -0.56357 0.92439 48 'point symmetry operation' ? ? 0.809017 0.309017 0.5 -0.309017 -0.5 0.809017 0.5 -0.809017 -0.309017 -0.21913 -0.35686 0.57369 49 'point symmetry operation' ? ? 0.809017 0.309017 -0.5 0.309017 0.5 0.809017 0.5 -0.809017 0.309017 -0.21102 0.34143 0.56868 50 'point symmetry operation' ? ? 0.309017 -0.5 -0.809017 0.5 0.809017 -0.309017 0.809017 -0.309017 0.5 -0.77344 0.56629 0.91628 51 'point symmetry operation' ? ? -0.309017 0.5 0.809017 0.5 0.809017 -0.309017 -0.809017 0.309017 -0.5 -1.48256 0.56629 -0.90005 52 'point symmetry operation' ? ? 0 1 0 0 0 -1 -1 0 0 -1.12685 0.00697 -1.11989 53 'point symmetry operation' ? ? -0.309017 0.5 -0.809017 -0.5 -0.809017 -0.309017 -0.809017 0.309017 0.5 -1.46944 -0.56357 -0.90816 54 'point symmetry operation' ? ? -0.809017 -0.309017 -0.5 -0.309017 -0.5 0.809017 -0.5 0.809017 0.309017 -2.03687 -0.35686 -0.55747 55 'point symmetry operation' ? ? -0.809017 -0.309017 0.5 0.309017 0.5 0.809017 -0.5 0.809017 -0.309017 -2.04499 0.34143 -0.55245 56 'point symmetry operation' ? ? -0.5 0.809017 -0.309017 -0.809017 -0.309017 0.5 0.309017 0.5 0.809017 -1.68857 -0.91813 0.3507 57 'point symmetry operation' ? ? -0.809017 0.309017 -0.5 -0.309017 0.5 0.809017 0.5 0.809017 -0.309017 -2.03616 -0.35571 0.57555 58 'point symmetry operation' ? ? -1 0 0 0 1 0 0 0 -1 -2.256 0 0.01623 59 'point symmetry operation' ? ? -0.809017 0.309017 0.5 -0.309017 0.5 -0.809017 -0.5 -0.809017 -0.309017 -2.04428 -0.34258 -0.55431 60 'point symmetry operation' ? ? -0.5 0.809017 0.309017 -0.809017 -0.309017 -0.5 -0.309017 -0.5 0.809017 -1.69358 -0.91002 -0.3476 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 118 A GLU 118 1_555 F CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc2 A OD1 ASP 146 A ASP 146 1_555 E CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc3 A OD2 ASP 146 A ASP 146 1_555 E CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.024 ? metalc ? metalc4 A OD2 ASP 148 A ASP 148 1_555 D CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc5 A OD1 ASP 151 A ASP 151 1_555 D CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc6 A OD2 ASP 151 A ASP 151 1_555 D CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc7 A OD2 ASP 151 A ASP 151 1_555 E CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc8 A OE1 GLN 248 A GLN 248 1_555 F CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc9 D CA CA . A CA 401 1_555 B OE1 GLU 118 B GLU 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc10 E CA CA . A CA 402 1_555 B OE2 GLU 118 B GLU 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc11 E CA CA . A CA 402 1_555 B OE1 GLN 248 B GLN 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.999 ? metalc ? metalc12 F CA CA . A CA 403 1_555 C OD1 ASP 146 C ASP 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc13 F CA CA . A CA 403 1_555 C OD2 ASP 146 C ASP 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc14 F CA CA . A CA 403 1_555 C OD2 ASP 151 C ASP 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc15 B OD1 ASP 146 B ASP 146 1_555 G CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc16 B OD2 ASP 148 B ASP 148 1_555 H CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc17 B OD2 ASP 151 B ASP 151 1_555 G CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc18 B OD1 ASP 151 B ASP 151 1_555 H CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? metalc ? metalc19 B OD2 ASP 151 B ASP 151 1_555 H CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc20 G CA CA . B CA 401 1_555 C OE2 GLU 118 C GLU 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc21 G CA CA . B CA 401 1_555 C OE1 GLN 248 C GLN 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc22 C OD2 ASP 148 C ASP 148 1_555 I CA CA . C CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc23 C OD1 ASP 151 C ASP 151 1_555 I CA CA . C CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.837 ? metalc ? metalc24 C OD2 ASP 151 C ASP 151 1_555 I CA CA . C CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6AB6 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 CA A 1 401 1 CA CA . E 2 CA A 1 402 6 CA CA . F 2 CA A 1 403 2 CA CA . G 2 CA B 1 401 3 CA CA . H 2 CA B 1 402 4 CA CA . I 2 CA C 1 401 5 CA CA . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 2 _atom_site.Cartn_x 73.992 _atom_site.Cartn_y -97.305 _atom_site.Cartn_z -36.163 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 115.33 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 402 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #