data_6ABI # _model_server_result.job_id H0ZZpfORpGUrDKtY1gpnag _model_server_result.datetime_utc '2024-11-24 04:02:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6abi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":407}' # _entry.id 6ABI # _exptl.entry_id 6ABI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ABI _cell.length_a 116.29 _cell.length_b 116.29 _cell.length_c 234.4 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ABI _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6ABI _atom_sites.fract_transf_matrix[1][1] 0.008599 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008599 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004266 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 401 1 SO4 SO4 . D 2 SO4 A 1 402 2 SO4 SO4 . E 2 SO4 A 1 403 3 SO4 SO4 . F 2 SO4 A 1 404 7 SO4 SO4 . G 3 GOL A 1 405 1 GOL GOL . H 2 SO4 B 1 401 4 SO4 SO4 . I 2 SO4 B 1 402 5 SO4 SO4 . J 2 SO4 B 1 403 6 SO4 SO4 . K 2 SO4 B 1 404 8 SO4 SO4 . L 3 GOL B 1 405 2 GOL GOL . M 3 GOL B 1 406 3 GOL GOL . N 3 GOL B 1 407 4 GOL GOL . O 3 GOL B 1 408 5 GOL GOL . P 3 GOL B 1 409 6 GOL GOL . Q 3 GOL B 1 410 7 GOL GOL . R 3 GOL B 1 411 8 GOL GOL . S 4 HOH A 1 501 257 HOH HOH . S 4 HOH A 2 502 95 HOH HOH . S 4 HOH A 3 503 201 HOH HOH . S 4 HOH A 4 504 117 HOH HOH . S 4 HOH A 5 505 70 HOH HOH . S 4 HOH A 6 506 66 HOH HOH . S 4 HOH A 7 507 47 HOH HOH . S 4 HOH A 8 508 67 HOH HOH . S 4 HOH A 9 509 38 HOH HOH . S 4 HOH A 10 510 77 HOH HOH . S 4 HOH A 11 511 272 HOH HOH . S 4 HOH A 12 512 119 HOH HOH . S 4 HOH A 13 513 35 HOH HOH . S 4 HOH A 14 514 92 HOH HOH . S 4 HOH A 15 515 218 HOH HOH . S 4 HOH A 16 516 69 HOH HOH . S 4 HOH A 17 517 122 HOH HOH . S 4 HOH A 18 518 297 HOH HOH . S 4 HOH A 19 519 41 HOH HOH . S 4 HOH A 20 520 46 HOH HOH . S 4 HOH A 21 521 124 HOH HOH . S 4 HOH A 22 522 2 HOH HOH . S 4 HOH A 23 523 31 HOH HOH . S 4 HOH A 24 524 23 HOH HOH . S 4 HOH A 25 525 85 HOH HOH . S 4 HOH A 26 526 12 HOH HOH . S 4 HOH A 27 527 93 HOH HOH . S 4 HOH A 28 528 82 HOH HOH . S 4 HOH A 29 529 65 HOH HOH . S 4 HOH A 30 530 269 HOH HOH . S 4 HOH A 31 531 50 HOH HOH . S 4 HOH A 32 532 59 HOH HOH . S 4 HOH A 33 533 60 HOH HOH . S 4 HOH A 34 534 29 HOH HOH . S 4 HOH A 35 535 9 HOH HOH . S 4 HOH A 36 536 91 HOH HOH . S 4 HOH A 37 537 14 HOH HOH . S 4 HOH A 38 538 71 HOH HOH . S 4 HOH A 39 539 136 HOH HOH . S 4 HOH A 40 540 22 HOH HOH . S 4 HOH A 41 541 161 HOH HOH . S 4 HOH A 42 542 32 HOH HOH . S 4 HOH A 43 543 280 HOH HOH . S 4 HOH A 44 544 57 HOH HOH . S 4 HOH A 45 545 1 HOH HOH . S 4 HOH A 46 546 64 HOH HOH . S 4 HOH A 47 547 24 HOH HOH . S 4 HOH A 48 548 36 HOH HOH . S 4 HOH A 49 549 259 HOH HOH . S 4 HOH A 50 550 48 HOH HOH . S 4 HOH A 51 551 34 HOH HOH . S 4 HOH A 52 552 78 HOH HOH . S 4 HOH A 53 553 88 HOH HOH . S 4 HOH A 54 554 44 HOH HOH . S 4 HOH A 55 555 83 HOH HOH . S 4 HOH A 56 556 16 HOH HOH . S 4 HOH A 57 557 267 HOH HOH . S 4 HOH A 58 558 79 HOH HOH . S 4 HOH A 59 559 42 HOH HOH . S 4 HOH A 60 560 118 HOH HOH . S 4 HOH A 61 561 30 HOH HOH . S 4 HOH A 62 562 39 HOH HOH . S 4 HOH A 63 563 111 HOH HOH . S 4 HOH A 64 564 62 HOH HOH . S 4 HOH A 65 565 61 HOH HOH . S 4 HOH A 66 566 51 HOH HOH . S 4 HOH A 67 567 264 HOH HOH . S 4 HOH A 68 568 17 HOH HOH . S 4 HOH A 69 569 104 HOH HOH . S 4 HOH A 70 570 19 HOH HOH . S 4 HOH A 71 571 262 HOH HOH . S 4 HOH A 72 572 113 HOH HOH . S 4 HOH A 73 573 18 HOH HOH . S 4 HOH A 74 574 81 HOH HOH . S 4 HOH A 75 575 33 HOH HOH . S 4 HOH A 76 576 98 HOH HOH . S 4 HOH A 77 577 13 HOH HOH . S 4 HOH A 78 578 53 HOH HOH . S 4 HOH A 79 579 27 HOH HOH . S 4 HOH A 80 580 49 HOH HOH . S 4 HOH A 81 581 37 HOH HOH . S 4 HOH A 82 582 276 HOH HOH . S 4 HOH A 83 583 260 HOH HOH . S 4 HOH A 84 584 282 HOH HOH . S 4 HOH A 85 585 302 HOH HOH . S 4 HOH A 86 586 15 HOH HOH . S 4 HOH A 87 587 26 HOH HOH . S 4 HOH A 88 588 90 HOH HOH . S 4 HOH A 89 589 303 HOH HOH . S 4 HOH A 90 590 166 HOH HOH . S 4 HOH A 91 591 40 HOH HOH . S 4 HOH A 92 592 68 HOH HOH . S 4 HOH A 93 593 8 HOH HOH . S 4 HOH A 94 594 55 HOH HOH . S 4 HOH A 95 595 109 HOH HOH . S 4 HOH A 96 596 145 HOH HOH . S 4 HOH A 97 597 126 HOH HOH . S 4 HOH A 98 598 6 HOH HOH . S 4 HOH A 99 599 258 HOH HOH . S 4 HOH A 100 600 114 HOH HOH . S 4 HOH A 101 601 28 HOH HOH . S 4 HOH A 102 602 76 HOH HOH . S 4 HOH A 103 603 58 HOH HOH . S 4 HOH A 104 604 120 HOH HOH . S 4 HOH A 105 605 25 HOH HOH . S 4 HOH A 106 606 75 HOH HOH . S 4 HOH A 107 607 94 HOH HOH . S 4 HOH A 108 608 56 HOH HOH . S 4 HOH A 109 609 21 HOH HOH . S 4 HOH A 110 610 89 HOH HOH . S 4 HOH A 111 611 271 HOH HOH . S 4 HOH A 112 612 101 HOH HOH . S 4 HOH A 113 613 11 HOH HOH . S 4 HOH A 114 614 107 HOH HOH . S 4 HOH A 115 615 223 HOH HOH . S 4 HOH A 116 616 270 HOH HOH . S 4 HOH A 117 617 87 HOH HOH . S 4 HOH A 118 618 54 HOH HOH . S 4 HOH A 119 619 106 HOH HOH . S 4 HOH A 120 620 43 HOH HOH . S 4 HOH A 121 621 115 HOH HOH . S 4 HOH A 122 622 45 HOH HOH . S 4 HOH A 123 623 123 HOH HOH . S 4 HOH A 124 624 112 HOH HOH . S 4 HOH A 125 625 4 HOH HOH . S 4 HOH A 126 626 80 HOH HOH . S 4 HOH A 127 627 281 HOH HOH . S 4 HOH A 128 628 129 HOH HOH . S 4 HOH A 129 629 84 HOH HOH . S 4 HOH A 130 630 20 HOH HOH . S 4 HOH A 131 631 86 HOH HOH . S 4 HOH A 132 632 116 HOH HOH . S 4 HOH A 133 633 63 HOH HOH . S 4 HOH A 134 634 73 HOH HOH . S 4 HOH A 135 635 121 HOH HOH . S 4 HOH A 136 636 110 HOH HOH . S 4 HOH A 137 637 288 HOH HOH . S 4 HOH A 138 638 105 HOH HOH . S 4 HOH A 139 639 128 HOH HOH . S 4 HOH A 140 640 290 HOH HOH . S 4 HOH A 141 641 100 HOH HOH . S 4 HOH A 142 642 97 HOH HOH . S 4 HOH A 143 643 229 HOH HOH . S 4 HOH A 144 644 3 HOH HOH . S 4 HOH A 145 645 298 HOH HOH . S 4 HOH A 146 646 96 HOH HOH . S 4 HOH A 147 647 99 HOH HOH . S 4 HOH A 148 648 274 HOH HOH . S 4 HOH A 149 649 72 HOH HOH . S 4 HOH A 150 650 236 HOH HOH . S 4 HOH A 151 651 287 HOH HOH . S 4 HOH A 152 652 299 HOH HOH . S 4 HOH A 153 653 127 HOH HOH . S 4 HOH A 154 654 103 HOH HOH . S 4 HOH A 155 655 301 HOH HOH . S 4 HOH A 156 656 289 HOH HOH . S 4 HOH A 157 657 125 HOH HOH . T 4 HOH B 1 501 246 HOH HOH . T 4 HOH B 2 502 172 HOH HOH . T 4 HOH B 3 503 278 HOH HOH . T 4 HOH B 4 504 250 HOH HOH . T 4 HOH B 5 505 195 HOH HOH . T 4 HOH B 6 506 209 HOH HOH . T 4 HOH B 7 507 292 HOH HOH . T 4 HOH B 8 508 231 HOH HOH . T 4 HOH B 9 509 153 HOH HOH . T 4 HOH B 10 510 286 HOH HOH . T 4 HOH B 11 511 300 HOH HOH . T 4 HOH B 12 512 261 HOH HOH . T 4 HOH B 13 513 230 HOH HOH . T 4 HOH B 14 514 279 HOH HOH . T 4 HOH B 15 515 182 HOH HOH . T 4 HOH B 16 516 239 HOH HOH . T 4 HOH B 17 517 242 HOH HOH . T 4 HOH B 18 518 189 HOH HOH . T 4 HOH B 19 519 154 HOH HOH . T 4 HOH B 20 520 184 HOH HOH . T 4 HOH B 21 521 304 HOH HOH . T 4 HOH B 22 522 205 HOH HOH . T 4 HOH B 23 523 160 HOH HOH . T 4 HOH B 24 524 248 HOH HOH . T 4 HOH B 25 525 291 HOH HOH . T 4 HOH B 26 526 142 HOH HOH . T 4 HOH B 27 527 137 HOH HOH . T 4 HOH B 28 528 176 HOH HOH . T 4 HOH B 29 529 295 HOH HOH . T 4 HOH B 30 530 255 HOH HOH . T 4 HOH B 31 531 220 HOH HOH . T 4 HOH B 32 532 265 HOH HOH . T 4 HOH B 33 533 134 HOH HOH . T 4 HOH B 34 534 253 HOH HOH . T 4 HOH B 35 535 273 HOH HOH . T 4 HOH B 36 536 157 HOH HOH . T 4 HOH B 37 537 150 HOH HOH . T 4 HOH B 38 538 159 HOH HOH . T 4 HOH B 39 539 206 HOH HOH . T 4 HOH B 40 540 155 HOH HOH . T 4 HOH B 41 541 131 HOH HOH . T 4 HOH B 42 542 219 HOH HOH . T 4 HOH B 43 543 135 HOH HOH . T 4 HOH B 44 544 207 HOH HOH . T 4 HOH B 45 545 202 HOH HOH . T 4 HOH B 46 546 167 HOH HOH . T 4 HOH B 47 547 140 HOH HOH . T 4 HOH B 48 548 171 HOH HOH . T 4 HOH B 49 549 199 HOH HOH . T 4 HOH B 50 550 178 HOH HOH . T 4 HOH B 51 551 294 HOH HOH . T 4 HOH B 52 552 133 HOH HOH . T 4 HOH B 53 553 212 HOH HOH . T 4 HOH B 54 554 173 HOH HOH . T 4 HOH B 55 555 139 HOH HOH . T 4 HOH B 56 556 275 HOH HOH . T 4 HOH B 57 557 226 HOH HOH . T 4 HOH B 58 558 277 HOH HOH . T 4 HOH B 59 559 146 HOH HOH . T 4 HOH B 60 560 163 HOH HOH . T 4 HOH B 61 561 169 HOH HOH . T 4 HOH B 62 562 180 HOH HOH . T 4 HOH B 63 563 240 HOH HOH . T 4 HOH B 64 564 268 HOH HOH . T 4 HOH B 65 565 168 HOH HOH . T 4 HOH B 66 566 156 HOH HOH . T 4 HOH B 67 567 147 HOH HOH . T 4 HOH B 68 568 141 HOH HOH . T 4 HOH B 69 569 254 HOH HOH . T 4 HOH B 70 570 192 HOH HOH . T 4 HOH B 71 571 102 HOH HOH . T 4 HOH B 72 572 7 HOH HOH . T 4 HOH B 73 573 237 HOH HOH . T 4 HOH B 74 574 130 HOH HOH . T 4 HOH B 75 575 211 HOH HOH . T 4 HOH B 76 576 198 HOH HOH . T 4 HOH B 77 577 188 HOH HOH . T 4 HOH B 78 578 151 HOH HOH . T 4 HOH B 79 579 214 HOH HOH . T 4 HOH B 80 580 186 HOH HOH . T 4 HOH B 81 581 204 HOH HOH . T 4 HOH B 82 582 190 HOH HOH . T 4 HOH B 83 583 165 HOH HOH . T 4 HOH B 84 584 162 HOH HOH . T 4 HOH B 85 585 210 HOH HOH . T 4 HOH B 86 586 144 HOH HOH . T 4 HOH B 87 587 74 HOH HOH . T 4 HOH B 88 588 216 HOH HOH . T 4 HOH B 89 589 164 HOH HOH . T 4 HOH B 90 590 149 HOH HOH . T 4 HOH B 91 591 143 HOH HOH . T 4 HOH B 92 592 191 HOH HOH . T 4 HOH B 93 593 203 HOH HOH . T 4 HOH B 94 594 215 HOH HOH . T 4 HOH B 95 595 158 HOH HOH . T 4 HOH B 96 596 177 HOH HOH . T 4 HOH B 97 597 225 HOH HOH . T 4 HOH B 98 598 208 HOH HOH . T 4 HOH B 99 599 179 HOH HOH . T 4 HOH B 100 600 266 HOH HOH . T 4 HOH B 101 601 187 HOH HOH . T 4 HOH B 102 602 10 HOH HOH . T 4 HOH B 103 603 5 HOH HOH . T 4 HOH B 104 604 252 HOH HOH . T 4 HOH B 105 605 249 HOH HOH . T 4 HOH B 106 606 213 HOH HOH . T 4 HOH B 107 607 193 HOH HOH . T 4 HOH B 108 608 52 HOH HOH . T 4 HOH B 109 609 263 HOH HOH . T 4 HOH B 110 610 244 HOH HOH . T 4 HOH B 111 611 152 HOH HOH . T 4 HOH B 112 612 148 HOH HOH . T 4 HOH B 113 613 196 HOH HOH . T 4 HOH B 114 614 174 HOH HOH . T 4 HOH B 115 615 227 HOH HOH . T 4 HOH B 116 616 132 HOH HOH . T 4 HOH B 117 617 183 HOH HOH . T 4 HOH B 118 618 221 HOH HOH . T 4 HOH B 119 619 170 HOH HOH . T 4 HOH B 120 620 224 HOH HOH . T 4 HOH B 121 621 200 HOH HOH . T 4 HOH B 122 622 138 HOH HOH . T 4 HOH B 123 623 232 HOH HOH . T 4 HOH B 124 624 175 HOH HOH . T 4 HOH B 125 625 181 HOH HOH . T 4 HOH B 126 626 247 HOH HOH . T 4 HOH B 127 627 194 HOH HOH . T 4 HOH B 128 628 296 HOH HOH . T 4 HOH B 129 629 256 HOH HOH . T 4 HOH B 130 630 197 HOH HOH . T 4 HOH B 131 631 284 HOH HOH . T 4 HOH B 132 632 241 HOH HOH . T 4 HOH B 133 633 245 HOH HOH . T 4 HOH B 134 634 185 HOH HOH . T 4 HOH B 135 635 251 HOH HOH . T 4 HOH B 136 636 238 HOH HOH . T 4 HOH B 137 637 285 HOH HOH . T 4 HOH B 138 638 222 HOH HOH . T 4 HOH B 139 639 293 HOH HOH . T 4 HOH B 140 640 228 HOH HOH . T 4 HOH B 141 641 283 HOH HOH . T 4 HOH B 142 642 234 HOH HOH . T 4 HOH B 143 643 243 HOH HOH . T 4 HOH B 144 644 235 HOH HOH . T 4 HOH B 145 645 233 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . N 3 24.349 49.437 11.371 0.9 46.48 ? C1 GOL 407 B 1 HETATM 2 O O1 GOL . . . N 3 25.595 50.111 11.148 0.9 39.17 ? O1 GOL 407 B 1 HETATM 3 C C2 GOL . . . N 3 24.274 48.303 10.358 0.9 46.3 ? C2 GOL 407 B 1 HETATM 4 O O2 GOL . . . N 3 25.396 47.48 10.48 0.9 53.46 ? O2 GOL 407 B 1 HETATM 5 C C3 GOL . . . N 3 23.071 47.397 10.544 0.9 42.67 ? C3 GOL 407 B 1 HETATM 6 O O3 GOL . . . N 3 23.527 46.122 10.166 0.9 41.67 ? O3 GOL 407 B 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #