data_6ACH # _model_server_result.job_id rR6_tDvFPKeZA3UORzltHA _model_server_result.datetime_utc '2025-02-26 08:11:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ach # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":400}' # _entry.id 6ACH # _exptl.entry_id 6ACH _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ACH _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ACH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 235 n n PA O2A NAD sing 236 n n PA O5B NAD sing 237 n n PA O3 NAD sing 238 n n O2A HOA2 NAD sing 239 n n O5B C5B NAD sing 240 n n C5B C4B NAD sing 241 n n C5B H51A NAD sing 242 n n C5B H52A NAD sing 243 n n C4B O4B NAD sing 244 n n C4B C3B NAD sing 245 n n C4B H4B NAD sing 246 n n O4B C1B NAD sing 247 n n C3B O3B NAD sing 248 n n C3B C2B NAD sing 249 n n C3B H3B NAD sing 250 n n O3B HO3A NAD sing 251 n n C2B O2B NAD sing 252 n n C2B C1B NAD sing 253 n n C2B H2B NAD sing 254 n n O2B HO2A NAD sing 255 n n C1B N9A NAD sing 256 n n C1B H1B NAD sing 257 n n N9A C8A NAD sing 258 n y N9A C4A NAD sing 259 n y C8A N7A NAD doub 260 n y C8A H8A NAD sing 261 n n N7A C5A NAD sing 262 n y C5A C6A NAD sing 263 n y C5A C4A NAD doub 264 n y C6A N6A NAD sing 265 n n C6A N1A NAD doub 266 n y N6A H61A NAD sing 267 n n N6A H62A NAD sing 268 n n N1A C2A NAD sing 269 n y C2A N3A NAD doub 270 n y C2A H2A NAD sing 271 n n N3A C4A NAD sing 272 n y O3 PN NAD sing 273 n n PN O1N NAD doub 274 n n PN O2N NAD sing 275 n n PN O5D NAD sing 276 n n O5D C5D NAD sing 277 n n C5D C4D NAD sing 278 n n C5D H51N NAD sing 279 n n C5D H52N NAD sing 280 n n C4D O4D NAD sing 281 n n C4D C3D NAD sing 282 n n C4D H4D NAD sing 283 n n O4D C1D NAD sing 284 n n C3D O3D NAD sing 285 n n C3D C2D NAD sing 286 n n C3D H3D NAD sing 287 n n O3D HO3N NAD sing 288 n n C2D O2D NAD sing 289 n n C2D C1D NAD sing 290 n n C2D H2D NAD sing 291 n n O2D HO2N NAD sing 292 n n C1D N1N NAD sing 293 n n C1D H1D NAD sing 294 n n N1N C2N NAD sing 295 n y N1N C6N NAD doub 296 n y C2N C3N NAD doub 297 n y C2N H2N NAD sing 298 n n C3N C7N NAD sing 299 n n C3N C4N NAD sing 300 n y C7N O7N NAD doub 301 n n C7N N7N NAD sing 302 n n N7N H71N NAD sing 303 n n N7N H72N NAD sing 304 n n C4N C5N NAD doub 305 n y C4N H4N NAD sing 306 n n C5N C6N NAD sing 307 n y C5N H5N NAD sing 308 n n C6N H6N NAD sing 309 n n # _atom_sites.entry_id 6ACH _atom_sites.fract_transf_matrix[1][1] 0.004228 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004228 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004228 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 NAD A 1 400 400 NAD NAD . J 2 NAD B 1 400 400 NAD NAD . K 2 NAD C 1 400 400 NAD NAD . L 2 NAD D 1 400 400 NAD NAD . M 2 NAD E 1 400 400 NAD NAD . N 2 NAD F 1 400 400 NAD NAD . O 2 NAD G 1 400 400 NAD NAD . P 2 NAD H 1 400 400 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . N 2 144.117 139.541 151.647 1 2.58 ? PA NAD 400 F 1 HETATM 2 O O1A NAD . . . N 2 144.477 140.581 150.617 1 15.41 ? O1A NAD 400 F 1 HETATM 3 O O2A NAD . . . N 2 143.076 140.104 152.585 1 2 ? O2A NAD 400 F 1 HETATM 4 O O5B NAD . . . N 2 145.467 139.136 152.493 1 6.26 ? O5B NAD 400 F 1 HETATM 5 C C5B NAD . . . N 2 146.534 140.031 152.464 1 10.23 ? C5B NAD 400 F 1 HETATM 6 C C4B NAD . . . N 2 146.772 140.578 153.854 1 9.27 ? C4B NAD 400 F 1 HETATM 7 O O4B NAD . . . N 2 148.361 140.651 154.116 1 8.12 ? O4B NAD 400 F 1 HETATM 8 C C3B NAD . . . N 2 146.383 141.811 153.893 1 4.56 ? C3B NAD 400 F 1 HETATM 9 O O3B NAD . . . N 2 144.93 141.893 154.233 1 2 ? O3B NAD 400 F 1 HETATM 10 C C2B NAD . . . N 2 147.227 142.385 155.032 1 4.25 ? C2B NAD 400 F 1 HETATM 11 O O2B NAD . . . N 2 146.696 141.991 156.21 1 8.07 ? O2B NAD 400 F 1 HETATM 12 C C1B NAD . . . N 2 148.589 141.704 154.85 1 8.15 ? C1B NAD 400 F 1 HETATM 13 N N9A NAD . . . N 2 149.525 142.633 154.188 1 11.96 ? N9A NAD 400 F 1 HETATM 14 C C8A NAD . . . N 2 149.5 143.619 153.294 1 15.81 ? C8A NAD 400 F 1 HETATM 15 N N7A NAD . . . N 2 150.759 144.046 153.165 1 13.04 ? N7A NAD 400 F 1 HETATM 16 C C5A NAD . . . N 2 151.539 143.317 153.979 1 7.73 ? C5A NAD 400 F 1 HETATM 17 C C6A NAD . . . N 2 152.89 143.338 154.232 1 13.4 ? C6A NAD 400 F 1 HETATM 18 N N6A NAD . . . N 2 154.04 144.093 153.785 1 19.97 ? N6A NAD 400 F 1 HETATM 19 N N1A NAD . . . N 2 153.419 142.499 155.104 1 9.18 ? N1A NAD 400 F 1 HETATM 20 C C2A NAD . . . N 2 152.633 141.611 155.75 1 3.2 ? C2A NAD 400 F 1 HETATM 21 N N3A NAD . . . N 2 151.308 141.585 155.5 1 2 ? N3A NAD 400 F 1 HETATM 22 C C4A NAD . . . N 2 150.77 142.44 154.62 1 7.57 ? C4A NAD 400 F 1 HETATM 23 O O3 NAD . . . N 2 143.516 138.183 150.945 1 7.95 ? O3 NAD 400 F 1 HETATM 24 P PN NAD . . . N 2 144.031 137.543 149.524 1 7.89 ? PN NAD 400 F 1 HETATM 25 O O1N NAD . . . N 2 144.305 138.625 148.513 1 6.84 ? O1N NAD 400 F 1 HETATM 26 O O2N NAD . . . N 2 142.949 136.639 148.996 1 19.58 ? O2N NAD 400 F 1 HETATM 27 O O5D NAD . . . N 2 145.401 136.671 149.769 1 2 ? O5D NAD 400 F 1 HETATM 28 C C5D NAD . . . N 2 146.629 137.318 149.92 1 2 ? C5D NAD 400 F 1 HETATM 29 C C4D NAD . . . N 2 147.594 136.856 148.844 1 2 ? C4D NAD 400 F 1 HETATM 30 O O4D NAD . . . N 2 147.161 135.394 148.311 1 12.37 ? O4D NAD 400 F 1 HETATM 31 C C3D NAD . . . N 2 147.536 137.673 147.821 1 2 ? C3D NAD 400 F 1 HETATM 32 O O3D NAD . . . N 2 148.911 137.985 147.327 1 2 ? O3D NAD 400 F 1 HETATM 33 C C2D NAD . . . N 2 146.781 136.906 146.729 1 4.3 ? C2D NAD 400 F 1 HETATM 34 O O2D NAD . . . N 2 147.206 137.306 145.508 1 3.45 ? O2D NAD 400 F 1 HETATM 35 C C1D NAD . . . N 2 147.258 135.48 147.017 1 13.13 ? C1D NAD 400 F 1 HETATM 36 N N1N NAD . . . N 2 146.412 134.489 146.332 1 16.75 ? N1N NAD 400 F 1 HETATM 37 C C2N NAD . . . N 2 145.219 134.139 146.849 1 9.83 ? C2N NAD 400 F 1 HETATM 38 C C3N NAD . . . N 2 144.444 133.204 146.188 1 2.03 ? C3N NAD 400 F 1 HETATM 39 C C7N NAD . . . N 2 143.094 132.801 146.764 1 2 ? C7N NAD 400 F 1 HETATM 40 O O7N NAD . . . N 2 142.582 131.798 146.413 1 19.7 ? O7N NAD 400 F 1 HETATM 41 N N7N NAD . . . N 2 142.441 133.651 147.742 1 5.32 ? N7N NAD 400 F 1 HETATM 42 C C4N NAD . . . N 2 144.874 132.661 145.025 1 2 ? C4N NAD 400 F 1 HETATM 43 C C5N NAD . . . N 2 146.071 133.019 144.504 1 8.85 ? C5N NAD 400 F 1 HETATM 44 C C6N NAD . . . N 2 146.842 133.95 145.175 1 10.19 ? C6N NAD 400 F 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #