data_6AD9 # _model_server_result.job_id kkwgP7MvgHjJ3e0LNZczkw _model_server_result.datetime_utc '2024-11-23 12:29:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ad9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6AD9 # _exptl.entry_id 6AD9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 492.568 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[(1E)-1-{8-[(4-methyl-2-propyl-1H-benzimidazol-1-yl)methyl]dibenzo[b,e]oxepin-11(6H)-ylidene}ethyl]-1,2,4-oxadiazol-5(4H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.61 _cell.angle_gamma 90 _cell.entry_id 6AD9 _cell.length_a 43.73 _cell.length_b 54.338 _cell.length_c 66.77 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AD9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C30 H28 N4 O3' _chem_comp.formula_weight 492.568 _chem_comp.id KK4 _chem_comp.mon_nstd_flag . _chem_comp.name 3-[(1E)-1-{8-[(4-methyl-2-propyl-1H-benzimidazol-1-yl)methyl]dibenzo[b,e]oxepin-11(6H)-ylidene}ethyl]-1,2,4-oxadiazol-5(4H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C24 C25 KK4 doub 173 n y C24 C23 KK4 sing 174 n y C25 C26 KK4 sing 175 n y C23 C22 KK4 doub 176 n y C26 C21 KK4 doub 177 n y C22 C21 KK4 sing 178 n y C22 C1 KK4 sing 179 n n C30 C27 KK4 sing 180 n n C11 C10 KK4 doub 181 n y C11 C12 KK4 sing 182 n y C10 C9 KK4 sing 183 n y C21 O1 KK4 sing 184 n n C27 C1 KK4 doub 185 e n C27 C28 KK4 sing 186 n n C1 C2 KK4 sing 187 n n N3 C28 KK4 doub 188 n n N3 O2 KK4 sing 189 n n C19 C2 KK4 doub 190 n y C19 C18 KK4 sing 191 n y C12 C7 KK4 doub 192 n y C9 C13 KK4 sing 193 n n C9 C8 KK4 doub 194 n y C28 N4 KK4 sing 195 n n C2 C3 KK4 sing 196 n y C18 C5 KK4 doub 197 n y O2 C29 KK4 sing 198 n n O1 C20 KK4 sing 199 n n C7 C8 KK4 sing 200 n y C7 N1 KK4 sing 201 n y C8 N2 KK4 sing 202 n y C3 C20 KK4 sing 203 n n C3 C4 KK4 doub 204 n y C5 C4 KK4 sing 205 n y C5 C6 KK4 sing 206 n n N4 C29 KK4 sing 207 n n C29 O3 KK4 doub 208 n n N1 C6 KK4 sing 209 n n N1 C14 KK4 sing 210 n y N2 C14 KK4 doub 211 n y C14 C15 KK4 sing 212 n n C17 C16 KK4 sing 213 n n C15 C16 KK4 sing 214 n n N4 H1 KK4 sing 215 n n C30 H2 KK4 sing 216 n n C30 H3 KK4 sing 217 n n C30 H4 KK4 sing 218 n n C23 H5 KK4 sing 219 n n C24 H6 KK4 sing 220 n n C25 H7 KK4 sing 221 n n C26 H8 KK4 sing 222 n n C20 H9 KK4 sing 223 n n C20 H10 KK4 sing 224 n n C19 H11 KK4 sing 225 n n C18 H12 KK4 sing 226 n n C4 H13 KK4 sing 227 n n C6 H14 KK4 sing 228 n n C6 H15 KK4 sing 229 n n C15 H16 KK4 sing 230 n n C15 H17 KK4 sing 231 n n C16 H18 KK4 sing 232 n n C16 H19 KK4 sing 233 n n C17 H20 KK4 sing 234 n n C17 H21 KK4 sing 235 n n C17 H22 KK4 sing 236 n n C12 H23 KK4 sing 237 n n C11 H24 KK4 sing 238 n n C10 H25 KK4 sing 239 n n C13 H26 KK4 sing 240 n n C13 H27 KK4 sing 241 n n C13 H28 KK4 sing 242 n n # _atom_sites.entry_id 6AD9 _atom_sites.fract_transf_matrix[1][1] 0.022868 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.0077 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018403 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015803 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 KK4 A 1 501 1 KK4 KK4 . D 4 HOH A 1 601 74 HOH HOH . D 4 HOH A 2 602 102 HOH HOH . D 4 HOH A 3 603 26 HOH HOH . D 4 HOH A 4 604 63 HOH HOH . D 4 HOH A 5 605 27 HOH HOH . D 4 HOH A 6 606 130 HOH HOH . D 4 HOH A 7 607 73 HOH HOH . D 4 HOH A 8 608 22 HOH HOH . D 4 HOH A 9 609 49 HOH HOH . D 4 HOH A 10 610 76 HOH HOH . D 4 HOH A 11 611 111 HOH HOH . D 4 HOH A 12 612 20 HOH HOH . D 4 HOH A 13 613 165 HOH HOH . D 4 HOH A 14 614 8 HOH HOH . D 4 HOH A 15 615 58 HOH HOH . D 4 HOH A 16 616 25 HOH HOH . D 4 HOH A 17 617 145 HOH HOH . D 4 HOH A 18 618 51 HOH HOH . D 4 HOH A 19 619 138 HOH HOH . D 4 HOH A 20 620 143 HOH HOH . D 4 HOH A 21 621 179 HOH HOH . D 4 HOH A 22 622 120 HOH HOH . D 4 HOH A 23 623 86 HOH HOH . D 4 HOH A 24 624 67 HOH HOH . D 4 HOH A 25 625 43 HOH HOH . D 4 HOH A 26 626 118 HOH HOH . D 4 HOH A 27 627 10 HOH HOH . D 4 HOH A 28 628 110 HOH HOH . D 4 HOH A 29 629 140 HOH HOH . D 4 HOH A 30 630 40 HOH HOH . D 4 HOH A 31 631 149 HOH HOH . D 4 HOH A 32 632 150 HOH HOH . D 4 HOH A 33 633 54 HOH HOH . D 4 HOH A 34 634 125 HOH HOH . D 4 HOH A 35 635 121 HOH HOH . D 4 HOH A 36 636 39 HOH HOH . D 4 HOH A 37 637 79 HOH HOH . D 4 HOH A 38 638 127 HOH HOH . D 4 HOH A 39 639 166 HOH HOH . D 4 HOH A 40 640 175 HOH HOH . D 4 HOH A 41 641 13 HOH HOH . D 4 HOH A 42 642 46 HOH HOH . D 4 HOH A 43 643 31 HOH HOH . D 4 HOH A 44 644 185 HOH HOH . D 4 HOH A 45 645 9 HOH HOH . D 4 HOH A 46 646 70 HOH HOH . D 4 HOH A 47 647 4 HOH HOH . D 4 HOH A 48 648 5 HOH HOH . D 4 HOH A 49 649 18 HOH HOH . D 4 HOH A 50 650 3 HOH HOH . D 4 HOH A 51 651 33 HOH HOH . D 4 HOH A 52 652 75 HOH HOH . D 4 HOH A 53 653 80 HOH HOH . D 4 HOH A 54 654 6 HOH HOH . D 4 HOH A 55 655 106 HOH HOH . D 4 HOH A 56 656 133 HOH HOH . D 4 HOH A 57 657 174 HOH HOH . D 4 HOH A 58 658 134 HOH HOH . D 4 HOH A 59 659 28 HOH HOH . D 4 HOH A 60 660 21 HOH HOH . D 4 HOH A 61 661 167 HOH HOH . D 4 HOH A 62 662 77 HOH HOH . D 4 HOH A 63 663 60 HOH HOH . D 4 HOH A 64 664 56 HOH HOH . D 4 HOH A 65 665 38 HOH HOH . D 4 HOH A 66 666 156 HOH HOH . D 4 HOH A 67 667 158 HOH HOH . D 4 HOH A 68 668 132 HOH HOH . D 4 HOH A 69 669 68 HOH HOH . D 4 HOH A 70 670 128 HOH HOH . D 4 HOH A 71 671 160 HOH HOH . D 4 HOH A 72 672 122 HOH HOH . D 4 HOH A 73 673 14 HOH HOH . D 4 HOH A 74 674 90 HOH HOH . D 4 HOH A 75 675 85 HOH HOH . D 4 HOH A 76 676 164 HOH HOH . D 4 HOH A 77 677 66 HOH HOH . D 4 HOH A 78 678 15 HOH HOH . D 4 HOH A 79 679 72 HOH HOH . D 4 HOH A 80 680 42 HOH HOH . D 4 HOH A 81 681 47 HOH HOH . D 4 HOH A 82 682 176 HOH HOH . D 4 HOH A 83 683 157 HOH HOH . D 4 HOH A 84 684 83 HOH HOH . D 4 HOH A 85 685 62 HOH HOH . D 4 HOH A 86 686 129 HOH HOH . D 4 HOH A 87 687 186 HOH HOH . D 4 HOH A 88 688 71 HOH HOH . D 4 HOH A 89 689 12 HOH HOH . D 4 HOH A 90 690 136 HOH HOH . D 4 HOH A 91 691 11 HOH HOH . D 4 HOH A 92 692 161 HOH HOH . D 4 HOH A 93 693 88 HOH HOH . D 4 HOH A 94 694 168 HOH HOH . D 4 HOH A 95 695 61 HOH HOH . D 4 HOH A 96 696 151 HOH HOH . D 4 HOH A 97 697 84 HOH HOH . D 4 HOH A 98 698 78 HOH HOH . D 4 HOH A 99 699 112 HOH HOH . D 4 HOH A 100 700 24 HOH HOH . D 4 HOH A 101 701 65 HOH HOH . D 4 HOH A 102 702 81 HOH HOH . D 4 HOH A 103 703 119 HOH HOH . D 4 HOH A 104 704 104 HOH HOH . D 4 HOH A 105 705 23 HOH HOH . D 4 HOH A 106 706 32 HOH HOH . D 4 HOH A 107 707 52 HOH HOH . D 4 HOH A 108 708 94 HOH HOH . D 4 HOH A 109 709 64 HOH HOH . D 4 HOH A 110 710 59 HOH HOH . D 4 HOH A 111 711 45 HOH HOH . D 4 HOH A 112 712 115 HOH HOH . D 4 HOH A 113 713 30 HOH HOH . D 4 HOH A 114 714 29 HOH HOH . D 4 HOH A 115 715 41 HOH HOH . D 4 HOH A 116 716 44 HOH HOH . D 4 HOH A 117 717 172 HOH HOH . D 4 HOH A 118 718 19 HOH HOH . D 4 HOH A 119 719 55 HOH HOH . D 4 HOH A 120 720 152 HOH HOH . D 4 HOH A 121 721 184 HOH HOH . D 4 HOH A 122 722 171 HOH HOH . D 4 HOH A 123 723 7 HOH HOH . D 4 HOH A 124 724 37 HOH HOH . D 4 HOH A 125 725 92 HOH HOH . D 4 HOH A 126 726 148 HOH HOH . D 4 HOH A 127 727 181 HOH HOH . D 4 HOH A 128 728 180 HOH HOH . D 4 HOH A 129 729 95 HOH HOH . D 4 HOH A 130 730 16 HOH HOH . D 4 HOH A 131 731 17 HOH HOH . D 4 HOH A 132 732 2 HOH HOH . D 4 HOH A 133 733 144 HOH HOH . D 4 HOH A 134 734 178 HOH HOH . D 4 HOH A 135 735 170 HOH HOH . D 4 HOH A 136 736 155 HOH HOH . D 4 HOH A 137 737 114 HOH HOH . D 4 HOH A 138 738 177 HOH HOH . D 4 HOH A 139 739 91 HOH HOH . D 4 HOH A 140 740 113 HOH HOH . D 4 HOH A 141 741 1 HOH HOH . D 4 HOH A 142 742 173 HOH HOH . D 4 HOH A 143 743 117 HOH HOH . D 4 HOH A 144 744 100 HOH HOH . D 4 HOH A 145 745 162 HOH HOH . D 4 HOH A 146 746 82 HOH HOH . D 4 HOH A 147 747 146 HOH HOH . D 4 HOH A 148 748 107 HOH HOH . D 4 HOH A 149 749 48 HOH HOH . D 4 HOH A 150 750 89 HOH HOH . D 4 HOH A 151 751 141 HOH HOH . D 4 HOH A 152 752 109 HOH HOH . D 4 HOH A 153 753 93 HOH HOH . D 4 HOH A 154 754 69 HOH HOH . D 4 HOH A 155 755 99 HOH HOH . D 4 HOH A 156 756 98 HOH HOH . D 4 HOH A 157 757 36 HOH HOH . D 4 HOH A 158 758 169 HOH HOH . D 4 HOH A 159 759 57 HOH HOH . D 4 HOH A 160 760 154 HOH HOH . D 4 HOH A 161 761 105 HOH HOH . D 4 HOH A 162 762 35 HOH HOH . D 4 HOH A 163 763 182 HOH HOH . D 4 HOH A 164 764 137 HOH HOH . D 4 HOH A 165 765 101 HOH HOH . D 4 HOH A 166 766 123 HOH HOH . D 4 HOH A 167 767 135 HOH HOH . D 4 HOH A 168 768 103 HOH HOH . D 4 HOH A 169 769 147 HOH HOH . D 4 HOH A 170 770 126 HOH HOH . D 4 HOH A 171 771 139 HOH HOH . D 4 HOH A 172 772 159 HOH HOH . D 4 HOH A 173 773 34 HOH HOH . D 4 HOH A 174 774 153 HOH HOH . D 4 HOH A 175 775 97 HOH HOH . D 4 HOH A 176 776 108 HOH HOH . D 4 HOH A 177 777 53 HOH HOH . D 4 HOH A 178 778 142 HOH HOH . D 4 HOH A 179 779 124 HOH HOH . D 4 HOH A 180 780 87 HOH HOH . D 4 HOH A 181 781 183 HOH HOH . D 4 HOH A 182 782 96 HOH HOH . E 4 HOH B 1 701 50 HOH HOH . E 4 HOH B 2 702 116 HOH HOH . E 4 HOH B 3 703 163 HOH HOH . E 4 HOH B 4 704 187 HOH HOH . E 4 HOH B 5 705 131 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 KK4 . . . C 3 -15.513 4.965 11.939 1 41.47 ? O3 KK4 501 A 1 HETATM 2 C C29 KK4 . . . C 3 -14.965 4.804 10.854 1 43.63 ? C29 KK4 501 A 1 HETATM 3 O O2 KK4 . . . C 3 -15.527 4.22 9.741 1 45.66 ? O2 KK4 501 A 1 HETATM 4 N N3 KK4 . . . C 3 -14.507 4.293 8.691 1 38.26 ? N3 KK4 501 A 1 HETATM 5 N N4 KK4 . . . C 3 -13.706 5.197 10.523 1 43.01 ? N4 KK4 501 A 1 HETATM 6 C C28 KK4 . . . C 3 -13.504 4.885 9.245 1 35.74 ? C28 KK4 501 A 1 HETATM 7 C C27 KK4 . . . C 3 -12.221 5.129 8.57 1 30.2 ? C27 KK4 501 A 1 HETATM 8 C C30 KK4 . . . C 3 -12.115 6.484 7.922 1 29.92 ? C30 KK4 501 A 1 HETATM 9 C C1 KK4 . . . C 3 -11.303 4.133 8.579 1 26.31 ? C1 KK4 501 A 1 HETATM 10 C C22 KK4 . . . C 3 -10.013 4.231 7.883 1 25.48 ? C22 KK4 501 A 1 HETATM 11 C C23 KK4 . . . C 3 -10.05 4.552 6.513 1 26.07 ? C23 KK4 501 A 1 HETATM 12 C C24 KK4 . . . C 3 -8.879 4.619 5.769 1 25.23 ? C24 KK4 501 A 1 HETATM 13 C C25 KK4 . . . C 3 -7.678 4.305 6.374 1 25.29 ? C25 KK4 501 A 1 HETATM 14 C C26 KK4 . . . C 3 -7.618 3.945 7.73 1 25.8 ? C26 KK4 501 A 1 HETATM 15 C C21 KK4 . . . C 3 -8.791 3.898 8.496 1 25.7 ? C21 KK4 501 A 1 HETATM 16 O O1 KK4 . . . C 3 -8.549 3.564 9.793 1 24.18 ? O1 KK4 501 A 1 HETATM 17 C C20 KK4 . . . C 3 -9.573 3.43 10.772 1 24.41 ? C20 KK4 501 A 1 HETATM 18 C C3 KK4 . . . C 3 -10.636 2.459 10.322 1 23.35 ? C3 KK4 501 A 1 HETATM 19 C C2 KK4 . . . C 3 -11.487 2.807 9.249 1 23.02 ? C2 KK4 501 A 1 HETATM 20 C C19 KK4 . . . C 3 -12.432 1.88 8.844 1 22.27 ? C19 KK4 501 A 1 HETATM 21 C C18 KK4 . . . C 3 -12.592 0.651 9.48 1 21.46 ? C18 KK4 501 A 1 HETATM 22 C C5 KK4 . . . C 3 -11.767 0.292 10.519 1 22.21 ? C5 KK4 501 A 1 HETATM 23 C C4 KK4 . . . C 3 -10.773 1.202 10.929 1 22.87 ? C4 KK4 501 A 1 HETATM 24 C C6 KK4 . . . C 3 -11.889 -1.032 11.225 1 24.71 ? C6 KK4 501 A 1 HETATM 25 N N1 KK4 . . . C 3 -13.094 -1.789 10.92 1 24.02 ? N1 KK4 501 A 1 HETATM 26 C C14 KK4 . . . C 3 -14.301 -1.787 11.58 1 24.71 ? C14 KK4 501 A 1 HETATM 27 C C15 KK4 . . . C 3 -14.707 -1.036 12.799 1 26.69 ? C15 KK4 501 A 1 HETATM 28 C C16 KK4 . . . C 3 -14.534 0.469 12.824 1 29.12 ? C16 KK4 501 A 1 HETATM 29 C C17 KK4 . . . C 3 -15.413 1.136 11.805 1 31.97 ? C17 KK4 501 A 1 HETATM 30 N N2 KK4 . . . C 3 -15.126 -2.588 10.996 1 24.69 ? N2 KK4 501 A 1 HETATM 31 C C8 KK4 . . . C 3 -14.443 -3.138 9.965 1 24.81 ? C8 KK4 501 A 1 HETATM 32 C C7 KK4 . . . C 3 -13.17 -2.661 9.887 1 24.69 ? C7 KK4 501 A 1 HETATM 33 C C12 KK4 . . . C 3 -12.272 -3.065 8.888 1 26.73 ? C12 KK4 501 A 1 HETATM 34 C C11 KK4 . . . C 3 -12.738 -3.998 7.942 1 26.21 ? C11 KK4 501 A 1 HETATM 35 C C10 KK4 . . . C 3 -14.042 -4.495 8.011 1 26.91 ? C10 KK4 501 A 1 HETATM 36 C C9 KK4 . . . C 3 -14.918 -4.079 9.045 1 27.49 ? C9 KK4 501 A 1 HETATM 37 C C13 KK4 . . . C 3 -16.328 -4.58 9.153 1 27.93 ? C13 KK4 501 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 37 #