data_6ADE # _model_server_result.job_id aFmOTnGVisb9BR3R9KKzXQ _model_server_result.datetime_utc '2024-10-18 16:30:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ade # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 6ADE # _exptl.entry_id 6ADE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ADE _cell.length_a 90.78 _cell.length_b 131.68 _cell.length_c 220.64 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ADE _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E 1 1,2 B,F 2 1 C,G 2 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 220.64 3 'crystal symmetry operation' 7_455 -x-1/2,y+1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 -45.39 65.84 110.32 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 50 A ASP 50 1_555 A N SEP 51 A SEP 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale2 A C SEP 51 A SEP 51 1_555 A N THR 52 A THR 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale3 A C ALA 150 A ALA 150 1_555 A N SEP 151 A SEP 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale4 A C SEP 151 A SEP 151 1_555 A N CYS 152 A CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale5 B C ASP 50 B ASP 50 1_555 B N SEP 51 B SEP 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale6 B C SEP 51 B SEP 51 1_555 B N THR 52 B THR 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale7 B C ALA 150 B ALA 150 1_555 B N SEP 151 B SEP 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale8 B C SEP 151 B SEP 151 1_555 B N CYS 152 B CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale9 C C ASP 50 C ASP 50 1_555 C N SEP 51 C SEP 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale10 C C SEP 51 C SEP 51 1_555 C N THR 52 C THR 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale11 C C ALA 150 C ALA 150 1_555 C N SEP 151 C SEP 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? covale ? covale12 C C SEP 151 C SEP 151 1_555 C N CYS 152 C CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 6ADE _atom_sites.fract_transf_matrix[1][1] 0.011016 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007594 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004532 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NAD A 1 401 1 NAD NAD . E 3 HOH A 1 501 74 HOH HOH . E 3 HOH A 2 502 53 HOH HOH . E 3 HOH A 3 503 59 HOH HOH . E 3 HOH A 4 504 76 HOH HOH . E 3 HOH A 5 505 30 HOH HOH . E 3 HOH A 6 506 72 HOH HOH . E 3 HOH A 7 507 81 HOH HOH . E 3 HOH A 8 508 75 HOH HOH . E 3 HOH A 9 509 43 HOH HOH . E 3 HOH A 10 510 44 HOH HOH . E 3 HOH A 11 511 42 HOH HOH . E 3 HOH A 12 512 8 HOH HOH . E 3 HOH A 13 513 36 HOH HOH . E 3 HOH A 14 514 60 HOH HOH . E 3 HOH A 15 515 71 HOH HOH . E 3 HOH A 16 516 34 HOH HOH . E 3 HOH A 17 517 45 HOH HOH . E 3 HOH A 18 518 61 HOH HOH . E 3 HOH A 19 519 5 HOH HOH . E 3 HOH A 20 520 4 HOH HOH . E 3 HOH A 21 521 54 HOH HOH . F 3 HOH B 1 401 69 HOH HOH . F 3 HOH B 2 402 70 HOH HOH . F 3 HOH B 3 403 20 HOH HOH . F 3 HOH B 4 404 80 HOH HOH . F 3 HOH B 5 405 67 HOH HOH . F 3 HOH B 6 406 78 HOH HOH . F 3 HOH B 7 407 77 HOH HOH . F 3 HOH B 8 408 79 HOH HOH . F 3 HOH B 9 409 10 HOH HOH . F 3 HOH B 10 410 55 HOH HOH . F 3 HOH B 11 411 25 HOH HOH . F 3 HOH B 12 412 57 HOH HOH . F 3 HOH B 13 413 31 HOH HOH . F 3 HOH B 14 414 9 HOH HOH . F 3 HOH B 15 415 73 HOH HOH . F 3 HOH B 16 416 58 HOH HOH . F 3 HOH B 17 417 35 HOH HOH . G 3 HOH C 1 401 64 HOH HOH . G 3 HOH C 2 402 62 HOH HOH . G 3 HOH C 3 403 22 HOH HOH . G 3 HOH C 4 404 50 HOH HOH . G 3 HOH C 5 405 6 HOH HOH . G 3 HOH C 6 406 51 HOH HOH . G 3 HOH C 7 407 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . D 2 -3.83 18.479 101.352 0.8 84.79 ? PA NAD 401 A 1 HETATM 2 O O1A NAD . . . D 2 -3.344 18.927 102.701 0.8 83.02 ? O1A NAD 401 A 1 HETATM 3 O O2A NAD . . . D 2 -2.788 17.662 100.62 0.8 84 ? O2A NAD 401 A 1 HETATM 4 O O5B NAD . . . D 2 -4.36 19.789 100.534 0.8 80.84 ? O5B NAD 401 A 1 HETATM 5 C C5B NAD . . . D 2 -4.132 21.165 100.861 0.8 76.98 ? C5B NAD 401 A 1 HETATM 6 C C4B NAD . . . D 2 -3.225 21.792 99.803 0.8 76.94 ? C4B NAD 401 A 1 HETATM 7 O O4B NAD . . . D 2 -3.621 23.126 99.488 0.8 70.66 ? O4B NAD 401 A 1 HETATM 8 C C3B NAD . . . D 2 -1.794 21.869 100.315 0.8 78.34 ? C3B NAD 401 A 1 HETATM 9 O O3B NAD . . . D 2 -0.842 21.627 99.271 0.8 78.57 ? O3B NAD 401 A 1 HETATM 10 C C2B NAD . . . D 2 -1.668 23.286 100.796 0.8 76.94 ? C2B NAD 401 A 1 HETATM 11 O O2B NAD . . . D 2 -0.281 23.632 100.768 0.8 79.15 ? O2B NAD 401 A 1 HETATM 12 C C1B NAD . . . D 2 -2.569 24.036 99.811 0.8 73.57 ? C1B NAD 401 A 1 HETATM 13 N N9A NAD . . . D 2 -3.16 25.306 100.298 0.8 77.29 ? N9A NAD 401 A 1 HETATM 14 C C8A NAD . . . D 2 -3.569 25.558 101.558 0.8 83.76 ? C8A NAD 401 A 1 HETATM 15 N N7A NAD . . . D 2 -4.088 26.819 101.666 0.8 88.62 ? N7A NAD 401 A 1 HETATM 16 C C5A NAD . . . D 2 -4.019 27.406 100.453 0.8 88.89 ? C5A NAD 401 A 1 HETATM 17 C C6A NAD . . . D 2 -4.399 28.731 99.874 0.8 84.86 ? C6A NAD 401 A 1 HETATM 18 N N6A NAD . . . D 2 -4.951 29.675 100.662 0.8 85.1 ? N6A NAD 401 A 1 HETATM 19 N N1A NAD . . . D 2 -4.186 28.965 98.553 0.8 81.03 ? N1A NAD 401 A 1 HETATM 20 C C2A NAD . . . D 2 -3.636 28.002 97.776 0.8 80.77 ? C2A NAD 401 A 1 HETATM 21 N N3A NAD . . . D 2 -3.256 26.777 98.236 0.8 81.36 ? N3A NAD 401 A 1 HETATM 22 C C4A NAD . . . D 2 -3.412 26.404 99.547 0.8 86 ? C4A NAD 401 A 1 HETATM 23 O O3 NAD . . . D 2 -5.245 17.654 101.378 0.8 88.16 ? O3 NAD 401 A 1 HETATM 24 P PN NAD . . . D 2 -6.386 17.523 100.19 0.8 100.98 ? PN NAD 401 A 1 HETATM 25 O O1N NAD . . . D 2 -5.881 18.128 98.887 0.8 101.67 ? O1N NAD 401 A 1 HETATM 26 O O2N NAD . . . D 2 -6.83 16.065 100.192 0.8 84.35 ? O2N NAD 401 A 1 HETATM 27 O O5D NAD . . . D 2 -7.735 18.36 100.666 0.8 117.73 ? O5D NAD 401 A 1 HETATM 28 C C5D NAD . . . D 2 -8.705 19.012 99.789 0.8 119.77 ? C5D NAD 401 A 1 HETATM 29 C C4D NAD . . . D 2 -10.233 19.007 100.136 0.8 117.21 ? C4D NAD 401 A 1 HETATM 30 O O4D NAD . . . D 2 -10.971 18.026 99.385 0.8 126.08 ? O4D NAD 401 A 1 HETATM 31 C C3D NAD . . . D 2 -10.686 18.764 101.585 0.8 116.32 ? C3D NAD 401 A 1 HETATM 32 O O3D NAD . . . D 2 -11.424 19.892 102.049 0.8 117.97 ? O3D NAD 401 A 1 HETATM 33 C C2D NAD . . . D 2 -11.647 17.579 101.622 0.8 113.61 ? C2D NAD 401 A 1 HETATM 34 O O2D NAD . . . D 2 -12.858 17.856 102.33 0.8 103.14 ? O2D NAD 401 A 1 HETATM 35 C C1D NAD . . . D 2 -11.995 17.335 100.164 0.8 118.92 ? C1D NAD 401 A 1 HETATM 36 N N1N NAD . . . D 2 -12.076 15.899 99.817 0.8 109.46 ? N1N NAD 401 A 1 HETATM 37 C C2N NAD . . . D 2 -11.034 15.113 100.148 0.8 105.37 ? C2N NAD 401 A 1 HETATM 38 C C3N NAD . . . D 2 -10.996 13.765 99.845 0.8 93.49 ? C3N NAD 401 A 1 HETATM 39 C C7N NAD . . . D 2 -9.779 12.998 100.288 0.8 92.2 ? C7N NAD 401 A 1 HETATM 40 O O7N NAD . . . D 2 -9.015 13.539 101.097 0.8 87.23 ? O7N NAD 401 A 1 HETATM 41 N N7N NAD . . . D 2 -9.554 11.773 99.802 0.8 88.05 ? N7N NAD 401 A 1 HETATM 42 C C4N NAD . . . D 2 -12.069 13.23 99.157 0.8 81.24 ? C4N NAD 401 A 1 HETATM 43 C C5N NAD . . . D 2 -13.135 14.06 98.814 0.8 81.93 ? C5N NAD 401 A 1 HETATM 44 C C6N NAD . . . D 2 -13.13 15.399 99.155 0.8 89.74 ? C6N NAD 401 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #