data_6ADG # _model_server_result.job_id zMyWq5T20tzzFLNNDpfZag _model_server_result.datetime_utc '2024-12-15 07:26:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6adg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":504}' # _entry.id 6ADG # _exptl.entry_id 6ADG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.737 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-(6-chloropyridin-2-yl)-N2,N4-bis[(2R)-1,1,1-trifluoropropan-2-yl]-1,3,5-triazine-2,4-diamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ADG _cell.length_a 87.965 _cell.length_b 197.253 _cell.length_c 85.828 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ADG _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,G,H,J,K 1 1 C,I,L 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_365 -x-2,-y+1,z -1 0 0 0 -1 0 0 0 1 -175.93 197.253 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LYS 321 A LYS 321 1_555 F MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? metalc ? metalc2 E MG MG . A MG 502 4_455 B O LYS 321 B LYS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? # _chem_comp.formula 'C14 H13 Cl F6 N6' _chem_comp.formula_weight 414.737 _chem_comp.id 9UO _chem_comp.mon_nstd_flag . _chem_comp.name 6-(6-chloropyridin-2-yl)-N2,N4-bis[(2R)-1,1,1-trifluoropropan-2-yl]-1,3,5-triazine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 C21 9UO sing 1 n n F26 C23 9UO sing 2 n n F25 C23 9UO sing 3 n n C23 C21 9UO sing 4 n n C23 F24 9UO sing 5 n n C21 N20 9UO sing 6 n n N20 C19 9UO sing 7 n n C13 C12 9UO doub 8 n y C13 C14 9UO sing 9 n y C12 C11 9UO sing 10 n y N18 C19 9UO doub 11 n y N18 C10 9UO sing 12 n y C19 N27 9UO sing 13 n y C14 C15 9UO doub 14 n y C11 C10 9UO sing 15 n n C11 N17 9UO doub 16 n y C10 N09 9UO doub 17 n y N27 C08 9UO doub 18 n y C15 N17 9UO sing 19 n y C15 CL1 9UO sing 20 n n N09 C08 9UO sing 21 n y C08 N07 9UO sing 22 n n F04 C03 9UO sing 23 n n N07 C02 9UO sing 24 n n C02 C03 9UO sing 25 n n C02 C01 9UO sing 26 n n C03 F05 9UO sing 27 n n C03 F06 9UO sing 28 n n C13 H1 9UO sing 29 n n C21 H2 9UO sing 30 n n C22 H3 9UO sing 31 n n C22 H4 9UO sing 32 n n C22 H5 9UO sing 33 n n C01 H6 9UO sing 34 n n C01 H7 9UO sing 35 n n C01 H8 9UO sing 36 n n C02 H9 9UO sing 37 n n C12 H10 9UO sing 38 n n C14 H11 9UO sing 39 n n N07 H12 9UO sing 40 n n N20 H13 9UO sing 41 n n # _atom_sites.entry_id 6ADG _atom_sites.fract_transf_matrix[1][1] 0.011368 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00507 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011651 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NDP A 1 501 501 NDP NDP . E 3 MG A 1 502 1 MG MG . F 3 MG A 1 503 1 MG MG . G 4 9UO A 1 504 1 9UO LIG . H 2 NDP B 1 501 501 NDP NDP . I 4 9UO C 1 501 1 9UO LIG . J 5 HOH A 1 601 21 HOH HOH . J 5 HOH A 2 602 9 HOH HOH . J 5 HOH A 3 603 6 HOH HOH . J 5 HOH A 4 604 28 HOH HOH . J 5 HOH A 5 605 58 HOH HOH . J 5 HOH A 6 606 36 HOH HOH . J 5 HOH A 7 607 52 HOH HOH . J 5 HOH A 8 608 1 HOH HOH . J 5 HOH A 9 609 43 HOH HOH . J 5 HOH A 10 610 44 HOH HOH . J 5 HOH A 11 611 13 HOH HOH . J 5 HOH A 12 612 40 HOH HOH . J 5 HOH A 13 613 12 HOH HOH . J 5 HOH A 14 614 11 HOH HOH . J 5 HOH A 15 615 37 HOH HOH . J 5 HOH A 16 616 27 HOH HOH . J 5 HOH A 17 617 30 HOH HOH . J 5 HOH A 18 618 57 HOH HOH . J 5 HOH A 19 619 7 HOH HOH . J 5 HOH A 20 620 50 HOH HOH . J 5 HOH A 21 621 48 HOH HOH . J 5 HOH A 22 622 35 HOH HOH . J 5 HOH A 23 623 53 HOH HOH . J 5 HOH A 24 624 56 HOH HOH . J 5 HOH A 25 625 47 HOH HOH . J 5 HOH A 26 626 25 HOH HOH . J 5 HOH A 27 627 24 HOH HOH . J 5 HOH A 28 628 45 HOH HOH . J 5 HOH A 29 629 26 HOH HOH . J 5 HOH A 30 630 55 HOH HOH . J 5 HOH A 31 631 39 HOH HOH . J 5 HOH A 32 632 22 HOH HOH . J 5 HOH A 33 633 29 HOH HOH . J 5 HOH A 34 634 42 HOH HOH . J 5 HOH A 35 635 10 HOH HOH . J 5 HOH A 36 636 2 HOH HOH . J 5 HOH A 37 637 14 HOH HOH . J 5 HOH A 38 638 16 HOH HOH . J 5 HOH A 39 639 5 HOH HOH . J 5 HOH A 40 640 23 HOH HOH . J 5 HOH A 41 641 51 HOH HOH . J 5 HOH A 42 642 8 HOH HOH . J 5 HOH A 43 643 17 HOH HOH . J 5 HOH A 44 644 15 HOH HOH . J 5 HOH A 45 645 49 HOH HOH . J 5 HOH A 46 646 59 HOH HOH . J 5 HOH A 47 647 46 HOH HOH . J 5 HOH A 48 648 41 HOH HOH . J 5 HOH A 49 649 19 HOH HOH . J 5 HOH A 50 650 34 HOH HOH . J 5 HOH A 51 651 3 HOH HOH . J 5 HOH A 52 652 4 HOH HOH . J 5 HOH A 53 653 33 HOH HOH . J 5 HOH A 54 654 54 HOH HOH . J 5 HOH A 55 655 18 HOH HOH . K 5 HOH B 1 601 31 HOH HOH . K 5 HOH B 2 602 123 HOH HOH . K 5 HOH B 3 603 65 HOH HOH . K 5 HOH B 4 604 80 HOH HOH . K 5 HOH B 5 605 83 HOH HOH . K 5 HOH B 6 606 74 HOH HOH . K 5 HOH B 7 607 20 HOH HOH . K 5 HOH B 8 608 121 HOH HOH . K 5 HOH B 9 609 84 HOH HOH . K 5 HOH B 10 610 68 HOH HOH . K 5 HOH B 11 611 69 HOH HOH . K 5 HOH B 12 612 124 HOH HOH . K 5 HOH B 13 613 70 HOH HOH . K 5 HOH B 14 614 38 HOH HOH . K 5 HOH B 15 615 87 HOH HOH . K 5 HOH B 16 616 32 HOH HOH . K 5 HOH B 17 617 60 HOH HOH . K 5 HOH B 18 618 82 HOH HOH . K 5 HOH B 19 619 75 HOH HOH . K 5 HOH B 20 620 78 HOH HOH . K 5 HOH B 21 621 67 HOH HOH . K 5 HOH B 22 622 85 HOH HOH . K 5 HOH B 23 623 81 HOH HOH . K 5 HOH B 24 624 77 HOH HOH . K 5 HOH B 25 625 64 HOH HOH . K 5 HOH B 26 626 63 HOH HOH . K 5 HOH B 27 627 61 HOH HOH . K 5 HOH B 28 628 72 HOH HOH . K 5 HOH B 29 629 73 HOH HOH . K 5 HOH B 30 630 66 HOH HOH . K 5 HOH B 31 631 79 HOH HOH . K 5 HOH B 32 632 71 HOH HOH . K 5 HOH B 33 633 62 HOH HOH . K 5 HOH B 34 634 122 HOH HOH . L 5 HOH C 1 601 97 HOH HOH . L 5 HOH C 2 602 103 HOH HOH . L 5 HOH C 3 603 95 HOH HOH . L 5 HOH C 4 604 107 HOH HOH . L 5 HOH C 5 605 110 HOH HOH . L 5 HOH C 6 606 91 HOH HOH . L 5 HOH C 7 607 96 HOH HOH . L 5 HOH C 8 608 106 HOH HOH . L 5 HOH C 9 609 104 HOH HOH . L 5 HOH C 10 610 109 HOH HOH . L 5 HOH C 11 611 90 HOH HOH . L 5 HOH C 12 612 115 HOH HOH . L 5 HOH C 13 613 102 HOH HOH . L 5 HOH C 14 614 117 HOH HOH . L 5 HOH C 15 615 101 HOH HOH . L 5 HOH C 16 616 92 HOH HOH . L 5 HOH C 17 617 94 HOH HOH . L 5 HOH C 18 618 116 HOH HOH . L 5 HOH C 19 619 111 HOH HOH . L 5 HOH C 20 620 93 HOH HOH . L 5 HOH C 21 621 118 HOH HOH . L 5 HOH C 22 622 86 HOH HOH . L 5 HOH C 23 623 113 HOH HOH . L 5 HOH C 24 624 76 HOH HOH . L 5 HOH C 25 625 112 HOH HOH . L 5 HOH C 26 626 120 HOH HOH . L 5 HOH C 27 627 119 HOH HOH . L 5 HOH C 28 628 99 HOH HOH . L 5 HOH C 29 629 105 HOH HOH . L 5 HOH C 30 630 100 HOH HOH . L 5 HOH C 31 631 114 HOH HOH . L 5 HOH C 32 632 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 9UO . A . G 4 -59.749 38.394 -21.598 0.65 41.46 ? C10 9UO 504 A 1 HETATM 2 C C10 9UO . B . G 4 -59.377 38.377 -21.113 0.35 40.65 ? C10 9UO 504 A 1 HETATM 3 C C13 9UO . A . G 4 -60.143 34.908 -23.038 0.65 36.14 ? C13 9UO 504 A 1 HETATM 4 C C13 9UO . B . G 4 -58.5 34.958 -19.708 0.35 35.03 ? C13 9UO 504 A 1 HETATM 5 C C15 9UO . A . G 4 -59.109 34.833 -20.897 0.65 36.64 ? C15 9UO 504 A 1 HETATM 6 C C15 9UO . B . G 4 -59.545 34.763 -21.836 0.35 36.42 ? C15 9UO 504 A 1 HETATM 7 C C21 9UO . A . G 4 -61.57 42.548 -23.171 0.65 43.98 ? C21 9UO 504 A 1 HETATM 8 C C21 9UO . B . G 4 -61.468 42.248 -23.043 0.35 41.7 ? C21 9UO 504 A 1 HETATM 9 C C22 9UO . A . G 4 -62.987 43.063 -22.953 0.65 41.47 ? C22 9UO 504 A 1 HETATM 10 C C22 9UO . B . G 4 -62.938 42.54 -22.765 0.35 41.51 ? C22 9UO 504 A 1 HETATM 11 C C01 9UO . A . G 4 -56.478 42.683 -19.894 0.65 41.66 ? C01 9UO 504 A 1 HETATM 12 C C01 9UO . B . G 4 -56.487 43.213 -19.913 0.35 41.89 ? C01 9UO 504 A 1 HETATM 13 C C02 9UO . A . G 4 -57.981 42.452 -19.797 0.65 40.51 ? C02 9UO 504 A 1 HETATM 14 C C02 9UO . B . G 4 -57.925 42.737 -19.749 0.35 41.52 ? C02 9UO 504 A 1 HETATM 15 C C03 9UO . A . G 4 -58.52 43.195 -18.58 0.65 43.69 ? C03 9UO 504 A 1 HETATM 16 C C03 9UO . B . G 4 -58.524 43.375 -18.504 0.35 43.5 ? C03 9UO 504 A 1 HETATM 17 C C08 9UO . A . G 4 -59.07 40.338 -20.616 0.65 41.28 ? C08 9UO 504 A 1 HETATM 18 C C08 9UO . B . G 4 -58.749 40.464 -20.439 0.35 40.63 ? C08 9UO 504 A 1 HETATM 19 C C11 9UO . A . G 4 -59.687 36.878 -21.745 0.65 41.02 ? C11 9UO 504 A 1 HETATM 20 C C11 9UO . B . G 4 -59.234 36.863 -20.98 0.35 39.52 ? C11 9UO 504 A 1 HETATM 21 C C12 9UO . A . G 4 -60.189 36.285 -22.891 0.65 37.8 ? C12 9UO 504 A 1 HETATM 22 C C12 9UO . B . G 4 -58.641 36.331 -19.847 0.35 37.01 ? C12 9UO 504 A 1 HETATM 23 C C14 9UO . A . G 4 -59.587 34.165 -22.011 0.65 34.71 ? C14 9UO 504 A 1 HETATM 24 C C14 9UO . B . G 4 -58.966 34.157 -20.735 0.35 35.35 ? C14 9UO 504 A 1 HETATM 25 C C19 9UO . A . G 4 -60.653 40.384 -22.259 0.65 41.66 ? C19 9UO 504 A 1 HETATM 26 C C19 9UO . B . G 4 -60.323 40.224 -22.075 0.35 41.73 ? C19 9UO 504 A 1 HETATM 27 C C23 9UO . A . G 4 -61.095 42.978 -24.553 0.65 47 ? C23 9UO 504 A 1 HETATM 28 C C23 9UO . B . G 4 -61.104 42.816 -24.412 0.35 47.02 ? C23 9UO 504 A 1 HETATM 29 F F04 9UO . A . G 4 -59.712 43.771 -18.896 0.65 46.96 ? F04 9UO 504 A 1 HETATM 30 F F04 9UO . B . G 4 -59.721 43.938 -18.821 0.35 46.87 ? F04 9UO 504 A 1 HETATM 31 F F05 9UO . A . G 4 -57.639 44.161 -18.208 0.65 43.16 ? F05 9UO 504 A 1 HETATM 32 F F05 9UO . B . G 4 -57.68 44.331 -18.03 0.35 42.83 ? F05 9UO 504 A 1 HETATM 33 F F06 9UO . A . G 4 -58.688 42.328 -17.548 0.65 40.94 ? F06 9UO 504 A 1 HETATM 34 F F06 9UO . B . G 4 -58.7 42.423 -17.55 0.35 44.26 ? F06 9UO 504 A 1 HETATM 35 F F24 9UO . A . G 4 -59.75 43.177 -24.521 0.65 68.44 ? F24 9UO 504 A 1 HETATM 36 F F24 9UO . B . G 4 -59.774 43.097 -24.444 0.35 60.99 ? F24 9UO 504 A 1 HETATM 37 F F25 9UO . A . G 4 -61.721 44.132 -24.909 0.65 44.41 ? F25 9UO 504 A 1 HETATM 38 F F25 9UO . B . G 4 -61.81 43.958 -24.633 0.35 44.79 ? F25 9UO 504 A 1 HETATM 39 F F26 9UO . A . G 4 -61.385 42.005 -25.461 0.65 47.63 ? F26 9UO 504 A 1 HETATM 40 F F26 9UO . B . G 4 -61.396 41.913 -25.387 0.35 52.37 ? F26 9UO 504 A 1 HETATM 41 N N07 9UO . A . G 4 -58.24 41.034 -19.651 0.65 39.93 ? N07 9UO 504 A 1 HETATM 42 N N07 9UO . B . G 4 -57.933 41.302 -19.583 0.35 40.19 ? N07 9UO 504 A 1 HETATM 43 N N09 9UO . A . G 4 -58.994 39.026 -20.721 0.65 40.73 ? N09 9UO 504 A 1 HETATM 44 N N09 9UO . B . G 4 -58.645 39.156 -20.346 0.35 40.57 ? N09 9UO 504 A 1 HETATM 45 N N17 9UO . A . G 4 -59.167 36.143 -20.786 0.65 39.06 ? N17 9UO 504 A 1 HETATM 46 N N17 9UO . B . G 4 -59.665 36.07 -21.938 0.35 39.68 ? N17 9UO 504 A 1 HETATM 47 N N18 9UO . A . G 4 -60.576 39.075 -22.364 0.65 41.48 ? N18 9UO 504 A 1 HETATM 48 N N18 9UO . B . G 4 -60.218 38.911 -21.98 0.35 41.53 ? N18 9UO 504 A 1 HETATM 49 N N20 9UO . A . G 4 -61.577 41.105 -23.115 0.65 41.89 ? N20 9UO 504 A 1 HETATM 50 N N20 9UO . B . G 4 -61.247 40.816 -23.027 0.35 41.95 ? N20 9UO 504 A 1 HETATM 51 N N27 9UO . A . G 4 -59.899 41.019 -21.384 0.65 43.14 ? N27 9UO 504 A 1 HETATM 52 N N27 9UO . B . G 4 -59.588 41 -21.303 0.35 42.14 ? N27 9UO 504 A 1 HETATM 53 CL CL1 9UO . A . G 4 -58.393 33.893 -19.57 0.65 30.94 ? CL1 9UO 504 A 1 HETATM 54 CL CL1 9UO . B . G 4 -60.149 33.743 -23.16 0.35 35.29 ? CL1 9UO 504 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 54 #