data_6ADQ # _model_server_result.job_id sHpaqhLtkAv0-LQcrRI7qQ _model_server_result.datetime_utc '2024-11-04 22:39:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6adq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"PB","auth_seq_id":604}' # _entry.id 6ADQ # _exptl.entry_id 6ADQ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 63.546 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ADQ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ADQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 13 Y N N ? 13 Z N N ? 13 CA N N ? 13 DA N N ? 13 KB N N ? 13 LB N N ? 13 OB N N ? 13 PB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 L SG CYS 351 A CYS 351 1_555 L SG CYS 367 A CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 X SG CYS 351 M CYS 351 1_555 X SG CYS 367 M CYS 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A SG CYS 273 E CYS 273 1_555 Y CU CU . E CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc2 A SG CYS 273 E CYS 273 1_555 Z CU CU . E CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc3 A SG CYS 277 E CYS 277 1_555 Y CU CU . E CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc4 A SG CYS 277 E CYS 277 1_555 Z CU CU . E CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc5 A ND1 HIS 281 E HIS 281 1_555 Y CU CU . E CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc6 A SD MET 284 E MET 284 1_555 Y CU CU . E CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc7 A SD MET 284 E MET 284 1_555 Z CU CU . E CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? covale ? covale1 B CA GLY 56 F GLY 56 1_555 BA C14 HEA . F HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.499 ? covale ? covale2 B NH2 ARG 63 F ARG 63 1_555 BA OMA HEA . F HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? metalc ? metalc8 B NE2 HIS 86 F HIS 86 1_555 BA FE HEA . F HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc9 B ND1 HIS 264 F HIS 264 1_555 CA CU CU . F CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc10 B NE2 HIS 313 F HIS 313 1_555 CA CU CU . F CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc11 B NE2 HIS 314 F HIS 314 1_555 CA CU CU . F CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc12 B NE2 HIS 397 F HIS 397 1_555 AA FE HEA . F HEA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? covale ? covale3 B NH2 ARG 459 F ARG 459 1_555 AA O2D HEA . F HEA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? covale ? covale4 H N CYS 21 Y CYS 21 1_555 KA C1 PLM . Y PLM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale5 H SG CYS 21 Y CYS 21 1_555 LA C37 9XX . Y 9XX 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? covale ? covale6 I N CYS 24 K CYS 24 1_555 OA C1 PLM . K PLM 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale7 I SG CYS 24 K CYS 24 1_555 PA C37 9XX . K 9XX 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? metalc ? metalc13 J NE2 HIS 109 B HIS 109 1_555 RA FE HEM . B HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc14 J NE2 HIS 123 B HIS 123 1_555 QA FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? covale ? covale8 J NH2 ARG 126 B ARG 126 1_555 QA O1D HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.305 ? metalc ? metalc15 J NE2 HIS 211 B HIS 211 1_555 RA FE HEM . B HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc16 J NE2 HIS 226 B HIS 226 1_555 QA FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? metalc ? metalc17 K NE2 HIS 91 C HIS 91 1_555 CB FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc18 K NE2 HIS 192 C HIS 192 1_555 DB FE HEC . C HEC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? metalc ? metalc19 L ND1 HIS 368 A HIS 368 1_555 GB FE1 FES . A FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc20 M SG CYS 273 Q CYS 273 1_555 KB CU CU . Q CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc21 M SG CYS 273 Q CYS 273 1_555 LB CU CU . Q CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc22 M SG CYS 277 Q CYS 277 1_555 KB CU CU . Q CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc23 M SG CYS 277 Q CYS 277 1_555 LB CU CU . Q CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc24 M ND1 HIS 281 Q HIS 281 1_555 KB CU CU . Q CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc25 M SD MET 284 Q MET 284 1_555 KB CU CU . Q CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc26 M SD MET 284 Q MET 284 1_555 LB CU CU . Q CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? covale ? covale9 N CA GLY 56 R GLY 56 1_555 NB C14 HEA . R HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.499 ? covale ? covale10 N NH2 ARG 63 R ARG 63 1_555 NB OMA HEA . R HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? metalc ? metalc27 N NE2 HIS 86 R HIS 86 1_555 NB FE HEA . R HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc28 N ND1 HIS 264 R HIS 264 1_555 OB CU CU . R CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc29 N NE2 HIS 313 R HIS 313 1_555 OB CU CU . R CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc30 N NE2 HIS 314 R HIS 314 1_555 OB CU CU . R CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc31 N NE2 HIS 397 R HIS 397 1_555 MB FE HEA . R HEA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? metalc ? metalc32 N NE2 HIS 399 R HIS 399 1_555 NB FE HEA . R HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? covale ? covale11 N NH2 ARG 459 R ARG 459 1_555 MB O2D HEA . R HEA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? covale ? covale12 T N CYS 21 Z CYS 21 1_555 WB C1 PLM . Z PLM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale13 T SG CYS 21 Z CYS 21 1_555 XB C37 9XX . Z 9XX 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale14 U N CYS 24 W CYS 24 1_555 AC C1 PLM . W PLM 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale15 U SG CYS 24 W CYS 24 1_555 BC C37 9XX . W 9XX 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? metalc ? metalc33 V NE2 HIS 109 N HIS 109 1_555 EC FE HEM . N HEM 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc34 V NE2 HIS 123 N HIS 123 1_555 DC FE HEM . N HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? covale ? covale16 V NH2 ARG 126 N ARG 126 1_555 DC O1D HEM . N HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.305 ? metalc ? metalc35 V NE2 HIS 211 N HIS 211 1_555 EC FE HEM . N HEM 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc36 V NE2 HIS 226 N HIS 226 1_555 DC FE HEM . N HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc37 W NE2 HIS 91 O HIS 91 1_555 MC FE HEC . O HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? metalc ? metalc38 W NE2 HIS 192 O HIS 192 1_555 NC FE HEC . O HEC 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? metalc ? metalc39 X NE2 HIS 348 M HIS 348 1_555 RC FE1 FES . M FES 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? covale ? covale17 SA OA9 CDL . B CDL 603 1_555 VA C17 9Y0 . B 9Y0 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale18 BB C17 9Y0 . B 9Y0 612 1_555 FC OA9 CDL . N CDL 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6ADQ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Y 13 CU E 1 401 401 CU CU . Z 13 CU E 1 402 402 CU CU . AA 14 HEA F 1 601 601 HEA HEA . BA 14 HEA F 1 602 602 HEA HEA . CA 13 CU F 1 603 603 CU CU . DA 13 CU F 1 604 604 CU CU . EA 15 CDL F 1 605 605 CDL CDL . FA 15 CDL F 1 606 606 CDL CDL . GA 16 9Y0 G 1 301 301 9Y0 9Y0 . HA 15 CDL H 1 201 201 CDL CDL . IA 15 CDL D 1 201 201 CDL CDL . JA 16 9Y0 D 1 202 202 9Y0 9Y0 . KA 17 PLM Y 1 301 301 PLM PLM . LA 18 9XX Y 1 302 302 9XX 9XX . MA 16 9Y0 K 1 201 201 9Y0 9Y0 . NA 19 9YF K 1 202 202 9YF 9YF . OA 17 PLM K 1 203 203 PLM PLM . PA 18 9XX K 1 204 204 9XX 9XX . QA 20 HEM B 1 601 601 HEM HEM . RA 20 HEM B 1 602 602 HEM HEM . SA 15 CDL B 1 603 603 CDL CDL . TA 15 CDL B 1 604 604 CDL CDL . UA 15 CDL B 1 605 605 CDL CDL . VA 16 9Y0 B 1 606 606 9Y0 9Y0 . WA 21 MQ9 B 1 607 607 MQ9 MQ9 . XA 21 MQ9 B 1 608 608 MQ9 MQ9 . YA 21 MQ9 B 1 609 609 MQ9 MQ9 . ZA 21 MQ9 B 1 610 610 MQ9 MQ9 . AB 15 CDL B 1 611 611 CDL CDL . BB 16 9Y0 B 1 612 612 9Y0 9Y0 . CB 22 HEC C 1 301 301 HEC HEC . DB 22 HEC C 1 302 302 HEC HEC . EB 19 9YF C 1 303 303 9YF 9YF . FB 21 MQ9 C 1 304 304 MQ9 MQ9 . GB 23 FES A 1 501 501 FES FES . HB 15 CDL A 1 502 502 CDL CDL . IB 19 9YF A 1 503 503 9YF 9YF . JB 19 9YF A 1 504 602 9YF 9YF . KB 13 CU Q 1 401 401 CU CU . LB 13 CU Q 1 402 402 CU CU . MB 14 HEA R 1 601 601 HEA HEA . NB 14 HEA R 1 602 602 HEA HEA . OB 13 CU R 1 603 603 CU CU . PB 13 CU R 1 604 604 CU CU . QB 15 CDL R 1 605 605 CDL CDL . RB 15 CDL R 1 606 606 CDL CDL . SB 16 9Y0 S 1 301 301 9Y0 9Y0 . TB 15 CDL T 1 201 201 CDL CDL . UB 15 CDL P 1 201 201 CDL CDL . VB 16 9Y0 P 1 202 202 9Y0 9Y0 . WB 17 PLM Z 1 301 301 PLM PLM . XB 18 9XX Z 1 302 302 9XX 9XX . YB 16 9Y0 W 1 201 201 9Y0 9Y0 . ZB 19 9YF W 1 202 202 9YF 9YF . AC 17 PLM W 1 203 203 PLM PLM . BC 18 9XX W 1 204 204 9XX 9XX . CC 15 CDL N 1 601 601 CDL CDL . DC 20 HEM N 1 602 603 HEM HEM . EC 20 HEM N 1 603 604 HEM HEM . FC 15 CDL N 1 604 605 CDL CDL . GC 15 CDL N 1 605 606 CDL CDL . HC 15 CDL N 1 606 607 CDL CDL . IC 21 MQ9 N 1 607 608 MQ9 MQ9 . JC 21 MQ9 N 1 608 609 MQ9 MQ9 . KC 21 MQ9 N 1 609 610 MQ9 MQ9 . LC 21 MQ9 N 1 610 611 MQ9 MQ9 . MC 22 HEC O 1 301 301 HEC HEC . NC 22 HEC O 1 302 302 HEC HEC . OC 19 9YF O 1 303 303 9YF 9YF . PC 21 MQ9 O 1 304 304 MQ9 MQ9 . QC 19 9YF M 1 501 613 9YF 9YF . RC 23 FES M 1 502 501 FES FES . SC 15 CDL M 1 503 502 CDL CDL . TC 19 9YF M 1 504 503 9YF 9YF . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id PB _atom_site.label_entity_id 13 _atom_site.Cartn_x 261.783 _atom_site.Cartn_y 204.738 _atom_site.Cartn_z 203.451 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 46.88 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 604 _atom_site.auth_asym_id R _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 86 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #