data_6ADR # _model_server_result.job_id BqtbFwf6cE9T-Qpvn4iAEQ _model_server_result.datetime_utc '2025-02-22 22:32:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6adr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 6ADR # _exptl.entry_id 6ADR _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 24.305 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ADR _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ADR _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 360-meric 360 'complete icosahedral assembly' 1 ? hexameric 6 'icosahedral asymmetric unit' 2 ? 30-meric 30 'icosahedral pentamer' 3 ? 36-meric 36 'icosahedral 23 hexamer' 4 ? hexameric 6 'icosahedral asymmetric unit, std point frame' 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 (1-60) A,B,C,D,E,F,G 2 1 A,B,C,D,E,F,G 3 (1-5) A,B,C,D,E,F,G 4 (1,2,6,10,23,24) A,B,C,D,E,F,G 5 P # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 0.850651 0 0.525731 0.525731 0 -0.850651 0 1 0 -409.69177 95.68533 -298.2364 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.361803 0.587785 0.723607 -0.262866 0.809017 -0.525731 -0.894427 0 0.447214 -199.74263 291.37236 430.77543 3 'point symmetry operation' ? ? -0.67082 0.688191 0.276393 0.16246 0.5 -0.850651 -0.723607 -0.525731 -0.447214 210.96621 353.13098 802.07929 4 'point symmetry operation' ? ? -0.67082 0.16246 -0.723607 0.688191 0.5 -0.525731 0.276393 -0.850651 -0.447214 664.54087 99.92754 600.78228 5 'point symmetry operation' ? ? 0.361803 -0.262866 -0.894427 0.587785 0.809017 0 0.723607 -0.525731 0.447214 534.15658 -118.31941 105.07001 6 'point symmetry operation' ? ? -1 0 0 0 1 0 0 0 -1 596.39978 0 593.565 7 'point symmetry operation' ? ? -0.361803 -0.587785 -0.723607 -0.262866 0.809017 -0.525731 0.894427 0 -0.447214 796.14242 291.37236 162.78958 8 'point symmetry operation' ? ? 0.67082 -0.688191 -0.276393 0.16246 0.5 -0.850651 0.723607 0.525731 0.447214 385.43357 353.13098 -208.51429 9 'point symmetry operation' ? ? 0.67082 -0.16246 0.723607 0.688191 0.5 -0.525731 -0.276393 0.850651 0.447214 -68.14108 99.92754 -7.21727 10 'point symmetry operation' ? ? -0.361803 0.262866 0.894427 0.587785 0.809017 0 -0.723607 0.525731 -0.447214 62.2432 -118.31941 488.49499 11 'point symmetry operation' ? ? -0.447214 0 -0.894427 0 -1 0 -0.894427 0 0.447214 697.00929 596.4728 430.77539 12 'point symmetry operation' ? ? 0.638197 -0.262866 -0.723607 0.262866 -0.809017 0.525731 -0.723607 -0.525731 -0.447214 401.03968 305.10044 802.07929 13 'point symmetry operation' ? ? 0.947214 0.16246 0.276393 -0.16246 -0.5 0.850651 0.276393 -0.850651 -0.447214 -114.73919 243.34182 600.78231 14 'point symmetry operation' ? ? 0.052786 0.688191 0.723607 -0.688191 -0.5 0.525731 0.723607 -0.525731 0.447214 -137.53845 496.54526 105.07004 15 'point symmetry operation' ? ? -0.809017 0.587785 0 -0.587785 -0.809017 0 0 0 1 364.14969 714.79221 -0.00001 16 'point symmetry operation' ? ? 0.447214 0 0.894427 0 -1 0 0.894427 0 -0.447214 -100.6095 596.4728 162.78961 17 'point symmetry operation' ? ? -0.638197 0.262866 0.723607 0.262866 -0.809017 0.525731 0.723607 0.525731 0.447214 195.3601 305.10044 -208.51428 18 'point symmetry operation' ? ? -0.947214 -0.16246 -0.276393 -0.16246 -0.5 0.850651 -0.276393 0.850651 0.447214 711.13897 243.34182 -7.2173 19 'point symmetry operation' ? ? -0.052786 -0.688191 -0.723607 -0.688191 -0.5 0.525731 -0.723607 0.525731 -0.447214 733.93824 496.54526 488.49497 20 'point symmetry operation' ? ? 0.809017 -0.587785 0 -0.587785 -0.809017 0 0 0 -1 232.25009 714.79221 593.56502 21 'point symmetry operation' ? ? 0.447214 0.850651 0.276393 0.525731 0 -0.850651 -0.723607 0.525731 -0.447214 -170.88285 393.92173 488.495 22 'point symmetry operation' ? ? -0.309017 0.951057 0 0.951057 0.309017 0 0 0 -1 106.70906 -77.52866 593.56502 23 'point symmetry operation' ? ? -0.361803 0.587785 -0.723607 0.262866 0.809017 0.525731 0.894427 0 -0.447214 445.5445 -177.45619 162.78959 24 'point symmetry operation' ? ? 0.361803 0.262866 -0.894427 -0.587785 0.809017 0 0.723607 0.525731 0.447214 377.36441 232.23558 -208.51429 25 'point symmetry operation' ? ? 0.861803 0.425325 -0.276393 -0.425325 0.309017 -0.850651 -0.276393 0.850651 0.447214 -3.60864 585.36655 -7.21728 26 'point symmetry operation' ? ? -0.447214 0.850651 -0.276393 -0.525731 0 0.850651 0.723607 0.525731 0.447214 259.89255 202.55107 -208.51429 27 'point symmetry operation' ? ? -0.138197 0.425325 -0.894427 -0.951057 -0.309017 0 -0.276393 0.850651 0.447214 478.01292 674.00146 -7.2173 28 'point symmetry operation' ? ? 0.638197 0.262866 -0.723607 -0.262866 -0.809017 -0.525731 -0.723607 0.525731 -0.447214 244.24752 773.92899 488.49498 29 'point symmetry operation' ? ? 0.809017 0.587785 0 0.587785 -0.809017 0 0 0 -1 -118.34783 364.23722 593.56503 30 'point symmetry operation' ? ? 0.138197 0.951057 0.276393 0.425325 -0.309017 0.850651 0.894427 0 -0.447214 -108.67866 11.10625 162.78961 31 'point symmetry operation' ? ? -0.447214 -0.850651 -0.276393 0.525731 0 -0.850651 0.723607 -0.525731 0.447214 767.28263 393.92173 105.07 32 'point symmetry operation' ? ? 0.309017 -0.951057 0 0.951057 0.309017 0 0 0 1 489.69072 -77.52866 -0.00002 33 'point symmetry operation' ? ? 0.361803 -0.587785 0.723607 0.262866 0.809017 0.525731 -0.894427 0 0.447214 150.85528 -177.45619 430.77541 34 'point symmetry operation' ? ? -0.361803 -0.262866 0.894427 -0.587785 0.809017 0 -0.723607 -0.525731 -0.447214 219.03537 232.23558 802.07929 35 'point symmetry operation' ? ? -0.861803 -0.425325 0.276393 -0.425325 0.309017 -0.850651 0.276393 -0.850651 -0.447214 600.00842 585.36655 600.78228 36 'point symmetry operation' ? ? 0.447214 -0.850651 0.276393 -0.525731 0 0.850651 -0.723607 -0.525731 -0.447214 336.50724 202.55107 802.07929 37 'point symmetry operation' ? ? 0.138197 -0.425325 0.894427 -0.951057 -0.309017 0 0.276393 -0.850651 -0.447214 118.38686 674.00146 600.7823 38 'point symmetry operation' ? ? -0.638197 -0.262866 0.723607 -0.262866 -0.809017 -0.525731 0.723607 -0.525731 0.447214 352.15227 773.92899 105.07002 39 'point symmetry operation' ? ? -0.809017 -0.587785 0 0.587785 -0.809017 0 0 0 1 714.74761 364.23722 -0.00003 40 'point symmetry operation' ? ? -0.138197 -0.951057 -0.276393 0.425325 -0.309017 0.850651 -0.894427 0 0.447214 705.07845 11.10625 430.77539 41 'point symmetry operation' ? ? 0.447214 0.525731 -0.723607 0.850651 0 0.525731 0.276393 -0.850651 -0.447214 222.80255 -111.45537 600.78229 42 'point symmetry operation' ? ? 0.67082 0.688191 -0.276393 -0.16246 0.5 0.850651 0.723607 -0.525731 0.447214 -25.0536 -54.89458 105.07003 43 'point symmetry operation' ? ? 0.309017 0.951057 0 -0.951057 0.309017 0 0 0 1 -77.58862 489.68122 0 44 'point symmetry operation' ? ? -0.138197 0.951057 -0.276393 -0.425325 -0.309017 -0.850651 -0.894427 0 0.447214 137.7991 769.68679 430.77541 45 'point symmetry operation' ? ? -0.052786 0.688191 -0.723607 0.688191 -0.5 -0.525731 -0.723607 -0.525731 -0.447214 323.45106 398.16394 802.07929 46 'point symmetry operation' ? ? -0.447214 0.525731 0.723607 -0.850651 0 -0.525731 -0.276393 -0.850651 0.447214 60.01294 707.92817 500.17279 47 'point symmetry operation' ? ? -0.947214 0.16246 -0.276393 0.16246 -0.5 -0.850651 -0.276393 -0.850651 0.447214 614.23611 651.36738 500.17277 48 'point symmetry operation' ? ? -0.138197 -0.425325 -0.894427 0.951057 -0.309017 0 -0.276393 -0.850651 0.447214 731.70798 106.79158 500.17276 49 'point symmetry operation' ? ? 0.861803 -0.425325 -0.276393 0.425325 0.309017 0.850651 -0.276393 -0.850651 0.447214 250.08642 -173.21399 500.17278 50 'point symmetry operation' ? ? 0.67082 0.16246 0.723607 -0.688191 0.5 0.525731 -0.276393 -0.850651 0.447214 -165.04395 198.30886 500.1728 51 'point symmetry operation' ? ? 0.447214 -0.525731 -0.723607 -0.850651 0 -0.525731 0.276393 0.850651 -0.447214 536.38684 707.92817 93.39221 52 'point symmetry operation' ? ? 0.947214 -0.16246 0.276393 0.16246 -0.5 -0.850651 0.276393 0.850651 -0.447214 -17.83633 651.36738 93.39223 53 'point symmetry operation' ? ? 0.138197 0.425325 0.894427 0.951057 -0.309017 0 0.276393 0.850651 -0.447214 -135.30819 106.79158 93.39224 54 'point symmetry operation' ? ? -0.861803 0.425325 0.276393 0.425325 0.309017 0.850651 0.276393 0.850651 -0.447214 346.31337 -173.21399 93.39222 55 'point symmetry operation' ? ? -0.67082 -0.16246 -0.723607 -0.688191 0.5 0.525731 0.276393 0.850651 -0.447214 761.44373 198.30886 93.3922 56 'point symmetry operation' ? ? -0.447214 -0.525731 0.723607 0.850651 0 0.525731 -0.276393 0.850651 0.447214 373.59723 -111.45537 -7.21729 57 'point symmetry operation' ? ? -0.67082 -0.688191 0.276393 -0.16246 0.5 0.850651 -0.723607 0.525731 -0.447214 621.45338 -54.89458 488.49497 58 'point symmetry operation' ? ? -0.309017 -0.951057 0 -0.951057 0.309017 0 0 0 -1 673.9884 489.68122 593.565 59 'point symmetry operation' ? ? 0.138197 -0.951057 0.276393 -0.425325 -0.309017 -0.850651 0.894427 0 -0.447214 458.60068 769.68679 162.78959 60 'point symmetry operation' ? ? 0.052786 -0.688191 0.723607 0.688191 -0.5 -0.525731 0.723607 0.525731 0.447214 272.94872 398.16394 -208.51429 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 4 R CYS 39 1_555 E SG CYS 185 R CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc1 E OG SER 17 R SER 52 1_555 F MG MG . R MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc2 E OG SER 19 R SER 54 1_555 F MG MG . R MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc3 E OG1 THR 83 R THR 118 1_555 F MG MG . R MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.85 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6ADR _atom_sites.fract_transf_matrix[1][1] 0.001955 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.001955 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001955 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 MG R 1 301 999 MG MG . G 7 HOH B 1 301 1 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 6 _atom_site.Cartn_x 365.708 _atom_site.Cartn_y 444.134 _atom_site.Cartn_z 281.324 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 151.78 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 301 _atom_site.auth_asym_id R _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #