data_6AEX # _model_server_result.job_id T6AHfQrh9H3wdYWfEqTN-Q _model_server_result.datetime_utc '2024-10-19 05:28:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6aex # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6AEX # _exptl.entry_id 6AEX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6AEX _cell.length_a 83.82 _cell.length_b 83.82 _cell.length_c 81.398 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AEX _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 U CYS 96 1_555 A SG CYS 123 U CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf2 A SG CYS 99 U CYS 99 1_555 A SG CYS 106 U CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf3 A SG CYS 116 U CYS 116 1_555 A SG CYS 145 U CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 151 U CYS 151 1_555 A SG CYS 168 U CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf5 A SG CYS 169 U CYS 169 1_555 A SG CYS 174 U CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf6 A SG CYS 192 U CYS 192 1_555 A SG CYS 220 U CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf7 A SG CYS 195 U CYS 195 1_555 A SG CYS 203 U CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf8 A SG CYS 213 U CYS 213 1_555 A SG CYS 239 U CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf9 A SG CYS 245 U CYS 245 1_555 A SG CYS 264 U CYS 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf10 A SG CYS 265 U CYS 265 1_555 A SG CYS 270 U CYS 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? covale ? covale1 A ND2 ASN 160 U ASN 160 1_555 B C1 NAG . U NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.59 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6AEX _atom_sites.fract_transf_matrix[1][1] 0.01193 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01193 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012285 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG U 1 301 1160 NAG NAG . C 3 HOH U 1 401 19 HOH HOH . C 3 HOH U 2 402 20 HOH HOH . C 3 HOH U 3 403 3 HOH HOH . C 3 HOH U 4 404 28 HOH HOH . C 3 HOH U 5 405 16 HOH HOH . C 3 HOH U 6 406 2 HOH HOH . C 3 HOH U 7 407 14 HOH HOH . C 3 HOH U 8 408 6 HOH HOH . C 3 HOH U 9 409 12 HOH HOH . C 3 HOH U 10 410 29 HOH HOH . C 3 HOH U 11 411 24 HOH HOH . C 3 HOH U 12 412 10 HOH HOH . C 3 HOH U 13 413 21 HOH HOH . C 3 HOH U 14 414 8 HOH HOH . C 3 HOH U 15 415 7 HOH HOH . C 3 HOH U 16 416 1 HOH HOH . C 3 HOH U 17 417 5 HOH HOH . C 3 HOH U 18 418 26 HOH HOH . C 3 HOH U 19 419 4 HOH HOH . C 3 HOH U 20 420 18 HOH HOH . C 3 HOH U 21 421 11 HOH HOH . C 3 HOH U 22 422 13 HOH HOH . C 3 HOH U 23 423 25 HOH HOH . C 3 HOH U 24 424 17 HOH HOH . C 3 HOH U 25 425 27 HOH HOH . C 3 HOH U 26 426 23 HOH HOH . C 3 HOH U 27 427 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 53.527 35.393 40.331 1 110.67 ? C1 NAG 301 U 1 HETATM 2 C C2 NAG . . . B 2 52.854 34.512 41.373 1 112.23 ? C2 NAG 301 U 1 HETATM 3 C C3 NAG . . . B 2 52.01 35.37 42.311 1 116.43 ? C3 NAG 301 U 1 HETATM 4 C C4 NAG . . . B 2 52.847 36.495 42.909 1 114.38 ? C4 NAG 301 U 1 HETATM 5 C C5 NAG . . . B 2 53.589 37.275 41.822 1 110.54 ? C5 NAG 301 U 1 HETATM 6 C C6 NAG . . . B 2 54.58 38.265 42.392 1 106.84 ? C6 NAG 301 U 1 HETATM 7 C C7 NAG . . . B 2 52.55 32.428 40.097 1 96.95 ? C7 NAG 301 U 1 HETATM 8 C C8 NAG . . . B 2 51.553 31.468 39.519 1 91.82 ? C8 NAG 301 U 1 HETATM 9 N N2 NAG . . . B 2 52.039 33.481 40.746 1 104.64 ? N2 NAG 301 U 1 HETATM 10 O O3 NAG . . . B 2 51.473 34.559 43.35 1 119.65 ? O3 NAG 301 U 1 HETATM 11 O O4 NAG . . . B 2 52.006 37.403 43.615 1 115.17 ? O4 NAG 301 U 1 HETATM 12 O O5 NAG . . . B 2 54.332 36.377 40.983 1 108.6 ? O5 NAG 301 U 1 HETATM 13 O O6 NAG . . . B 2 54.646 39.453 41.613 1 104.57 ? O6 NAG 301 U 1 HETATM 14 O O7 NAG . . . B 2 53.76 32.255 39.983 1 95.17 ? O7 NAG 301 U 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #