data_6AF2 # _model_server_result.job_id Evuu22Nv_O1FtTaQEnntcA _model_server_result.datetime_utc '2024-10-19 19:14:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6af2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 6AF2 # _exptl.entry_id 6AF2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 202.34 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SPERMINE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6AF2 _cell.length_a 78.025 _cell.length_b 104.837 _cell.length_c 111.11 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AF2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,L,N 1 1 B,D,H,I,J,K,M,O 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1/2,-y,z+1/2 -1 0 0 0 -1 0 0 0 1 -39.0125 0 55.555 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 J N N # _chem_comp.formula 'C10 H26 N4' _chem_comp.formula_weight 202.34 _chem_comp.id SPM _chem_comp.mon_nstd_flag . _chem_comp.name SPERMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 SPM sing 330 n n N1 HN11 SPM sing 331 n n N1 HN12 SPM sing 332 n n C2 C3 SPM sing 333 n n C2 H21 SPM sing 334 n n C2 H22 SPM sing 335 n n C3 C4 SPM sing 336 n n C3 H31 SPM sing 337 n n C3 H32 SPM sing 338 n n C4 N5 SPM sing 339 n n C4 H41 SPM sing 340 n n C4 H42 SPM sing 341 n n N5 C6 SPM sing 342 n n N5 HN5 SPM sing 343 n n C6 C7 SPM sing 344 n n C6 H61 SPM sing 345 n n C6 H62 SPM sing 346 n n C7 C8 SPM sing 347 n n C7 H71 SPM sing 348 n n C7 H72 SPM sing 349 n n C8 C9 SPM sing 350 n n C8 H81 SPM sing 351 n n C8 H82 SPM sing 352 n n C9 N10 SPM sing 353 n n C9 H91 SPM sing 354 n n C9 H92 SPM sing 355 n n N10 C11 SPM sing 356 n n N10 HN0 SPM sing 357 n n C11 C12 SPM sing 358 n n C11 H111 SPM sing 359 n n C11 H112 SPM sing 360 n n C12 C13 SPM sing 361 n n C12 H121 SPM sing 362 n n C12 H122 SPM sing 363 n n C13 N14 SPM sing 364 n n C13 H131 SPM sing 365 n n C13 H132 SPM sing 366 n n N14 HN41 SPM sing 367 n n N14 HN42 SPM sing 368 n n # _atom_sites.entry_id 6AF2 _atom_sites.fract_transf_matrix[1][1] 0.012816 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009539 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SPM A 1 201 1 SPM SPM . F 3 1PE A 1 202 1 1PE 1PE . G 4 PEG A 1 203 3 PEG PEG . H 2 SPM B 1 201 2 SPM SPM . I 4 PEG B 1 202 2 PEG PEG . J 2 SPM D 1 201 3 SPM SPM . K 3 1PE D 1 202 2 1PE 1PE . L 5 HOH A 1 301 78 HOH HOH . L 5 HOH A 2 302 10 HOH HOH . L 5 HOH A 3 303 47 HOH HOH . L 5 HOH A 4 304 106 HOH HOH . L 5 HOH A 5 305 5 HOH HOH . L 5 HOH A 6 306 61 HOH HOH . L 5 HOH A 7 307 18 HOH HOH . L 5 HOH A 8 308 76 HOH HOH . L 5 HOH A 9 309 58 HOH HOH . L 5 HOH A 10 310 85 HOH HOH . L 5 HOH A 11 311 24 HOH HOH . L 5 HOH A 12 312 102 HOH HOH . L 5 HOH A 13 313 30 HOH HOH . L 5 HOH A 14 314 42 HOH HOH . L 5 HOH A 15 315 68 HOH HOH . L 5 HOH A 16 316 34 HOH HOH . L 5 HOH A 17 317 62 HOH HOH . L 5 HOH A 18 318 45 HOH HOH . L 5 HOH A 19 319 69 HOH HOH . L 5 HOH A 20 320 60 HOH HOH . L 5 HOH A 21 321 74 HOH HOH . L 5 HOH A 22 322 84 HOH HOH . L 5 HOH A 23 323 39 HOH HOH . L 5 HOH A 24 324 92 HOH HOH . L 5 HOH A 25 325 88 HOH HOH . L 5 HOH A 26 326 35 HOH HOH . L 5 HOH A 27 327 116 HOH HOH . L 5 HOH A 28 328 4 HOH HOH . L 5 HOH A 29 329 57 HOH HOH . L 5 HOH A 30 330 123 HOH HOH . M 5 HOH B 1 301 9 HOH HOH . M 5 HOH B 2 302 44 HOH HOH . M 5 HOH B 3 303 12 HOH HOH . M 5 HOH B 4 304 95 HOH HOH . M 5 HOH B 5 305 54 HOH HOH . M 5 HOH B 6 306 125 HOH HOH . M 5 HOH B 7 307 27 HOH HOH . M 5 HOH B 8 308 103 HOH HOH . M 5 HOH B 9 309 23 HOH HOH . M 5 HOH B 10 310 96 HOH HOH . M 5 HOH B 11 311 52 HOH HOH . M 5 HOH B 12 312 29 HOH HOH . M 5 HOH B 13 313 37 HOH HOH . M 5 HOH B 14 314 81 HOH HOH . M 5 HOH B 15 315 70 HOH HOH . M 5 HOH B 16 316 13 HOH HOH . M 5 HOH B 17 317 108 HOH HOH . M 5 HOH B 18 318 49 HOH HOH . M 5 HOH B 19 319 59 HOH HOH . M 5 HOH B 20 320 75 HOH HOH . M 5 HOH B 21 321 8 HOH HOH . M 5 HOH B 22 322 72 HOH HOH . M 5 HOH B 23 323 22 HOH HOH . M 5 HOH B 24 324 26 HOH HOH . M 5 HOH B 25 325 32 HOH HOH . M 5 HOH B 26 326 107 HOH HOH . M 5 HOH B 27 327 66 HOH HOH . M 5 HOH B 28 328 19 HOH HOH . M 5 HOH B 29 329 110 HOH HOH . M 5 HOH B 30 330 124 HOH HOH . M 5 HOH B 31 331 43 HOH HOH . M 5 HOH B 32 332 38 HOH HOH . M 5 HOH B 33 333 46 HOH HOH . N 5 HOH C 1 201 105 HOH HOH . N 5 HOH C 2 202 91 HOH HOH . N 5 HOH C 3 203 113 HOH HOH . N 5 HOH C 4 204 7 HOH HOH . N 5 HOH C 5 205 48 HOH HOH . N 5 HOH C 6 206 111 HOH HOH . N 5 HOH C 7 207 104 HOH HOH . N 5 HOH C 8 208 93 HOH HOH . N 5 HOH C 9 209 73 HOH HOH . N 5 HOH C 10 210 55 HOH HOH . N 5 HOH C 11 211 15 HOH HOH . N 5 HOH C 12 212 90 HOH HOH . N 5 HOH C 13 213 36 HOH HOH . N 5 HOH C 14 214 1 HOH HOH . N 5 HOH C 15 215 109 HOH HOH . N 5 HOH C 16 216 53 HOH HOH . N 5 HOH C 17 217 77 HOH HOH . N 5 HOH C 18 218 11 HOH HOH . N 5 HOH C 19 219 25 HOH HOH . N 5 HOH C 20 220 97 HOH HOH . N 5 HOH C 21 221 2 HOH HOH . N 5 HOH C 22 222 83 HOH HOH . N 5 HOH C 23 223 89 HOH HOH . N 5 HOH C 24 224 33 HOH HOH . N 5 HOH C 25 225 14 HOH HOH . N 5 HOH C 26 226 86 HOH HOH . N 5 HOH C 27 227 65 HOH HOH . N 5 HOH C 28 228 50 HOH HOH . N 5 HOH C 29 229 80 HOH HOH . N 5 HOH C 30 230 79 HOH HOH . N 5 HOH C 31 231 21 HOH HOH . N 5 HOH C 32 232 118 HOH HOH . O 5 HOH D 1 301 121 HOH HOH . O 5 HOH D 2 302 63 HOH HOH . O 5 HOH D 3 303 20 HOH HOH . O 5 HOH D 4 304 17 HOH HOH . O 5 HOH D 5 305 6 HOH HOH . O 5 HOH D 6 306 3 HOH HOH . O 5 HOH D 7 307 82 HOH HOH . O 5 HOH D 8 308 64 HOH HOH . O 5 HOH D 9 309 41 HOH HOH . O 5 HOH D 10 310 31 HOH HOH . O 5 HOH D 11 311 87 HOH HOH . O 5 HOH D 12 312 40 HOH HOH . O 5 HOH D 13 313 115 HOH HOH . O 5 HOH D 14 314 101 HOH HOH . O 5 HOH D 15 315 94 HOH HOH . O 5 HOH D 16 316 120 HOH HOH . O 5 HOH D 17 317 122 HOH HOH . O 5 HOH D 18 318 16 HOH HOH . O 5 HOH D 19 319 71 HOH HOH . O 5 HOH D 20 320 98 HOH HOH . O 5 HOH D 21 321 99 HOH HOH . O 5 HOH D 22 322 28 HOH HOH . O 5 HOH D 23 323 51 HOH HOH . O 5 HOH D 24 324 56 HOH HOH . O 5 HOH D 25 325 112 HOH HOH . O 5 HOH D 26 326 100 HOH HOH . O 5 HOH D 27 327 114 HOH HOH . O 5 HOH D 28 328 67 HOH HOH . O 5 HOH D 29 329 119 HOH HOH . O 5 HOH D 30 330 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 SPM . . . E 2 -36.104 10.704 16.874 1 28.64 ? N1 SPM 201 A 1 HETATM 2 C C2 SPM . . . E 2 -35.179 11.685 16.314 1 34.06 ? C2 SPM 201 A 1 HETATM 3 C C3 SPM . . . E 2 -33.981 11.023 15.616 1 37.05 ? C3 SPM 201 A 1 HETATM 4 C C4 SPM . . . E 2 -32.744 11.933 15.595 1 37.04 ? C4 SPM 201 A 1 HETATM 5 N N5 SPM . . . E 2 -32.127 12.161 16.913 1 36.82 ? N5 SPM 201 A 1 HETATM 6 C C6 SPM . . . E 2 -32.117 13.59 17.283 1 34.45 ? C6 SPM 201 A 1 HETATM 7 C C7 SPM . . . E 2 -30.959 13.902 18.253 1 35.29 ? C7 SPM 201 A 1 HETATM 8 C C8 SPM . . . E 2 -30.61 15.379 18.435 1 37.56 ? C8 SPM 201 A 1 HETATM 9 C C9 SPM . . . E 2 -29.292 15.744 17.734 1 40.29 ? C9 SPM 201 A 1 HETATM 10 N N10 SPM . . . E 2 -29.218 17.198 17.577 1 35.89 ? N10 SPM 201 A 1 HETATM 11 C C11 SPM . . . E 2 -27.857 17.619 17.303 1 36.07 ? C11 SPM 201 A 1 HETATM 12 C C12 SPM . . . E 2 -27.109 17.839 18.622 1 39.58 ? C12 SPM 201 A 1 HETATM 13 C C13 SPM . . . E 2 -25.77 17.088 18.629 1 34.11 ? C13 SPM 201 A 1 HETATM 14 N N14 SPM . . . E 2 -24.693 18.02 18.917 1 28.83 ? N14 SPM 201 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #