data_6AFG # _model_server_result.job_id 9a4A_vtDylizRkLrXtC6Bw _model_server_result.datetime_utc '2024-11-01 05:36:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6afg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6AFG # _exptl.entry_id 6AFG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 161.157 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-methylindole-2,3-dione _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6AFG _cell.length_a 75.45 _cell.length_b 75.45 _cell.length_c 75.64 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AFG _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -25.213333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 106 A CYS 106 1_555 B C9 72V . A 72V 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 sing covale ? covale2 A NZ LYS 148 A LYS 148 1_555 C C9 72V . A 72V 202 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.298 doub # _chem_comp.formula 'C9 H7 N O2' _chem_comp.formula_weight 161.157 _chem_comp.id 72V _chem_comp.mon_nstd_flag . _chem_comp.name 1-methylindole-2,3-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C3 72V doub 1 n y C4 C5 72V sing 2 n y C3 C2 72V sing 3 n y C5 C6 72V doub 4 n y C2 C1 72V doub 5 n y C6 C1 72V sing 6 n y C6 N7 72V sing 7 n n C1 C9 72V sing 8 n n N7 C10 72V sing 9 n n N7 C8 72V sing 10 n n C9 O12 72V doub 11 n n C9 C8 72V sing 12 n n C8 O11 72V doub 13 n n C2 H3 72V sing 14 n n C3 H4 72V sing 15 n n C4 H5 72V sing 16 n n C5 H6 72V sing 17 n n C10 H7 72V sing 18 n n C10 H8 72V sing 19 n n C10 H9 72V sing 20 n n # _atom_sites.entry_id 6AFG _atom_sites.fract_transf_matrix[1][1] 0.013254 _atom_sites.fract_transf_matrix[1][2] 0.007652 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015304 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01322 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 72V A 1 201 201 72V 72V . C 2 72V A 1 202 202 72V 72V . D 3 HOH A 1 301 301 HOH HOH . D 3 HOH A 2 302 302 HOH HOH . D 3 HOH A 3 303 303 HOH HOH . D 3 HOH A 4 304 305 HOH HOH . D 3 HOH A 5 305 306 HOH HOH . D 3 HOH A 6 306 307 HOH HOH . D 3 HOH A 7 307 308 HOH HOH . D 3 HOH A 8 308 309 HOH HOH . D 3 HOH A 9 309 310 HOH HOH . D 3 HOH A 10 310 311 HOH HOH . D 3 HOH A 11 311 312 HOH HOH . D 3 HOH A 12 312 313 HOH HOH . D 3 HOH A 13 313 314 HOH HOH . D 3 HOH A 14 314 315 HOH HOH . D 3 HOH A 15 315 316 HOH HOH . D 3 HOH A 16 316 317 HOH HOH . D 3 HOH A 17 317 318 HOH HOH . D 3 HOH A 18 318 319 HOH HOH . D 3 HOH A 19 319 320 HOH HOH . D 3 HOH A 20 320 321 HOH HOH . D 3 HOH A 21 321 322 HOH HOH . D 3 HOH A 22 322 323 HOH HOH . D 3 HOH A 23 323 324 HOH HOH . D 3 HOH A 24 324 325 HOH HOH . D 3 HOH A 25 325 326 HOH HOH . D 3 HOH A 26 326 327 HOH HOH . D 3 HOH A 27 327 328 HOH HOH . D 3 HOH A 28 328 329 HOH HOH . D 3 HOH A 29 329 330 HOH HOH . D 3 HOH A 30 330 331 HOH HOH . D 3 HOH A 31 331 332 HOH HOH . D 3 HOH A 32 332 333 HOH HOH . D 3 HOH A 33 333 334 HOH HOH . D 3 HOH A 34 334 335 HOH HOH . D 3 HOH A 35 335 336 HOH HOH . D 3 HOH A 36 336 337 HOH HOH . D 3 HOH A 37 337 338 HOH HOH . D 3 HOH A 38 338 339 HOH HOH . D 3 HOH A 39 339 340 HOH HOH . D 3 HOH A 40 340 341 HOH HOH . D 3 HOH A 41 341 342 HOH HOH . D 3 HOH A 42 342 343 HOH HOH . D 3 HOH A 43 343 344 HOH HOH . D 3 HOH A 44 344 345 HOH HOH . D 3 HOH A 45 345 346 HOH HOH . D 3 HOH A 46 346 347 HOH HOH . D 3 HOH A 47 347 348 HOH HOH . D 3 HOH A 48 348 349 HOH HOH . D 3 HOH A 49 349 350 HOH HOH . D 3 HOH A 50 350 351 HOH HOH . D 3 HOH A 51 351 352 HOH HOH . D 3 HOH A 52 352 353 HOH HOH . D 3 HOH A 53 353 354 HOH HOH . D 3 HOH A 54 354 355 HOH HOH . D 3 HOH A 55 355 356 HOH HOH . D 3 HOH A 56 356 357 HOH HOH . D 3 HOH A 57 357 358 HOH HOH . D 3 HOH A 58 358 359 HOH HOH . D 3 HOH A 59 359 360 HOH HOH . D 3 HOH A 60 360 361 HOH HOH . D 3 HOH A 61 361 362 HOH HOH . D 3 HOH A 62 362 363 HOH HOH . D 3 HOH A 63 363 364 HOH HOH . D 3 HOH A 64 364 365 HOH HOH . D 3 HOH A 65 365 366 HOH HOH . D 3 HOH A 66 366 304 HOH HOH . D 3 HOH A 67 367 367 HOH HOH . D 3 HOH A 68 368 368 HOH HOH . D 3 HOH A 69 369 369 HOH HOH . D 3 HOH A 70 370 370 HOH HOH . D 3 HOH A 71 371 371 HOH HOH . D 3 HOH A 72 372 372 HOH HOH . D 3 HOH A 73 373 373 HOH HOH . D 3 HOH A 74 374 374 HOH HOH . D 3 HOH A 75 375 375 HOH HOH . D 3 HOH A 76 376 376 HOH HOH . D 3 HOH A 77 377 377 HOH HOH . D 3 HOH A 78 378 378 HOH HOH . D 3 HOH A 79 379 379 HOH HOH . D 3 HOH A 80 380 380 HOH HOH . D 3 HOH A 81 381 381 HOH HOH . D 3 HOH A 82 382 382 HOH HOH . D 3 HOH A 83 383 383 HOH HOH . D 3 HOH A 84 384 384 HOH HOH . D 3 HOH A 85 385 385 HOH HOH . D 3 HOH A 86 386 386 HOH HOH . D 3 HOH A 87 387 387 HOH HOH . D 3 HOH A 88 388 388 HOH HOH . D 3 HOH A 89 389 389 HOH HOH . D 3 HOH A 90 390 390 HOH HOH . D 3 HOH A 91 391 391 HOH HOH . D 3 HOH A 92 392 392 HOH HOH . D 3 HOH A 93 393 393 HOH HOH . D 3 HOH A 94 394 394 HOH HOH . D 3 HOH A 95 395 395 HOH HOH . D 3 HOH A 96 396 396 HOH HOH . D 3 HOH A 97 397 397 HOH HOH . D 3 HOH A 98 398 398 HOH HOH . D 3 HOH A 99 399 399 HOH HOH . D 3 HOH A 100 400 400 HOH HOH . D 3 HOH A 101 401 401 HOH HOH . D 3 HOH A 102 402 402 HOH HOH . D 3 HOH A 103 403 403 HOH HOH . D 3 HOH A 104 404 404 HOH HOH . D 3 HOH A 105 405 405 HOH HOH . D 3 HOH A 106 406 406 HOH HOH . D 3 HOH A 107 407 407 HOH HOH . D 3 HOH A 108 408 408 HOH HOH . D 3 HOH A 109 409 409 HOH HOH . D 3 HOH A 110 410 410 HOH HOH . D 3 HOH A 111 411 411 HOH HOH . D 3 HOH A 112 412 412 HOH HOH . D 3 HOH A 113 413 413 HOH HOH . D 3 HOH A 114 414 414 HOH HOH . D 3 HOH A 115 415 415 HOH HOH . D 3 HOH A 116 416 416 HOH HOH . D 3 HOH A 117 417 417 HOH HOH . D 3 HOH A 118 418 418 HOH HOH . D 3 HOH A 119 419 419 HOH HOH . D 3 HOH A 120 420 420 HOH HOH . D 3 HOH A 121 421 421 HOH HOH . D 3 HOH A 122 422 422 HOH HOH . D 3 HOH A 123 423 423 HOH HOH . D 3 HOH A 124 424 424 HOH HOH . D 3 HOH A 125 425 425 HOH HOH . D 3 HOH A 126 426 426 HOH HOH . D 3 HOH A 127 427 427 HOH HOH . D 3 HOH A 128 428 428 HOH HOH . D 3 HOH A 129 429 429 HOH HOH . D 3 HOH A 130 430 430 HOH HOH . D 3 HOH A 131 431 431 HOH HOH . D 3 HOH A 132 432 432 HOH HOH . D 3 HOH A 133 433 433 HOH HOH . D 3 HOH A 134 434 434 HOH HOH . D 3 HOH A 135 435 435 HOH HOH . D 3 HOH A 136 436 436 HOH HOH . D 3 HOH A 137 437 437 HOH HOH . D 3 HOH A 138 438 438 HOH HOH . D 3 HOH A 139 439 439 HOH HOH . D 3 HOH A 140 440 440 HOH HOH . D 3 HOH A 141 441 441 HOH HOH . D 3 HOH A 142 442 442 HOH HOH . D 3 HOH A 143 443 443 HOH HOH . D 3 HOH A 144 444 444 HOH HOH . D 3 HOH A 145 445 445 HOH HOH . D 3 HOH A 146 446 446 HOH HOH . D 3 HOH A 147 447 447 HOH HOH . D 3 HOH A 148 448 448 HOH HOH . D 3 HOH A 149 449 449 HOH HOH . D 3 HOH A 150 450 450 HOH HOH . D 3 HOH A 151 451 451 HOH HOH . D 3 HOH A 152 452 452 HOH HOH . D 3 HOH A 153 453 453 HOH HOH . D 3 HOH A 154 454 454 HOH HOH . D 3 HOH A 155 455 455 HOH HOH . D 3 HOH A 156 456 456 HOH HOH . D 3 HOH A 157 457 457 HOH HOH . D 3 HOH A 158 458 458 HOH HOH . D 3 HOH A 159 459 459 HOH HOH . D 3 HOH A 160 460 460 HOH HOH . D 3 HOH A 161 461 461 HOH HOH . D 3 HOH A 162 462 462 HOH HOH . D 3 HOH A 163 463 463 HOH HOH . D 3 HOH A 164 464 464 HOH HOH . D 3 HOH A 165 465 465 HOH HOH . D 3 HOH A 166 466 466 HOH HOH . D 3 HOH A 167 467 467 HOH HOH . D 3 HOH A 168 468 468 HOH HOH . D 3 HOH A 169 469 469 HOH HOH . D 3 HOH A 170 470 470 HOH HOH . D 3 HOH A 171 471 471 HOH HOH . D 3 HOH A 172 472 472 HOH HOH . D 3 HOH A 173 473 473 HOH HOH . D 3 HOH A 174 474 474 HOH HOH . D 3 HOH A 175 475 475 HOH HOH . D 3 HOH A 176 476 476 HOH HOH . D 3 HOH A 177 477 477 HOH HOH . D 3 HOH A 178 478 478 HOH HOH . D 3 HOH A 179 479 479 HOH HOH . D 3 HOH A 180 480 480 HOH HOH . D 3 HOH A 181 481 481 HOH HOH . D 3 HOH A 182 482 482 HOH HOH . D 3 HOH A 183 483 483 HOH HOH . D 3 HOH A 184 484 484 HOH HOH . D 3 HOH A 185 485 485 HOH HOH . D 3 HOH A 186 486 486 HOH HOH . D 3 HOH A 187 487 487 HOH HOH . D 3 HOH A 188 488 488 HOH HOH . D 3 HOH A 189 489 489 HOH HOH . D 3 HOH A 190 490 490 HOH HOH . D 3 HOH A 191 491 491 HOH HOH . D 3 HOH A 192 492 492 HOH HOH . D 3 HOH A 193 493 493 HOH HOH . D 3 HOH A 194 494 494 HOH HOH . D 3 HOH A 195 495 495 HOH HOH . D 3 HOH A 196 496 496 HOH HOH . D 3 HOH A 197 497 497 HOH HOH . D 3 HOH A 198 498 498 HOH HOH . D 3 HOH A 199 499 499 HOH HOH . D 3 HOH A 200 500 500 HOH HOH . D 3 HOH A 201 501 501 HOH HOH . D 3 HOH A 202 502 502 HOH HOH . D 3 HOH A 203 503 503 HOH HOH . D 3 HOH A 204 504 504 HOH HOH . D 3 HOH A 205 505 505 HOH HOH . D 3 HOH A 206 506 506 HOH HOH . D 3 HOH A 207 507 507 HOH HOH . D 3 HOH A 208 508 508 HOH HOH . D 3 HOH A 209 509 509 HOH HOH . D 3 HOH A 210 510 510 HOH HOH . D 3 HOH A 211 511 511 HOH HOH . D 3 HOH A 212 512 512 HOH HOH . D 3 HOH A 213 513 513 HOH HOH . D 3 HOH A 214 514 514 HOH HOH . D 3 HOH A 215 515 515 HOH HOH . D 3 HOH A 216 516 516 HOH HOH . D 3 HOH A 217 517 517 HOH HOH . D 3 HOH A 218 518 518 HOH HOH . D 3 HOH A 219 519 519 HOH HOH . D 3 HOH A 220 520 520 HOH HOH . D 3 HOH A 221 521 521 HOH HOH . D 3 HOH A 222 522 522 HOH HOH . D 3 HOH A 223 523 523 HOH HOH . D 3 HOH A 224 524 524 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O11 72V . . . B 2 -38.466 13.963 -9.991 0.8 18.61 ? O11 72V 201 A 1 HETATM 2 C C8 72V . . . B 2 -37.712 13.762 -10.955 0.8 23.57 ? C8 72V 201 A 1 HETATM 3 C C9 72V . . . B 2 -37.252 12.509 -11.364 0.8 23.77 ? C9 72V 201 A 1 HETATM 4 O O12 72V . . . B 2 -38.175 11.455 -11.311 0.8 19.99 ? O12 72V 201 A 1 HETATM 5 C C1 72V . . . B 2 -36.576 12.742 -12.589 0.8 22.89 ? C1 72V 201 A 1 HETATM 6 C C2 72V . . . B 2 -36.099 11.888 -13.535 0.8 23.68 ? C2 72V 201 A 1 HETATM 7 C C3 72V . . . B 2 -35.473 12.397 -14.689 0.8 23.05 ? C3 72V 201 A 1 HETATM 8 C C4 72V . . . B 2 -35.345 13.777 -14.793 0.8 25.21 ? C4 72V 201 A 1 HETATM 9 C C5 72V . . . B 2 -35.878 14.616 -13.803 0.8 24.48 ? C5 72V 201 A 1 HETATM 10 C C6 72V . . . B 2 -36.459 14.093 -12.711 0.8 24.97 ? C6 72V 201 A 1 HETATM 11 N N7 72V . . . B 2 -37.065 14.685 -11.687 0.8 22.61 ? N7 72V 201 A 1 HETATM 12 C C10 72V . . . B 2 -37.178 16.185 -11.563 0.8 22.5 ? C10 72V 201 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #