data_6AFI # _model_server_result.job_id MI2xNY7y14BhFGpCfOFPdg _model_server_result.datetime_utc '2024-11-14 17:59:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6afi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6AFI # _exptl.entry_id 6AFI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.184 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-ethylindole-2,3-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6AFI _cell.length_a 75.39 _cell.length_b 75.39 _cell.length_c 75.75 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AFI _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -25.25 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 106 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 106 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C9 _struct_conn.ptnr2_label_comp_id 73D _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 73D _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.989 _struct_conn.pdbx_value_order sing # _chem_comp.formula 'C10 H9 N O2' _chem_comp.formula_weight 175.184 _chem_comp.id 73D _chem_comp.mon_nstd_flag . _chem_comp.name 1-ethylindole-2,3-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C3 73D doub 1 n y C4 C5 73D sing 2 n y C3 C2 73D sing 3 n y C5 C6 73D doub 4 n y C2 C1 73D doub 5 n y C6 C1 73D sing 6 n y C6 N7 73D sing 7 n n C1 C9 73D sing 8 n n N7 C10 73D sing 9 n n N7 C8 73D sing 10 n n C10 C11 73D sing 11 n n C9 O12 73D doub 12 n n C9 C8 73D sing 13 n n C8 O11 73D doub 14 n n C2 H3 73D sing 15 n n C3 H4 73D sing 16 n n C4 H5 73D sing 17 n n C5 H6 73D sing 18 n n C10 H7 73D sing 19 n n C10 H8 73D sing 20 n n C11 H9 73D sing 21 n n C11 H10 73D sing 22 n n C11 H11 73D sing 23 n n # _atom_sites.entry_id 6AFI _atom_sites.fract_transf_matrix[1][1] 0.013264 _atom_sites.fract_transf_matrix[1][2] 0.007658 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015316 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013201 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 73D A 1 201 201 73D 73D . C 3 CL A 1 202 202 CL CL . D 4 HOH A 1 301 301 HOH HOH . D 4 HOH A 2 302 302 HOH HOH . D 4 HOH A 3 303 303 HOH HOH . D 4 HOH A 4 304 304 HOH HOH . D 4 HOH A 5 305 305 HOH HOH . D 4 HOH A 6 306 306 HOH HOH . D 4 HOH A 7 307 307 HOH HOH . D 4 HOH A 8 308 308 HOH HOH . D 4 HOH A 9 309 309 HOH HOH . D 4 HOH A 10 310 310 HOH HOH . D 4 HOH A 11 311 311 HOH HOH . D 4 HOH A 12 312 312 HOH HOH . D 4 HOH A 13 313 313 HOH HOH . D 4 HOH A 14 314 314 HOH HOH . D 4 HOH A 15 315 315 HOH HOH . D 4 HOH A 16 316 316 HOH HOH . D 4 HOH A 17 317 317 HOH HOH . D 4 HOH A 18 318 318 HOH HOH . D 4 HOH A 19 319 319 HOH HOH . D 4 HOH A 20 320 320 HOH HOH . D 4 HOH A 21 321 321 HOH HOH . D 4 HOH A 22 322 322 HOH HOH . D 4 HOH A 23 323 323 HOH HOH . D 4 HOH A 24 324 324 HOH HOH . D 4 HOH A 25 325 325 HOH HOH . D 4 HOH A 26 326 326 HOH HOH . D 4 HOH A 27 327 327 HOH HOH . D 4 HOH A 28 328 328 HOH HOH . D 4 HOH A 29 329 329 HOH HOH . D 4 HOH A 30 330 330 HOH HOH . D 4 HOH A 31 331 331 HOH HOH . D 4 HOH A 32 332 332 HOH HOH . D 4 HOH A 33 333 333 HOH HOH . D 4 HOH A 34 334 334 HOH HOH . D 4 HOH A 35 335 335 HOH HOH . D 4 HOH A 36 336 336 HOH HOH . D 4 HOH A 37 337 337 HOH HOH . D 4 HOH A 38 338 338 HOH HOH . D 4 HOH A 39 339 339 HOH HOH . D 4 HOH A 40 340 340 HOH HOH . D 4 HOH A 41 341 341 HOH HOH . D 4 HOH A 42 342 342 HOH HOH . D 4 HOH A 43 343 343 HOH HOH . D 4 HOH A 44 344 344 HOH HOH . D 4 HOH A 45 345 345 HOH HOH . D 4 HOH A 46 346 346 HOH HOH . D 4 HOH A 47 347 347 HOH HOH . D 4 HOH A 48 348 348 HOH HOH . D 4 HOH A 49 349 349 HOH HOH . D 4 HOH A 50 350 350 HOH HOH . D 4 HOH A 51 351 351 HOH HOH . D 4 HOH A 52 352 352 HOH HOH . D 4 HOH A 53 353 353 HOH HOH . D 4 HOH A 54 354 355 HOH HOH . D 4 HOH A 55 355 356 HOH HOH . D 4 HOH A 56 356 357 HOH HOH . D 4 HOH A 57 357 358 HOH HOH . D 4 HOH A 58 358 359 HOH HOH . D 4 HOH A 59 359 360 HOH HOH . D 4 HOH A 60 360 361 HOH HOH . D 4 HOH A 61 361 362 HOH HOH . D 4 HOH A 62 362 363 HOH HOH . D 4 HOH A 63 363 364 HOH HOH . D 4 HOH A 64 364 365 HOH HOH . D 4 HOH A 65 365 366 HOH HOH . D 4 HOH A 66 366 367 HOH HOH . D 4 HOH A 67 367 368 HOH HOH . D 4 HOH A 68 368 369 HOH HOH . D 4 HOH A 69 369 370 HOH HOH . D 4 HOH A 70 370 371 HOH HOH . D 4 HOH A 71 371 372 HOH HOH . D 4 HOH A 72 372 373 HOH HOH . D 4 HOH A 73 373 374 HOH HOH . D 4 HOH A 74 374 375 HOH HOH . D 4 HOH A 75 375 376 HOH HOH . D 4 HOH A 76 376 377 HOH HOH . D 4 HOH A 77 377 378 HOH HOH . D 4 HOH A 78 378 379 HOH HOH . D 4 HOH A 79 379 354 HOH HOH . D 4 HOH A 80 380 380 HOH HOH . D 4 HOH A 81 381 381 HOH HOH . D 4 HOH A 82 382 382 HOH HOH . D 4 HOH A 83 383 383 HOH HOH . D 4 HOH A 84 384 384 HOH HOH . D 4 HOH A 85 385 385 HOH HOH . D 4 HOH A 86 386 386 HOH HOH . D 4 HOH A 87 387 387 HOH HOH . D 4 HOH A 88 388 388 HOH HOH . D 4 HOH A 89 389 389 HOH HOH . D 4 HOH A 90 390 390 HOH HOH . D 4 HOH A 91 391 391 HOH HOH . D 4 HOH A 92 392 392 HOH HOH . D 4 HOH A 93 393 393 HOH HOH . D 4 HOH A 94 394 394 HOH HOH . D 4 HOH A 95 395 395 HOH HOH . D 4 HOH A 96 396 396 HOH HOH . D 4 HOH A 97 397 397 HOH HOH . D 4 HOH A 98 398 398 HOH HOH . D 4 HOH A 99 399 399 HOH HOH . D 4 HOH A 100 400 400 HOH HOH . D 4 HOH A 101 401 401 HOH HOH . D 4 HOH A 102 402 402 HOH HOH . D 4 HOH A 103 403 403 HOH HOH . D 4 HOH A 104 404 404 HOH HOH . D 4 HOH A 105 405 405 HOH HOH . D 4 HOH A 106 406 406 HOH HOH . D 4 HOH A 107 407 407 HOH HOH . D 4 HOH A 108 408 408 HOH HOH . D 4 HOH A 109 409 409 HOH HOH . D 4 HOH A 110 410 410 HOH HOH . D 4 HOH A 111 411 411 HOH HOH . D 4 HOH A 112 412 412 HOH HOH . D 4 HOH A 113 413 413 HOH HOH . D 4 HOH A 114 414 414 HOH HOH . D 4 HOH A 115 415 415 HOH HOH . D 4 HOH A 116 416 416 HOH HOH . D 4 HOH A 117 417 417 HOH HOH . D 4 HOH A 118 418 418 HOH HOH . D 4 HOH A 119 419 419 HOH HOH . D 4 HOH A 120 420 420 HOH HOH . D 4 HOH A 121 421 421 HOH HOH . D 4 HOH A 122 422 422 HOH HOH . D 4 HOH A 123 423 423 HOH HOH . D 4 HOH A 124 424 424 HOH HOH . D 4 HOH A 125 425 425 HOH HOH . D 4 HOH A 126 426 426 HOH HOH . D 4 HOH A 127 427 427 HOH HOH . D 4 HOH A 128 428 428 HOH HOH . D 4 HOH A 129 429 429 HOH HOH . D 4 HOH A 130 430 430 HOH HOH . D 4 HOH A 131 431 431 HOH HOH . D 4 HOH A 132 432 432 HOH HOH . D 4 HOH A 133 433 433 HOH HOH . D 4 HOH A 134 434 434 HOH HOH . D 4 HOH A 135 435 435 HOH HOH . D 4 HOH A 136 436 436 HOH HOH . D 4 HOH A 137 437 437 HOH HOH . D 4 HOH A 138 438 438 HOH HOH . D 4 HOH A 139 439 439 HOH HOH . D 4 HOH A 140 440 440 HOH HOH . D 4 HOH A 141 441 441 HOH HOH . D 4 HOH A 142 442 442 HOH HOH . D 4 HOH A 143 443 443 HOH HOH . D 4 HOH A 144 444 444 HOH HOH . D 4 HOH A 145 445 445 HOH HOH . D 4 HOH A 146 446 446 HOH HOH . D 4 HOH A 147 447 447 HOH HOH . D 4 HOH A 148 448 448 HOH HOH . D 4 HOH A 149 449 449 HOH HOH . D 4 HOH A 150 450 450 HOH HOH . D 4 HOH A 151 451 451 HOH HOH . D 4 HOH A 152 452 452 HOH HOH . D 4 HOH A 153 453 453 HOH HOH . D 4 HOH A 154 454 454 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O11 73D . . . B 2 -38.691 13.858 -10.124 1 23.2 ? O11 73D 201 A 1 HETATM 2 C C8 73D . . . B 2 -38.001 13.664 -11.137 1 26.79 ? C8 73D 201 A 1 HETATM 3 C C9 73D . . . B 2 -37.437 12.426 -11.52 1 26.37 ? C9 73D 201 A 1 HETATM 4 O O12 73D . . . B 2 -38.293 11.291 -11.474 1 26.07 ? O12 73D 201 A 1 HETATM 5 C C1 73D . . . B 2 -36.797 12.681 -12.757 1 28.05 ? C1 73D 201 A 1 HETATM 6 C C2 73D . . . B 2 -36.214 11.864 -13.663 1 26.95 ? C2 73D 201 A 1 HETATM 7 C C3 73D . . . B 2 -35.582 12.384 -14.799 1 26.67 ? C3 73D 201 A 1 HETATM 8 C C4 73D . . . B 2 -35.589 13.767 -14.949 1 30.59 ? C4 73D 201 A 1 HETATM 9 C C5 73D . . . B 2 -36.204 14.577 -13.977 1 28.88 ? C5 73D 201 A 1 HETATM 10 C C6 73D . . . B 2 -36.768 14.041 -12.896 1 25.68 ? C6 73D 201 A 1 HETATM 11 N N7 73D . . . B 2 -37.447 14.62 -11.891 1 25.22 ? N7 73D 201 A 1 HETATM 12 C C10 73D . . . B 2 -37.777 16.019 -11.769 1 22.97 ? C10 73D 201 A 1 HETATM 13 C C11 73D . . . B 2 -36.528 16.708 -11.226 1 22.32 ? C11 73D 201 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #