data_6AG3 # _model_server_result.job_id HKVGYAUySHc57GwWigGizg _model_server_result.datetime_utc '2024-12-05 13:05:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ag3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6AG3 # _exptl.entry_id 6AG3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 333.306 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,5-bis(azanyl)-N-carbamimidoyl-6-(2,4-dimethoxypyrimidin-5-yl)pyrazine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6AG3 _cell.length_a 120.892 _cell.length_b 120.892 _cell.length_c 42.268 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AG3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 31 U CYS 42 1_555 A SG CYS 47 U CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf2 A SG CYS 39 U CYS 50 1_555 A SG CYS 110 U CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? disulf ? disulf3 A SG CYS 135 U CYS 136 1_555 A SG CYS 204 U CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf4 A SG CYS 167 U CYS 168 1_555 A SG CYS 183 U CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf5 A SG CYS 194 U CYS 191 1_555 A SG CYS 222 U CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? # _chem_comp.formula 'C12 H15 N9 O3' _chem_comp.formula_weight 333.306 _chem_comp.id 9XC _chem_comp.mon_nstd_flag . _chem_comp.name 3,5-bis(azanyl)-N-carbamimidoyl-6-(2,4-dimethoxypyrimidin-5-yl)pyrazine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C11 9XC doub 1 n n N9 C9 9XC sing 2 n n N7 C12 9XC doub 3 n n C11 N6 9XC sing 4 n n C11 C8 9XC sing 5 n n C9 C8 9XC doub 6 n y C9 N4 9XC sing 7 n y C12 N6 9XC sing 8 n n C12 N8 9XC sing 9 n n C8 N3 9XC sing 10 n y N4 C10 9XC doub 11 n y N3 C1 9XC doub 12 n y C10 C1 9XC sing 13 n y C10 N5 9XC sing 14 n n C1 C2 9XC sing 15 n n O2 C7 9XC sing 16 n n O2 C5 9XC sing 17 n n C2 C5 9XC doub 18 n y C2 C3 9XC sing 19 n y C5 N2 9XC sing 20 n y C3 N1 9XC doub 21 n y N2 C4 9XC doub 22 n y N1 C4 9XC sing 23 n y C4 O1 9XC sing 24 n n O1 C6 9XC sing 25 n n C3 H1 9XC sing 26 n n C6 H2 9XC sing 27 n n C6 H3 9XC sing 28 n n C6 H4 9XC sing 29 n n N8 H5 9XC sing 30 n n N8 H6 9XC sing 31 n n N6 H7 9XC sing 32 n n N7 H8 9XC sing 33 n n N9 H9 9XC sing 34 n n N9 H10 9XC sing 35 n n N5 H11 9XC sing 36 n n N5 H12 9XC sing 37 n n C7 H13 9XC sing 38 n n C7 H14 9XC sing 39 n n C7 H15 9XC sing 40 n n # _atom_sites.entry_id 6AG3 _atom_sites.fract_transf_matrix[1][1] 0.008272 _atom_sites.fract_transf_matrix[1][2] 0.004776 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009552 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023659 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9XC U 1 301 301 9XC 9XC . C 3 HOH U 1 401 401 HOH HOH . C 3 HOH U 2 402 402 HOH HOH . C 3 HOH U 3 403 403 HOH HOH . C 3 HOH U 4 404 404 HOH HOH . C 3 HOH U 5 405 405 HOH HOH . C 3 HOH U 6 406 406 HOH HOH . C 3 HOH U 7 407 407 HOH HOH . C 3 HOH U 8 408 409 HOH HOH . C 3 HOH U 9 409 410 HOH HOH . C 3 HOH U 10 410 411 HOH HOH . C 3 HOH U 11 411 412 HOH HOH . C 3 HOH U 12 412 413 HOH HOH . C 3 HOH U 13 413 408 HOH HOH . C 3 HOH U 14 414 414 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 9XC . . . B 2 -28.525 -17.417 2.974 1 102.16 ? N1 9XC 301 U 1 HETATM 2 C C2 9XC . . . B 2 -28.471 -16.532 0.748 1 101.7 ? C2 9XC 301 U 1 HETATM 3 C C3 9XC . . . B 2 -28.316 -17.598 1.647 1 104.6 ? C3 9XC 301 U 1 HETATM 4 C C4 9XC . . . B 2 -28.897 -16.203 3.479 1 103.63 ? C4 9XC 301 U 1 HETATM 5 C C5 9XC . . . B 2 -28.848 -15.293 1.284 1 95.53 ? C5 9XC 301 U 1 HETATM 6 C C6 9XC . . . B 2 -28.076 -16.227 5.805 1 104.21 ? C6 9XC 301 U 1 HETATM 7 N N8 9XC . . . B 2 -32.324 -20.66 -2.565 1 64.81 ? N8 9XC 301 U 1 HETATM 8 C C9 9XC . . . B 2 -27.789 -16.978 -3.459 1 77.46 ? C9 9XC 301 U 1 HETATM 9 C C10 9XC . . . B 2 -27.091 -16.147 -1.375 1 85.69 ? C10 9XC 301 U 1 HETATM 10 C C11 9XC . . . B 2 -29.926 -18.332 -3.601 1 69.97 ? C11 9XC 301 U 1 HETATM 11 C C12 9XC . . . B 2 -31.675 -19.942 -3.374 1 70.41 ? C12 9XC 301 U 1 HETATM 12 O O3 9XC . . . B 2 -29.985 -18.178 -4.796 1 61.94 ? O3 9XC 301 U 1 HETATM 13 N N6 9XC . . . B 2 -30.706 -19.165 -2.899 1 70.47 ? N6 9XC 301 U 1 HETATM 14 N N7 9XC . . . B 2 -31.966 -19.95 -4.673 1 72.12 ? N7 9XC 301 U 1 HETATM 15 C C8 9XC . . . B 2 -28.903 -17.548 -2.84 1 78.22 ? C8 9XC 301 U 1 HETATM 16 N N3 9XC . . . B 2 -29.103 -17.384 -1.497 1 85.8 ? N3 9XC 301 U 1 HETATM 17 N N9 9XC . . . B 2 -27.518 -17.089 -4.78 1 80.64 ? N9 9XC 301 U 1 HETATM 18 N N4 9XC . . . B 2 -26.908 -16.3 -2.708 1 79.42 ? N4 9XC 301 U 1 HETATM 19 N N5 9XC . . . B 2 -26.135 -15.432 -0.733 1 88.55 ? N5 9XC 301 U 1 HETATM 20 C C1 9XC . . . B 2 -28.221 -16.693 -0.734 1 93.52 ? C1 9XC 301 U 1 HETATM 21 O O2 9XC . . . B 2 -28.985 -14.211 0.459 1 89.52 ? O2 9XC 301 U 1 HETATM 22 C C7 9XC . . . B 2 -28.423 -12.951 0.846 1 90.35 ? C7 9XC 301 U 1 HETATM 23 N N2 9XC . . . B 2 -29.055 -15.148 2.628 1 97.31 ? N2 9XC 301 U 1 HETATM 24 O O1 9XC . . . B 2 -29.115 -16.044 4.835 1 106.75 ? O1 9XC 301 U 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #