data_6AG8 # _model_server_result.job_id 8EIeViitbahgQzPRgr9q9A _model_server_result.datetime_utc '2024-10-20 00:56:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ag8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 6AG8 # _exptl.entry_id 6AG8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6AG8 _cell.length_a 62.104 _cell.length_b 62.104 _cell.length_c 81.128 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AG8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 143 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1,2,4 B,D,F 2 1,3,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -31.052 53.783642 0 3 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -62.104 0 0 5 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 334 n n C C2 TRS sing 335 n n C C3 TRS sing 336 n n C N TRS sing 337 n n C1 O1 TRS sing 338 n n C1 H11 TRS sing 339 n n C1 H12 TRS sing 340 n n C2 O2 TRS sing 341 n n C2 H21 TRS sing 342 n n C2 H22 TRS sing 343 n n C3 O3 TRS sing 344 n n C3 H31 TRS sing 345 n n C3 H32 TRS sing 346 n n N HN1 TRS sing 347 n n N HN2 TRS sing 348 n n N HN3 TRS sing 349 n n O1 HO1 TRS sing 350 n n O2 HO2 TRS sing 351 n n O3 HO3 TRS sing 352 n n # _atom_sites.entry_id 6AG8 _atom_sites.fract_transf_matrix[1][1] 0.016102 _atom_sites.fract_transf_matrix[1][2] 0.009297 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018593 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012326 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TRS C 1 201 201 TRS TRS . D 2 TRS A 1 201 201 TRS TRS . E 3 HOH C 1 301 111 HOH HOH . E 3 HOH C 2 302 266 HOH HOH . E 3 HOH C 3 303 94 HOH HOH . E 3 HOH C 4 304 153 HOH HOH . E 3 HOH C 5 305 133 HOH HOH . E 3 HOH C 6 306 138 HOH HOH . E 3 HOH C 7 307 236 HOH HOH . E 3 HOH C 8 308 3 HOH HOH . E 3 HOH C 9 309 135 HOH HOH . E 3 HOH C 10 310 171 HOH HOH . E 3 HOH C 11 311 118 HOH HOH . E 3 HOH C 12 312 147 HOH HOH . E 3 HOH C 13 313 129 HOH HOH . E 3 HOH C 14 314 48 HOH HOH . E 3 HOH C 15 315 178 HOH HOH . E 3 HOH C 16 316 247 HOH HOH . E 3 HOH C 17 317 214 HOH HOH . E 3 HOH C 18 318 90 HOH HOH . E 3 HOH C 19 319 21 HOH HOH . E 3 HOH C 20 320 257 HOH HOH . E 3 HOH C 21 321 232 HOH HOH . E 3 HOH C 22 322 66 HOH HOH . E 3 HOH C 23 323 62 HOH HOH . E 3 HOH C 24 324 16 HOH HOH . E 3 HOH C 25 325 73 HOH HOH . E 3 HOH C 26 326 39 HOH HOH . E 3 HOH C 27 327 202 HOH HOH . E 3 HOH C 28 328 4 HOH HOH . E 3 HOH C 29 329 142 HOH HOH . E 3 HOH C 30 330 109 HOH HOH . E 3 HOH C 31 331 255 HOH HOH . E 3 HOH C 32 332 70 HOH HOH . E 3 HOH C 33 333 83 HOH HOH . E 3 HOH C 34 334 45 HOH HOH . E 3 HOH C 35 335 273 HOH HOH . E 3 HOH C 36 336 243 HOH HOH . E 3 HOH C 37 337 187 HOH HOH . E 3 HOH C 38 338 107 HOH HOH . E 3 HOH C 39 339 18 HOH HOH . E 3 HOH C 40 340 116 HOH HOH . E 3 HOH C 41 341 139 HOH HOH . E 3 HOH C 42 342 100 HOH HOH . E 3 HOH C 43 343 175 HOH HOH . E 3 HOH C 44 344 35 HOH HOH . E 3 HOH C 45 345 120 HOH HOH . E 3 HOH C 46 346 226 HOH HOH . E 3 HOH C 47 347 12 HOH HOH . E 3 HOH C 48 348 174 HOH HOH . E 3 HOH C 49 349 103 HOH HOH . E 3 HOH C 50 350 97 HOH HOH . E 3 HOH C 51 351 84 HOH HOH . E 3 HOH C 52 352 181 HOH HOH . E 3 HOH C 53 353 110 HOH HOH . E 3 HOH C 54 354 241 HOH HOH . E 3 HOH C 55 355 159 HOH HOH . E 3 HOH C 56 356 167 HOH HOH . E 3 HOH C 57 357 256 HOH HOH . E 3 HOH C 58 358 258 HOH HOH . E 3 HOH C 59 359 194 HOH HOH . E 3 HOH C 60 360 57 HOH HOH . E 3 HOH C 61 361 231 HOH HOH . E 3 HOH C 62 362 64 HOH HOH . E 3 HOH C 63 363 33 HOH HOH . E 3 HOH C 64 364 5 HOH HOH . E 3 HOH C 65 365 25 HOH HOH . E 3 HOH C 66 366 230 HOH HOH . E 3 HOH C 67 367 30 HOH HOH . E 3 HOH C 68 368 37 HOH HOH . E 3 HOH C 69 369 17 HOH HOH . E 3 HOH C 70 370 229 HOH HOH . E 3 HOH C 71 371 46 HOH HOH . E 3 HOH C 72 372 19 HOH HOH . E 3 HOH C 73 373 86 HOH HOH . E 3 HOH C 74 374 249 HOH HOH . E 3 HOH C 75 375 144 HOH HOH . E 3 HOH C 76 376 121 HOH HOH . E 3 HOH C 77 377 223 HOH HOH . E 3 HOH C 78 378 215 HOH HOH . E 3 HOH C 79 379 148 HOH HOH . E 3 HOH C 80 380 124 HOH HOH . E 3 HOH C 81 381 216 HOH HOH . E 3 HOH C 82 382 85 HOH HOH . E 3 HOH C 83 383 186 HOH HOH . E 3 HOH C 84 384 168 HOH HOH . E 3 HOH C 85 385 92 HOH HOH . E 3 HOH C 86 386 206 HOH HOH . E 3 HOH C 87 387 23 HOH HOH . E 3 HOH C 88 388 10 HOH HOH . E 3 HOH C 89 389 74 HOH HOH . E 3 HOH C 90 390 160 HOH HOH . E 3 HOH C 91 391 201 HOH HOH . E 3 HOH C 92 392 41 HOH HOH . E 3 HOH C 93 393 15 HOH HOH . E 3 HOH C 94 394 43 HOH HOH . E 3 HOH C 95 395 286 HOH HOH . E 3 HOH C 96 396 294 HOH HOH . E 3 HOH C 97 397 93 HOH HOH . E 3 HOH C 98 398 188 HOH HOH . E 3 HOH C 99 399 108 HOH HOH . E 3 HOH C 100 400 122 HOH HOH . E 3 HOH C 101 401 180 HOH HOH . E 3 HOH C 102 402 40 HOH HOH . E 3 HOH C 103 403 20 HOH HOH . E 3 HOH C 104 404 196 HOH HOH . E 3 HOH C 105 405 80 HOH HOH . E 3 HOH C 106 406 78 HOH HOH . E 3 HOH C 107 407 47 HOH HOH . E 3 HOH C 108 408 191 HOH HOH . E 3 HOH C 109 409 244 HOH HOH . E 3 HOH C 110 410 75 HOH HOH . E 3 HOH C 111 411 228 HOH HOH . E 3 HOH C 112 412 210 HOH HOH . E 3 HOH C 113 413 279 HOH HOH . E 3 HOH C 114 414 271 HOH HOH . E 3 HOH C 115 415 113 HOH HOH . E 3 HOH C 116 416 190 HOH HOH . E 3 HOH C 117 417 69 HOH HOH . E 3 HOH C 118 418 262 HOH HOH . E 3 HOH C 119 419 260 HOH HOH . E 3 HOH C 120 420 252 HOH HOH . E 3 HOH C 121 421 156 HOH HOH . E 3 HOH C 122 422 91 HOH HOH . E 3 HOH C 123 423 240 HOH HOH . E 3 HOH C 124 424 185 HOH HOH . E 3 HOH C 125 425 239 HOH HOH . E 3 HOH C 126 426 149 HOH HOH . E 3 HOH C 127 427 281 HOH HOH . E 3 HOH C 128 428 290 HOH HOH . E 3 HOH C 129 429 284 HOH HOH . E 3 HOH C 130 430 217 HOH HOH . E 3 HOH C 131 431 165 HOH HOH . E 3 HOH C 132 432 274 HOH HOH . E 3 HOH C 133 433 296 HOH HOH . E 3 HOH C 134 434 123 HOH HOH . E 3 HOH C 135 435 173 HOH HOH . E 3 HOH C 136 436 208 HOH HOH . E 3 HOH C 137 437 270 HOH HOH . E 3 HOH C 138 438 300 HOH HOH . E 3 HOH C 139 439 127 HOH HOH . E 3 HOH C 140 440 157 HOH HOH . E 3 HOH C 141 441 170 HOH HOH . E 3 HOH C 142 442 297 HOH HOH . E 3 HOH C 143 443 264 HOH HOH . E 3 HOH C 144 444 140 HOH HOH . E 3 HOH C 145 445 246 HOH HOH . E 3 HOH C 146 446 197 HOH HOH . E 3 HOH C 147 447 261 HOH HOH . E 3 HOH C 148 448 275 HOH HOH . F 3 HOH A 1 301 49 HOH HOH . F 3 HOH A 2 302 154 HOH HOH . F 3 HOH A 3 303 237 HOH HOH . F 3 HOH A 4 304 263 HOH HOH . F 3 HOH A 5 305 87 HOH HOH . F 3 HOH A 6 306 7 HOH HOH . F 3 HOH A 7 307 76 HOH HOH . F 3 HOH A 8 308 99 HOH HOH . F 3 HOH A 9 309 143 HOH HOH . F 3 HOH A 10 310 42 HOH HOH . F 3 HOH A 11 311 183 HOH HOH . F 3 HOH A 12 312 134 HOH HOH . F 3 HOH A 13 313 131 HOH HOH . F 3 HOH A 14 314 77 HOH HOH . F 3 HOH A 15 315 176 HOH HOH . F 3 HOH A 16 316 89 HOH HOH . F 3 HOH A 17 317 60 HOH HOH . F 3 HOH A 18 318 253 HOH HOH . F 3 HOH A 19 319 34 HOH HOH . F 3 HOH A 20 320 117 HOH HOH . F 3 HOH A 21 321 119 HOH HOH . F 3 HOH A 22 322 212 HOH HOH . F 3 HOH A 23 323 114 HOH HOH . F 3 HOH A 24 324 44 HOH HOH . F 3 HOH A 25 325 150 HOH HOH . F 3 HOH A 26 326 59 HOH HOH . F 3 HOH A 27 327 14 HOH HOH . F 3 HOH A 28 328 82 HOH HOH . F 3 HOH A 29 329 179 HOH HOH . F 3 HOH A 30 330 219 HOH HOH . F 3 HOH A 31 331 53 HOH HOH . F 3 HOH A 32 332 96 HOH HOH . F 3 HOH A 33 333 254 HOH HOH . F 3 HOH A 34 334 251 HOH HOH . F 3 HOH A 35 335 72 HOH HOH . F 3 HOH A 36 336 6 HOH HOH . F 3 HOH A 37 337 285 HOH HOH . F 3 HOH A 38 338 248 HOH HOH . F 3 HOH A 39 339 27 HOH HOH . F 3 HOH A 40 340 2 HOH HOH . F 3 HOH A 41 341 115 HOH HOH . F 3 HOH A 42 342 164 HOH HOH . F 3 HOH A 43 343 130 HOH HOH . F 3 HOH A 44 344 104 HOH HOH . F 3 HOH A 45 345 161 HOH HOH . F 3 HOH A 46 346 269 HOH HOH . F 3 HOH A 47 347 265 HOH HOH . F 3 HOH A 48 348 128 HOH HOH . F 3 HOH A 49 349 222 HOH HOH . F 3 HOH A 50 350 233 HOH HOH . F 3 HOH A 51 351 200 HOH HOH . F 3 HOH A 52 352 205 HOH HOH . F 3 HOH A 53 353 95 HOH HOH . F 3 HOH A 54 354 242 HOH HOH . F 3 HOH A 55 355 26 HOH HOH . F 3 HOH A 56 356 132 HOH HOH . F 3 HOH A 57 357 169 HOH HOH . F 3 HOH A 58 358 101 HOH HOH . F 3 HOH A 59 359 125 HOH HOH . F 3 HOH A 60 360 61 HOH HOH . F 3 HOH A 61 361 189 HOH HOH . F 3 HOH A 62 362 155 HOH HOH . F 3 HOH A 63 363 24 HOH HOH . F 3 HOH A 64 364 126 HOH HOH . F 3 HOH A 65 365 9 HOH HOH . F 3 HOH A 66 366 36 HOH HOH . F 3 HOH A 67 367 52 HOH HOH . F 3 HOH A 68 368 1 HOH HOH . F 3 HOH A 69 369 224 HOH HOH . F 3 HOH A 70 370 22 HOH HOH . F 3 HOH A 71 371 291 HOH HOH . F 3 HOH A 72 372 54 HOH HOH . F 3 HOH A 73 373 199 HOH HOH . F 3 HOH A 74 374 81 HOH HOH . F 3 HOH A 75 375 235 HOH HOH . F 3 HOH A 76 376 8 HOH HOH . F 3 HOH A 77 377 71 HOH HOH . F 3 HOH A 78 378 112 HOH HOH . F 3 HOH A 79 379 163 HOH HOH . F 3 HOH A 80 380 55 HOH HOH . F 3 HOH A 81 381 166 HOH HOH . F 3 HOH A 82 382 280 HOH HOH . F 3 HOH A 83 383 145 HOH HOH . F 3 HOH A 84 384 195 HOH HOH . F 3 HOH A 85 385 11 HOH HOH . F 3 HOH A 86 386 29 HOH HOH . F 3 HOH A 87 387 198 HOH HOH . F 3 HOH A 88 388 56 HOH HOH . F 3 HOH A 89 389 172 HOH HOH . F 3 HOH A 90 390 50 HOH HOH . F 3 HOH A 91 391 98 HOH HOH . F 3 HOH A 92 392 225 HOH HOH . F 3 HOH A 93 393 106 HOH HOH . F 3 HOH A 94 394 268 HOH HOH . F 3 HOH A 95 395 182 HOH HOH . F 3 HOH A 96 396 102 HOH HOH . F 3 HOH A 97 397 220 HOH HOH . F 3 HOH A 98 398 13 HOH HOH . F 3 HOH A 99 399 221 HOH HOH . F 3 HOH A 100 400 58 HOH HOH . F 3 HOH A 101 401 277 HOH HOH . F 3 HOH A 102 402 32 HOH HOH . F 3 HOH A 103 403 88 HOH HOH . F 3 HOH A 104 404 282 HOH HOH . F 3 HOH A 105 405 67 HOH HOH . F 3 HOH A 106 406 68 HOH HOH . F 3 HOH A 107 407 137 HOH HOH . F 3 HOH A 108 408 192 HOH HOH . F 3 HOH A 109 409 28 HOH HOH . F 3 HOH A 110 410 162 HOH HOH . F 3 HOH A 111 411 193 HOH HOH . F 3 HOH A 112 412 63 HOH HOH . F 3 HOH A 113 413 79 HOH HOH . F 3 HOH A 114 414 278 HOH HOH . F 3 HOH A 115 415 65 HOH HOH . F 3 HOH A 116 416 213 HOH HOH . F 3 HOH A 117 417 234 HOH HOH . F 3 HOH A 118 418 211 HOH HOH . F 3 HOH A 119 419 204 HOH HOH . F 3 HOH A 120 420 288 HOH HOH . F 3 HOH A 121 421 259 HOH HOH . F 3 HOH A 122 422 51 HOH HOH . F 3 HOH A 123 423 267 HOH HOH . F 3 HOH A 124 424 298 HOH HOH . F 3 HOH A 125 425 209 HOH HOH . F 3 HOH A 126 426 238 HOH HOH . F 3 HOH A 127 427 151 HOH HOH . F 3 HOH A 128 428 207 HOH HOH . F 3 HOH A 129 429 141 HOH HOH . F 3 HOH A 130 430 293 HOH HOH . F 3 HOH A 131 431 105 HOH HOH . F 3 HOH A 132 432 250 HOH HOH . F 3 HOH A 133 433 245 HOH HOH . F 3 HOH A 134 434 302 HOH HOH . F 3 HOH A 135 435 276 HOH HOH . F 3 HOH A 136 436 136 HOH HOH . F 3 HOH A 137 437 177 HOH HOH . F 3 HOH A 138 438 295 HOH HOH . F 3 HOH A 139 439 303 HOH HOH . F 3 HOH A 140 440 301 HOH HOH . F 3 HOH A 141 441 146 HOH HOH . F 3 HOH A 142 442 184 HOH HOH . F 3 HOH A 143 443 299 HOH HOH . F 3 HOH A 144 444 158 HOH HOH . F 3 HOH A 145 445 272 HOH HOH . F 3 HOH A 146 446 292 HOH HOH . F 3 HOH A 147 447 218 HOH HOH . F 3 HOH A 148 448 203 HOH HOH . F 3 HOH A 149 449 287 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . D 2 -7.958 15.431 40.836 1 15.03 ? C TRS 201 A 1 HETATM 2 C C1 TRS . . . D 2 -7.393 15.322 39.46 1 15.74 ? C1 TRS 201 A 1 HETATM 3 C C2 TRS . . . D 2 -9.472 15.47 40.946 1 15.53 ? C2 TRS 201 A 1 HETATM 4 C C3 TRS . . . D 2 -7.271 14.582 41.852 1 15.82 ? C3 TRS 201 A 1 HETATM 5 N N TRS . . . D 2 -7.61 16.847 41.28 1 16.72 ? N TRS 201 A 1 HETATM 6 O O1 TRS . . . D 2 -6.029 15.755 39.33 1 15.85 ? O1 TRS 201 A 1 HETATM 7 O O2 TRS . . . D 2 -9.921 15.349 42.275 1 15.19 ? O2 TRS 201 A 1 HETATM 8 O O3 TRS . . . D 2 -7.543 13.244 41.495 1 13.47 ? O3 TRS 201 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #