data_6AGF # _model_server_result.job_id 9ZxH7wx_2gWFdz9qmvXtfQ _model_server_result.datetime_utc '2024-11-22 12:16:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6agf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1914}' # _entry.id 6AGF # _exptl.entry_id 6AGF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 544.805 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG A 1901 NAG 3 n C NAG 2 C 2 NAG A 1902 NAG 3 n C BMA 3 C 3 BMA A 1903 BMA 4 n D NAG 1 D 1 NAG A 1904 NAG 4 n D NAG 2 D 2 NAG A 1905 NAG 4 n E NAG 1 E 1 NAG A 1906 NAG 4 n E NAG 2 E 2 NAG A 1907 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 323 A CYS 280 1_555 A SG CYS 403 A CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf2 A SG CYS 412 A CYS 369 1_555 A SG CYS 418 A CYS 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? disulf ? disulf3 A SG CYS 774 A CYS 731 1_555 A SG CYS 780 A CYS 737 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 1232 A CYS 1189 1_555 A SG CYS 1252 A CYS 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 A SG CYS 1596 A CYS 1553 1_555 A SG CYS 1611 A CYS 1568 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? disulf ? disulf6 B SG CYS 21 B CYS 21 1_555 B SG CYS 43 B CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf7 B SG CYS 40 B CYS 40 1_555 B SG CYS 121 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 A ND2 ASN 405 A ASN 362 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.475 ? covale ? covale2 A ND2 ASN 1248 A ASN 1205 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale3 B ND2 ASN 110 B ASN 110 1_555 M C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale4 B ND2 ASN 114 B ASN 114 1_555 N C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale6 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale7 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale8 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? # _chem_comp.formula 'C34 H56 O5' _chem_comp.formula_weight 544.805 _chem_comp.id 9Z9 _chem_comp.mon_nstd_flag . _chem_comp.name (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O25 C26 9Z9 sing 125 n n O25 C24 9Z9 sing 126 n n C50 O49 9Z9 sing 127 n n O49 C48 9Z9 sing 128 n n C24 C23 9Z9 sing 129 n n C48 C23 9Z9 sing 130 n n C23 C22 9Z9 sing 131 n n C22 C21 9Z9 sing 132 n n C21 O20 9Z9 sing 133 n n O20 C17 9Z9 sing 134 n n C17 C18 9Z9 sing 135 n n C17 C16 9Z9 sing 136 n n C18 C19 9Z9 sing 137 n n C16 C13 9Z9 sing 138 n n C19 C11 9Z9 sing 139 n n C13 C11 9Z9 sing 140 n n C13 C14 9Z9 doub 141 n n C11 C12 9Z9 sing 142 n n C11 C08 9Z9 sing 143 n n C14 C15 9Z9 sing 144 n n C08 C09 9Z9 sing 145 n n C08 C07 9Z9 sing 146 n n C15 C07 9Z9 sing 147 n n C09 C10 9Z9 sing 148 n n C07 C06 9Z9 sing 149 n n C10 C02 9Z9 sing 150 n n C06 C02 9Z9 sing 151 n n C06 C05 9Z9 sing 152 n n C02 C01 9Z9 sing 153 n n C02 C03 9Z9 sing 154 n n C05 C04 9Z9 sing 155 n n C03 C04 9Z9 sing 156 n n C03 C74 9Z9 sing 157 n n C04 O72 9Z9 sing 158 n n C74 C75 9Z9 sing 159 n n C74 C73 9Z9 sing 160 n n O72 C73 9Z9 sing 161 n n C73 O80 9Z9 sing 162 n n C73 C76 9Z9 sing 163 n n O80 C79 9Z9 sing 164 n n C76 C77 9Z9 sing 165 n n C79 C78 9Z9 sing 166 n n C77 C78 9Z9 sing 167 n n C78 C81 9Z9 sing 168 n n C01 H1 9Z9 sing 169 n n C01 H2 9Z9 sing 170 n n C01 H3 9Z9 sing 171 n n C03 H4 9Z9 sing 172 n n C04 H5 9Z9 sing 173 n n C05 H6 9Z9 sing 174 n n C05 H7 9Z9 sing 175 n n C06 H8 9Z9 sing 176 n n C07 H9 9Z9 sing 177 n n C08 H10 9Z9 sing 178 n n C09 H11 9Z9 sing 179 n n C09 H12 9Z9 sing 180 n n C10 H13 9Z9 sing 181 n n C10 H14 9Z9 sing 182 n n C12 H15 9Z9 sing 183 n n C12 H16 9Z9 sing 184 n n C12 H17 9Z9 sing 185 n n C14 H18 9Z9 sing 186 n n C15 H19 9Z9 sing 187 n n C15 H20 9Z9 sing 188 n n C16 H21 9Z9 sing 189 n n C16 H22 9Z9 sing 190 n n C17 H23 9Z9 sing 191 n n C18 H24 9Z9 sing 192 n n C18 H25 9Z9 sing 193 n n C19 H26 9Z9 sing 194 n n C19 H27 9Z9 sing 195 n n C21 H28 9Z9 sing 196 n n C21 H29 9Z9 sing 197 n n C22 H30 9Z9 sing 198 n n C22 H31 9Z9 sing 199 n n C23 H32 9Z9 sing 200 n n C24 H33 9Z9 sing 201 n n C24 H34 9Z9 sing 202 n n C26 H35 9Z9 sing 203 n n C26 H36 9Z9 sing 204 n n C26 H37 9Z9 sing 205 n n C48 H38 9Z9 sing 206 n n C48 H39 9Z9 sing 207 n n C50 H40 9Z9 sing 208 n n C50 H41 9Z9 sing 209 n n C50 H42 9Z9 sing 210 n n C74 H43 9Z9 sing 211 n n C75 H44 9Z9 sing 212 n n C75 H45 9Z9 sing 213 n n C75 H46 9Z9 sing 214 n n C76 H47 9Z9 sing 215 n n C76 H48 9Z9 sing 216 n n C77 H49 9Z9 sing 217 n n C77 H50 9Z9 sing 218 n n C78 H51 9Z9 sing 219 n n C79 H52 9Z9 sing 220 n n C79 H53 9Z9 sing 221 n n C81 H54 9Z9 sing 222 n n C81 H55 9Z9 sing 223 n n C81 H56 9Z9 sing 224 n n # _atom_sites.entry_id 6AGF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 6OU A 1 1908 1 6OU LIG . G 5 6OU A 1 1909 2 6OU LIG . H 5 6OU A 1 1910 3 6OU LIG . I 5 6OU A 1 1911 4 6OU LIG . J 5 6OU A 1 1912 5 6OU LIG . K 5 6OU A 1 1913 6 6OU LIG . L 6 9Z9 A 1 1914 1 9Z9 GDN . M 7 NAG B 1 301 301 NAG NAG . N 7 NAG B 1 302 302 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 9Z9 . . . L 6 130.085 134.133 121.488 1 20 ? C01 9Z9 1914 A 1 HETATM 2 C C02 9Z9 . . . L 6 131.167 133.146 121.015 1 20 ? C02 9Z9 1914 A 1 HETATM 3 C C03 9Z9 . . . L 6 131.842 132.399 122.185 1 20 ? C03 9Z9 1914 A 1 HETATM 4 C C04 9Z9 . . . L 6 130.96 131.163 122.397 1 20 ? C04 9Z9 1914 A 1 HETATM 5 C C05 9Z9 . . . L 6 129.901 131.123 121.299 1 20 ? C05 9Z9 1914 A 1 HETATM 6 C C06 9Z9 . . . L 6 130.619 131.939 120.227 1 20 ? C06 9Z9 1914 A 1 HETATM 7 C C07 9Z9 . . . L 6 129.864 132.288 118.943 1 20 ? C07 9Z9 1914 A 1 HETATM 8 C C08 9Z9 . . . L 6 130.77 133.14 118.04 1 20 ? C08 9Z9 1914 A 1 HETATM 9 C C09 9Z9 . . . L 6 131.399 134.315 118.812 1 20 ? C09 9Z9 1914 A 1 HETATM 10 C C10 9Z9 . . . L 6 132.139 133.873 120.083 1 20 ? C10 9Z9 1914 A 1 HETATM 11 C C11 9Z9 . . . L 6 130.042 133.565 116.739 1 20 ? C11 9Z9 1914 A 1 HETATM 12 C C12 9Z9 . . . L 6 129.031 134.69 117.021 1 20 ? C12 9Z9 1914 A 1 HETATM 13 C C13 9Z9 . . . L 6 129.305 132.39 116.117 1 20 ? C13 9Z9 1914 A 1 HETATM 14 C C14 9Z9 . . . L 6 128.966 131.297 116.817 1 20 ? C14 9Z9 1914 A 1 HETATM 15 C C15 9Z9 . . . L 6 129.454 131.009 118.204 1 20 ? C15 9Z9 1914 A 1 HETATM 16 C C16 9Z9 . . . L 6 128.811 132.568 114.696 1 20 ? C16 9Z9 1914 A 1 HETATM 17 C C17 9Z9 . . . L 6 129.953 132.984 113.776 1 20 ? C17 9Z9 1914 A 1 HETATM 18 C C18 9Z9 . . . L 6 130.561 134.275 114.31 1 20 ? C18 9Z9 1914 A 1 HETATM 19 C C19 9Z9 . . . L 6 131.098 134.05 115.727 1 20 ? C19 9Z9 1914 A 1 HETATM 20 O O20 9Z9 . . . L 6 129.443 133.143 112.483 1 20 ? O20 9Z9 1914 A 1 HETATM 21 C C21 9Z9 . . . L 6 129.391 131.945 111.758 1 20 ? C21 9Z9 1914 A 1 HETATM 22 C C22 9Z9 . . . L 6 127.947 131.67 111.345 1 20 ? C22 9Z9 1914 A 1 HETATM 23 C C23 9Z9 . . . L 6 127.819 131.136 109.903 1 20 ? C23 9Z9 1914 A 1 HETATM 24 C C24 9Z9 . . . L 6 129.008 130.265 109.481 1 20 ? C24 9Z9 1914 A 1 HETATM 25 O O25 9Z9 . . . L 6 129.575 130.793 108.304 1 20 ? O25 9Z9 1914 A 1 HETATM 26 C C26 9Z9 . . . L 6 130.973 130.948 108.369 1 20 ? C26 9Z9 1914 A 1 HETATM 27 C C48 9Z9 . . . L 6 126.508 130.356 109.745 1 20 ? C48 9Z9 1914 A 1 HETATM 28 O O49 9Z9 . . . L 6 125.688 131.057 108.848 1 20 ? O49 9Z9 1914 A 1 HETATM 29 C C50 9Z9 . . . L 6 124.384 130.547 108.72 1 20 ? C50 9Z9 1914 A 1 HETATM 30 O O72 9Z9 . . . L 6 130.411 131.291 123.668 1 20 ? O72 9Z9 1914 A 1 HETATM 31 C C73 9Z9 . . . L 6 131.382 131.906 124.476 1 20 ? C73 9Z9 1914 A 1 HETATM 32 C C74 9Z9 . . . L 6 131.907 133.028 123.582 1 20 ? C74 9Z9 1914 A 1 HETATM 33 C C75 9Z9 . . . L 6 133.278 133.607 123.944 1 20 ? C75 9Z9 1914 A 1 HETATM 34 C C76 9Z9 . . . L 6 130.69 132.429 125.729 1 20 ? C76 9Z9 1914 A 1 HETATM 35 C C77 9Z9 . . . L 6 130.813 131.407 126.867 1 20 ? C77 9Z9 1914 A 1 HETATM 36 C C78 9Z9 . . . L 6 132.275 131.003 127.136 1 20 ? C78 9Z9 1914 A 1 HETATM 37 C C79 9Z9 . . . L 6 133.12 130.956 125.866 1 20 ? C79 9Z9 1914 A 1 HETATM 38 O O80 9Z9 . . . L 6 132.34 130.888 124.701 1 20 ? O80 9Z9 1914 A 1 HETATM 39 C C81 9Z9 . . . L 6 132.362 129.665 127.884 1 20 ? C81 9Z9 1914 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 39 #