data_6AGN # _model_server_result.job_id eneywEGAsCHwgcwaoaPwrQ _model_server_result.datetime_utc '2024-11-09 02:04:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6agn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":207}' # _entry.id 6AGN # _exptl.entry_id 6AGN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 132.159 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2Z)-3-phenylprop-2-enal _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6AGN _cell.length_a 78.751 _cell.length_b 78.751 _cell.length_c 37.1 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AGN _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A O SER 60 A SER 60 1_555 G NA NA . A NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc2 A O CYS 64 A CYS 64 1_555 G NA NA . A NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc3 A OG SER 72 A SER 72 1_555 G NA NA . A NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc4 A O ARG 73 A ARG 73 1_555 G NA NA . A NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc5 G NA NA . A NA 206 1_555 J O HOH . A HOH 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc6 G NA NA . A NA 206 1_555 J O HOH . A HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? # _chem_comp.formula 'C9 H8 O' _chem_comp.formula_weight 132.159 _chem_comp.id 9Y3 _chem_comp.mon_nstd_flag . _chem_comp.name (2Z)-3-phenylprop-2-enal _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Cis-Cinnamaldehyde # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C9 9Y3 sing 1 n n C8 C7 9Y3 doub 2 z n C9 O10 9Y3 doub 3 n n C7 C5 9Y3 sing 4 n n C6 C5 9Y3 doub 5 n y C6 C1 9Y3 sing 6 n y C5 C4 9Y3 sing 7 n y C1 C2 9Y3 doub 8 n y C4 C3 9Y3 doub 9 n y C2 C3 9Y3 sing 10 n y C1 H1 9Y3 sing 11 n n C2 H2 9Y3 sing 12 n n C3 H3 9Y3 sing 13 n n C4 H4 9Y3 sing 14 n n C6 H5 9Y3 sing 15 n n C7 H6 9Y3 sing 16 n n C8 H7 9Y3 sing 17 n n C9 H8 9Y3 sing 18 n n # _atom_sites.entry_id 6AGN _atom_sites.fract_transf_matrix[1][1] 0.012698 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012698 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026954 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 201 1 EDO EDO . C 2 EDO A 1 202 2 EDO EDO . D 3 CL A 1 203 1 CL CL . E 3 CL A 1 204 2 CL CL . F 3 CL A 1 205 3 CL CL . G 4 NA A 1 206 1 NA NA . H 5 9Y3 A 1 207 1 9Y3 Cin . I 6 9Y6 A 1 208 2 9Y6 Cin . J 7 HOH A 1 301 121 HOH HOH . J 7 HOH A 2 302 220 HOH HOH . J 7 HOH A 3 303 124 HOH HOH . J 7 HOH A 4 304 141 HOH HOH . J 7 HOH A 5 305 219 HOH HOH . J 7 HOH A 6 306 180 HOH HOH . J 7 HOH A 7 307 216 HOH HOH . J 7 HOH A 8 308 227 HOH HOH . J 7 HOH A 9 309 101 HOH HOH . J 7 HOH A 10 310 69 HOH HOH . J 7 HOH A 11 311 115 HOH HOH . J 7 HOH A 12 312 228 HOH HOH . J 7 HOH A 13 313 45 HOH HOH . J 7 HOH A 14 314 49 HOH HOH . J 7 HOH A 15 315 169 HOH HOH . J 7 HOH A 16 316 97 HOH HOH . J 7 HOH A 17 317 36 HOH HOH . J 7 HOH A 18 318 4 HOH HOH . J 7 HOH A 19 319 72 HOH HOH . J 7 HOH A 20 320 223 HOH HOH . J 7 HOH A 21 321 98 HOH HOH . J 7 HOH A 22 322 13 HOH HOH . J 7 HOH A 23 323 71 HOH HOH . J 7 HOH A 24 324 136 HOH HOH . J 7 HOH A 25 325 102 HOH HOH . J 7 HOH A 26 326 3 HOH HOH . J 7 HOH A 27 327 106 HOH HOH . J 7 HOH A 28 328 32 HOH HOH . J 7 HOH A 29 329 207 HOH HOH . J 7 HOH A 30 330 35 HOH HOH . J 7 HOH A 31 331 11 HOH HOH . J 7 HOH A 32 332 44 HOH HOH . J 7 HOH A 33 333 127 HOH HOH . J 7 HOH A 34 334 212 HOH HOH . J 7 HOH A 35 335 75 HOH HOH . J 7 HOH A 36 336 196 HOH HOH . J 7 HOH A 37 337 214 HOH HOH . J 7 HOH A 38 338 152 HOH HOH . J 7 HOH A 39 339 31 HOH HOH . J 7 HOH A 40 340 89 HOH HOH . J 7 HOH A 41 341 27 HOH HOH . J 7 HOH A 42 342 93 HOH HOH . J 7 HOH A 43 343 224 HOH HOH . J 7 HOH A 44 344 14 HOH HOH . J 7 HOH A 45 345 46 HOH HOH . J 7 HOH A 46 346 67 HOH HOH . J 7 HOH A 47 347 157 HOH HOH . J 7 HOH A 48 348 41 HOH HOH . J 7 HOH A 49 349 18 HOH HOH . J 7 HOH A 50 350 99 HOH HOH . J 7 HOH A 51 351 8 HOH HOH . J 7 HOH A 52 352 28 HOH HOH . J 7 HOH A 53 353 42 HOH HOH . J 7 HOH A 54 354 23 HOH HOH . J 7 HOH A 55 355 135 HOH HOH . J 7 HOH A 56 356 221 HOH HOH . J 7 HOH A 57 357 112 HOH HOH . J 7 HOH A 58 358 33 HOH HOH . J 7 HOH A 59 359 34 HOH HOH . J 7 HOH A 60 360 76 HOH HOH . J 7 HOH A 61 361 7 HOH HOH . J 7 HOH A 62 362 43 HOH HOH . J 7 HOH A 63 363 24 HOH HOH . J 7 HOH A 64 364 138 HOH HOH . J 7 HOH A 65 365 56 HOH HOH . J 7 HOH A 66 366 66 HOH HOH . J 7 HOH A 67 367 199 HOH HOH . J 7 HOH A 68 368 40 HOH HOH . J 7 HOH A 69 369 140 HOH HOH . J 7 HOH A 70 370 131 HOH HOH . J 7 HOH A 71 371 37 HOH HOH . J 7 HOH A 72 372 184 HOH HOH . J 7 HOH A 73 373 96 HOH HOH . J 7 HOH A 74 374 100 HOH HOH . J 7 HOH A 75 375 17 HOH HOH . J 7 HOH A 76 376 47 HOH HOH . J 7 HOH A 77 377 48 HOH HOH . J 7 HOH A 78 378 139 HOH HOH . J 7 HOH A 79 379 10 HOH HOH . J 7 HOH A 80 380 163 HOH HOH . J 7 HOH A 81 381 53 HOH HOH . J 7 HOH A 82 382 195 HOH HOH . J 7 HOH A 83 383 9 HOH HOH . J 7 HOH A 84 384 116 HOH HOH . J 7 HOH A 85 385 38 HOH HOH . J 7 HOH A 86 386 2 HOH HOH . J 7 HOH A 87 387 60 HOH HOH . J 7 HOH A 88 388 55 HOH HOH . J 7 HOH A 89 389 177 HOH HOH . J 7 HOH A 90 390 119 HOH HOH . J 7 HOH A 91 391 81 HOH HOH . J 7 HOH A 92 392 16 HOH HOH . J 7 HOH A 93 393 137 HOH HOH . J 7 HOH A 94 394 103 HOH HOH . J 7 HOH A 95 395 80 HOH HOH . J 7 HOH A 96 396 171 HOH HOH . J 7 HOH A 97 397 54 HOH HOH . J 7 HOH A 98 398 22 HOH HOH . J 7 HOH A 99 399 189 HOH HOH . J 7 HOH A 100 400 156 HOH HOH . J 7 HOH A 101 401 208 HOH HOH . J 7 HOH A 102 402 201 HOH HOH . J 7 HOH A 103 403 30 HOH HOH . J 7 HOH A 104 404 21 HOH HOH . J 7 HOH A 105 405 12 HOH HOH . J 7 HOH A 106 406 164 HOH HOH . J 7 HOH A 107 407 58 HOH HOH . J 7 HOH A 108 408 51 HOH HOH . J 7 HOH A 109 409 6 HOH HOH . J 7 HOH A 110 410 20 HOH HOH . J 7 HOH A 111 411 65 HOH HOH . J 7 HOH A 112 412 197 HOH HOH . J 7 HOH A 113 413 125 HOH HOH . J 7 HOH A 114 414 215 HOH HOH . J 7 HOH A 115 415 95 HOH HOH . J 7 HOH A 116 416 86 HOH HOH . J 7 HOH A 117 417 178 HOH HOH . J 7 HOH A 118 418 26 HOH HOH . J 7 HOH A 119 419 117 HOH HOH . J 7 HOH A 120 420 29 HOH HOH . J 7 HOH A 121 421 59 HOH HOH . J 7 HOH A 122 422 1 HOH HOH . J 7 HOH A 123 423 5 HOH HOH . J 7 HOH A 124 424 146 HOH HOH . J 7 HOH A 125 425 83 HOH HOH . J 7 HOH A 126 426 155 HOH HOH . J 7 HOH A 127 427 166 HOH HOH . J 7 HOH A 128 428 91 HOH HOH . J 7 HOH A 129 429 188 HOH HOH . J 7 HOH A 130 430 61 HOH HOH . J 7 HOH A 131 431 159 HOH HOH . J 7 HOH A 132 432 25 HOH HOH . J 7 HOH A 133 433 217 HOH HOH . J 7 HOH A 134 434 179 HOH HOH . J 7 HOH A 135 435 52 HOH HOH . J 7 HOH A 136 436 191 HOH HOH . J 7 HOH A 137 437 123 HOH HOH . J 7 HOH A 138 438 15 HOH HOH . J 7 HOH A 139 439 210 HOH HOH . J 7 HOH A 140 440 39 HOH HOH . J 7 HOH A 141 441 92 HOH HOH . J 7 HOH A 142 442 85 HOH HOH . J 7 HOH A 143 443 62 HOH HOH . J 7 HOH A 144 444 19 HOH HOH . J 7 HOH A 145 445 128 HOH HOH . J 7 HOH A 146 446 94 HOH HOH . J 7 HOH A 147 447 120 HOH HOH . J 7 HOH A 148 448 68 HOH HOH . J 7 HOH A 149 449 193 HOH HOH . J 7 HOH A 150 450 144 HOH HOH . J 7 HOH A 151 451 64 HOH HOH . J 7 HOH A 152 452 57 HOH HOH . J 7 HOH A 153 453 129 HOH HOH . J 7 HOH A 154 454 122 HOH HOH . J 7 HOH A 155 455 114 HOH HOH . J 7 HOH A 156 456 84 HOH HOH . J 7 HOH A 157 457 133 HOH HOH . J 7 HOH A 158 458 168 HOH HOH . J 7 HOH A 159 459 187 HOH HOH . J 7 HOH A 160 460 181 HOH HOH . J 7 HOH A 161 461 218 HOH HOH . J 7 HOH A 162 462 186 HOH HOH . J 7 HOH A 163 463 203 HOH HOH . J 7 HOH A 164 464 104 HOH HOH . J 7 HOH A 165 465 88 HOH HOH . J 7 HOH A 166 466 111 HOH HOH . J 7 HOH A 167 467 170 HOH HOH . J 7 HOH A 168 468 147 HOH HOH . J 7 HOH A 169 469 206 HOH HOH . J 7 HOH A 170 470 150 HOH HOH . J 7 HOH A 171 471 173 HOH HOH . J 7 HOH A 172 472 110 HOH HOH . J 7 HOH A 173 473 113 HOH HOH . J 7 HOH A 174 474 126 HOH HOH . J 7 HOH A 175 475 167 HOH HOH . J 7 HOH A 176 476 151 HOH HOH . J 7 HOH A 177 477 225 HOH HOH . J 7 HOH A 178 478 190 HOH HOH . J 7 HOH A 179 479 209 HOH HOH . J 7 HOH A 180 480 182 HOH HOH . J 7 HOH A 181 481 160 HOH HOH . J 7 HOH A 182 482 63 HOH HOH . J 7 HOH A 183 483 202 HOH HOH . J 7 HOH A 184 484 109 HOH HOH . J 7 HOH A 185 485 183 HOH HOH . J 7 HOH A 186 486 148 HOH HOH . J 7 HOH A 187 487 78 HOH HOH . J 7 HOH A 188 488 118 HOH HOH . J 7 HOH A 189 489 174 HOH HOH . J 7 HOH A 190 490 70 HOH HOH . J 7 HOH A 191 491 134 HOH HOH . J 7 HOH A 192 492 176 HOH HOH . J 7 HOH A 193 493 194 HOH HOH . J 7 HOH A 194 494 205 HOH HOH . J 7 HOH A 195 495 154 HOH HOH . J 7 HOH A 196 496 105 HOH HOH . J 7 HOH A 197 497 50 HOH HOH . J 7 HOH A 198 498 145 HOH HOH . J 7 HOH A 199 499 198 HOH HOH . J 7 HOH A 200 500 77 HOH HOH . J 7 HOH A 201 501 132 HOH HOH . J 7 HOH A 202 502 175 HOH HOH . J 7 HOH A 203 503 165 HOH HOH . J 7 HOH A 204 504 90 HOH HOH . J 7 HOH A 205 505 73 HOH HOH . J 7 HOH A 206 506 192 HOH HOH . J 7 HOH A 207 507 108 HOH HOH . J 7 HOH A 208 508 87 HOH HOH . J 7 HOH A 209 509 213 HOH HOH . J 7 HOH A 210 510 185 HOH HOH . J 7 HOH A 211 511 130 HOH HOH . J 7 HOH A 212 512 211 HOH HOH . J 7 HOH A 213 513 172 HOH HOH . J 7 HOH A 214 514 149 HOH HOH . J 7 HOH A 215 515 107 HOH HOH . J 7 HOH A 216 516 162 HOH HOH . J 7 HOH A 217 517 226 HOH HOH . J 7 HOH A 218 518 143 HOH HOH . J 7 HOH A 219 519 161 HOH HOH . J 7 HOH A 220 520 204 HOH HOH . J 7 HOH A 221 521 200 HOH HOH . J 7 HOH A 222 522 82 HOH HOH . J 7 HOH A 223 523 79 HOH HOH . J 7 HOH A 224 524 158 HOH HOH . J 7 HOH A 225 525 74 HOH HOH . J 7 HOH A 226 526 153 HOH HOH . J 7 HOH A 227 527 222 HOH HOH . J 7 HOH A 228 528 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 9Y3 . . . H 5 -29.448 -1.711 -24.54 1 53.84 ? C1 9Y3 207 A 1 HETATM 2 C C2 9Y3 . . . H 5 -29.854 -2.311 -23.42 1 51.11 ? C2 9Y3 207 A 1 HETATM 3 C C3 9Y3 . . . H 5 -29.241 -3.413 -23.104 1 45.5 ? C3 9Y3 207 A 1 HETATM 4 C C4 9Y3 . . . H 5 -28.27 -3.851 -23.868 1 47.08 ? C4 9Y3 207 A 1 HETATM 5 C C5 9Y3 . . . H 5 -27.901 -3.259 -24.989 1 50.01 ? C5 9Y3 207 A 1 HETATM 6 C C6 9Y3 . . . H 5 -28.545 -2.179 -25.426 1 57.83 ? C6 9Y3 207 A 1 HETATM 7 C C7 9Y3 . . . H 5 -27.012 -4.037 -25.788 1 48.42 ? C7 9Y3 207 A 1 HETATM 8 C C8 9Y3 . . . H 5 -27.45 -5.256 -26.198 1 44.07 ? C8 9Y3 207 A 1 HETATM 9 C C9 9Y3 . . . H 5 -28.8 -5.764 -25.916 1 37.41 ? C9 9Y3 207 A 1 HETATM 10 O O10 9Y3 . . . H 5 -29.276 -6.729 -25.536 1 33.7 ? O10 9Y3 207 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 10 #