data_6AH4 # _model_server_result.job_id p1yPfFcDp3fUJ2jIyQ_mzA _model_server_result.datetime_utc '2024-11-16 08:52:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ah4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":407}' # _entry.id 6AH4 # _exptl.entry_id 6AH4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6AH4 _cell.length_a 110.903 _cell.length_b 142.5 _cell.length_c 325.336 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AH4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 K N N ? 3 T N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n D GLC 1 D 1 GLC A 406 MAL 2 n D GLC 2 D 2 GLC A 406 MAL 2 n E GLC 1 E 1 GLC A 407 MAL 2 n E GLC 2 E 2 GLC A 407 MAL 2 n F GLC 1 F 1 GLC B 406 MAL 2 n F GLC 2 F 2 GLC B 406 MAL 2 n G GLC 1 G 1 GLC B 407 MAL 2 n G GLC 2 G 2 GLC B 407 MAL 2 n H GLC 1 H 1 GLC C 406 MAL 2 n H GLC 2 H 2 GLC C 406 MAL 2 n I GLC 1 I 1 GLC C 407 MAL 2 n I GLC 2 I 2 GLC C 407 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 106 A CYS 107 1_555 A SG CYS 152 A CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 A SG CYS 115 A CYS 116 1_555 A SG CYS 136 A CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 121 A CYS 122 1_555 A SG CYS 146 A CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf4 A SG CYS 202 A CYS 203 1_555 A SG CYS 212 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? disulf ? disulf5 A SG CYS 246 A CYS 247 1_555 A SG CYS 255 A CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf6 B SG CYS 106 B CYS 107 1_555 B SG CYS 152 B CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf7 B SG CYS 115 B CYS 116 1_555 B SG CYS 136 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 B SG CYS 121 B CYS 122 1_555 B SG CYS 146 B CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf9 B SG CYS 202 B CYS 203 1_555 B SG CYS 212 B CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf10 B SG CYS 246 B CYS 247 1_555 B SG CYS 255 B CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf11 C SG CYS 106 C CYS 107 1_555 C SG CYS 152 C CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf12 C SG CYS 115 C CYS 116 1_555 C SG CYS 136 C CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf13 C SG CYS 121 C CYS 122 1_555 C SG CYS 146 C CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf14 C SG CYS 202 C CYS 203 1_555 C SG CYS 212 C CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf15 C SG CYS 246 C CYS 247 1_555 C SG CYS 255 C CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 A ND2 ASN 169 A ASN 170 1_555 L C1 NAG . A NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale2 A ND2 ASN 193 A ASN 194 1_555 M C1 NAG . A NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale3 B ND2 ASN 169 B ASN 170 1_555 P C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale4 B ND2 ASN 193 B ASN 194 1_555 Q C1 NAG . B NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale5 B ND2 ASN 289 B ASN 290 1_555 R C1 NAG . B NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale6 C ND2 ASN 169 C ASN 170 1_555 V C1 NAG . C NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale7 C ND2 ASN 193 C ASN 194 1_555 W C1 NAG . C NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale8 C ND2 ASN 289 C ASN 290 1_555 X C1 NAG . C NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale9 D O4 GLC . D GLC 1 1_555 D C1 GLC . D GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 sing covale ? covale10 E O4 GLC . E GLC 1 1_555 E C1 GLC . E GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 sing covale ? covale11 F O4 GLC . F GLC 1 1_555 F C1 GLC . F GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 sing covale ? covale12 G O4 GLC . G GLC 1 1_555 G C1 GLC . G GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.408 sing covale ? covale13 H O4 GLC . H GLC 1 1_555 H C1 GLC . H GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 sing covale ? covale14 I O4 GLC . I GLC 1 1_555 I C1 GLC . I GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 sing metalc ? metalc1 A OD2 ASP 157 A ASP 158 1_555 O CA CA . A CA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc2 J O1G ATP . A ATP 401 1_555 U CA CA . B CA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.992 ? metalc ? metalc3 J O3G ATP . A ATP 401 1_555 U CA CA . B CA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? metalc ? metalc4 K O1G ATP . A ATP 402 1_555 O CA CA . A CA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc5 B OD2 ASP 157 B ASP 158 1_555 U CA CA . B CA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? metalc ? metalc6 T O3G ATP . B ATP 407 1_555 Z CA CA . C CA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.097 ? metalc ? metalc7 C OD2 ASP 157 C ASP 158 1_555 Z CA CA . C CA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 6AH4 _atom_sites.fract_transf_matrix[1][1] 0.009017 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007018 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003074 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 3 ATP A 1 401 401 ATP ATP . K 3 ATP A 1 402 401 ATP ATP . L 4 NAG A 1 403 402 NAG NAG . M 4 NAG A 1 404 403 NAG NAG . N 5 EDO A 1 407 408 EDO EDO . O 6 CA A 1 408 3 CA CA . P 4 NAG B 1 401 402 NAG NAG . Q 4 NAG B 1 402 403 NAG NAG . R 4 NAG B 1 403 404 NAG NAG . S 5 EDO B 1 406 408 EDO EDO . T 3 ATP B 1 407 401 ATP ATP . U 6 CA B 1 408 2 CA CA . V 4 NAG C 1 401 402 NAG NAG . W 4 NAG C 1 402 403 NAG NAG . X 4 NAG C 1 403 404 NAG NAG . Y 5 EDO C 1 406 408 EDO EDO . Z 6 CA C 1 407 1 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . T 3 213.822 60.668 348.263 1 168.27 ? PG ATP 407 B 1 HETATM 2 O O1G ATP . . . T 3 213.532 59.581 347.247 1 159.83 ? O1G ATP 407 B 1 HETATM 3 O O2G ATP . . . T 3 215.105 61.401 347.934 1 145.15 ? O2G ATP 407 B 1 HETATM 4 O O3G ATP . . . T 3 212.665 61.588 348.625 1 147.5 ? O3G ATP 407 B 1 HETATM 5 P PB ATP . . . T 3 213.021 59.277 350.661 1 151.44 ? PB ATP 407 B 1 HETATM 6 O O1B ATP . . . T 3 212.127 58.255 349.902 1 182.94 ? O1B ATP 407 B 1 HETATM 7 O O2B ATP . . . T 3 212.325 60.507 351.201 1 154 ? O2B ATP 407 B 1 HETATM 8 O O3B ATP . . . T 3 214.139 59.841 349.626 1 161.39 ? O3B ATP 407 B 1 HETATM 9 P PA ATP . . . T 3 215.446 58.413 352.267 1 158.52 ? PA ATP 407 B 1 HETATM 10 O O1A ATP . . . T 3 215.967 57.634 351.065 1 187.68 ? O1A ATP 407 B 1 HETATM 11 O O2A ATP . . . T 3 215.624 57.792 353.637 1 138.11 ? O2A ATP 407 B 1 HETATM 12 O O3A ATP . . . T 3 213.839 58.703 351.979 1 148.72 ? O3A ATP 407 B 1 HETATM 13 O O5' ATP . . . T 3 216.192 59.847 352.276 1 143.63 ? O5' ATP 407 B 1 HETATM 14 C C5' ATP . . . T 3 216.085 60.758 353.359 1 143.89 ? C5' ATP 407 B 1 HETATM 15 C C4' ATP . . . T 3 216.046 62.157 352.772 1 147.23 ? C4' ATP 407 B 1 HETATM 16 O O4' ATP . . . T 3 217.365 62.643 352.556 1 141 ? O4' ATP 407 B 1 HETATM 17 C C3' ATP . . . T 3 215.392 62.139 351.393 1 163.04 ? C3' ATP 407 B 1 HETATM 18 O O3' ATP . . . T 3 213.973 62.363 351.384 1 185.87 ? O3' ATP 407 B 1 HETATM 19 C C2' ATP . . . T 3 216.117 63.201 350.595 1 158.1 ? C2' ATP 407 B 1 HETATM 20 O O2' ATP . . . T 3 215.443 64.468 350.605 1 145.61 ? O2' ATP 407 B 1 HETATM 21 C C1' ATP . . . T 3 217.459 63.301 351.288 1 144.66 ? C1' ATP 407 B 1 HETATM 22 N N9 ATP . . . T 3 218.405 62.598 350.381 1 149.78 ? N9 ATP 407 B 1 HETATM 23 C C8 ATP . . . T 3 218.524 61.262 350.213 1 143.33 ? C8 ATP 407 B 1 HETATM 24 N N7 ATP . . . T 3 219.475 60.973 349.285 1 141.43 ? N7 ATP 407 B 1 HETATM 25 C C5 ATP . . . T 3 219.982 62.145 348.837 1 149.56 ? C5 ATP 407 B 1 HETATM 26 C C6 ATP . . . T 3 221.027 62.578 347.865 1 156.29 ? C6 ATP 407 B 1 HETATM 27 N N6 ATP . . . T 3 221.764 61.69 347.143 1 145.81 ? N6 ATP 407 B 1 HETATM 28 N N1 ATP . . . T 3 221.229 63.91 347.715 1 153.19 ? N1 ATP 407 B 1 HETATM 29 C C2 ATP . . . T 3 220.52 64.823 348.41 1 156.62 ? C2 ATP 407 B 1 HETATM 30 N N3 ATP . . . T 3 219.564 64.509 349.3 1 141.95 ? N3 ATP 407 B 1 HETATM 31 C C4 ATP . . . T 3 219.261 63.211 349.556 1 148.14 ? C4 ATP 407 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 40 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #