data_6AH4 # _model_server_result.job_id daHhYq2X4UjcOxUnRy6mxQ _model_server_result.datetime_utc '2024-11-16 08:25:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ah4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":408}' # _entry.id 6AH4 # _exptl.entry_id 6AH4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6AH4 _cell.length_a 110.903 _cell.length_b 142.5 _cell.length_c 325.336 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AH4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 O N N ? 6 U N N ? 6 Z N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n D GLC 1 D 1 GLC A 406 MAL 2 n D GLC 2 D 2 GLC A 406 MAL 2 n E GLC 1 E 1 GLC A 407 MAL 2 n E GLC 2 E 2 GLC A 407 MAL 2 n F GLC 1 F 1 GLC B 406 MAL 2 n F GLC 2 F 2 GLC B 406 MAL 2 n G GLC 1 G 1 GLC B 407 MAL 2 n G GLC 2 G 2 GLC B 407 MAL 2 n H GLC 1 H 1 GLC C 406 MAL 2 n H GLC 2 H 2 GLC C 406 MAL 2 n I GLC 1 I 1 GLC C 407 MAL 2 n I GLC 2 I 2 GLC C 407 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 106 A CYS 107 1_555 A SG CYS 152 A CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 A SG CYS 115 A CYS 116 1_555 A SG CYS 136 A CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 121 A CYS 122 1_555 A SG CYS 146 A CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf4 A SG CYS 202 A CYS 203 1_555 A SG CYS 212 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? disulf ? disulf5 A SG CYS 246 A CYS 247 1_555 A SG CYS 255 A CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf6 B SG CYS 106 B CYS 107 1_555 B SG CYS 152 B CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf7 B SG CYS 115 B CYS 116 1_555 B SG CYS 136 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 B SG CYS 121 B CYS 122 1_555 B SG CYS 146 B CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf9 B SG CYS 202 B CYS 203 1_555 B SG CYS 212 B CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf10 B SG CYS 246 B CYS 247 1_555 B SG CYS 255 B CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf11 C SG CYS 106 C CYS 107 1_555 C SG CYS 152 C CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf12 C SG CYS 115 C CYS 116 1_555 C SG CYS 136 C CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf13 C SG CYS 121 C CYS 122 1_555 C SG CYS 146 C CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf14 C SG CYS 202 C CYS 203 1_555 C SG CYS 212 C CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf15 C SG CYS 246 C CYS 247 1_555 C SG CYS 255 C CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 A ND2 ASN 169 A ASN 170 1_555 L C1 NAG . A NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale2 A ND2 ASN 193 A ASN 194 1_555 M C1 NAG . A NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale3 B ND2 ASN 169 B ASN 170 1_555 P C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale4 B ND2 ASN 193 B ASN 194 1_555 Q C1 NAG . B NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale5 B ND2 ASN 289 B ASN 290 1_555 R C1 NAG . B NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale6 C ND2 ASN 169 C ASN 170 1_555 V C1 NAG . C NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale7 C ND2 ASN 193 C ASN 194 1_555 W C1 NAG . C NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale8 C ND2 ASN 289 C ASN 290 1_555 X C1 NAG . C NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale9 D O4 GLC . D GLC 1 1_555 D C1 GLC . D GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 sing covale ? covale10 E O4 GLC . E GLC 1 1_555 E C1 GLC . E GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 sing covale ? covale11 F O4 GLC . F GLC 1 1_555 F C1 GLC . F GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 sing covale ? covale12 G O4 GLC . G GLC 1 1_555 G C1 GLC . G GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.408 sing covale ? covale13 H O4 GLC . H GLC 1 1_555 H C1 GLC . H GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 sing covale ? covale14 I O4 GLC . I GLC 1 1_555 I C1 GLC . I GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 sing metalc ? metalc1 A OD2 ASP 157 A ASP 158 1_555 O CA CA . A CA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc2 J O1G ATP . A ATP 401 1_555 U CA CA . B CA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.992 ? metalc ? metalc3 J O3G ATP . A ATP 401 1_555 U CA CA . B CA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? metalc ? metalc4 K O1G ATP . A ATP 402 1_555 O CA CA . A CA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc5 B OD2 ASP 157 B ASP 158 1_555 U CA CA . B CA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? metalc ? metalc6 T O3G ATP . B ATP 407 1_555 Z CA CA . C CA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.097 ? metalc ? metalc7 C OD2 ASP 157 C ASP 158 1_555 Z CA CA . C CA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6AH4 _atom_sites.fract_transf_matrix[1][1] 0.009017 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007018 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003074 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 3 ATP A 1 401 401 ATP ATP . K 3 ATP A 1 402 401 ATP ATP . L 4 NAG A 1 403 402 NAG NAG . M 4 NAG A 1 404 403 NAG NAG . N 5 EDO A 1 407 408 EDO EDO . O 6 CA A 1 408 3 CA CA . P 4 NAG B 1 401 402 NAG NAG . Q 4 NAG B 1 402 403 NAG NAG . R 4 NAG B 1 403 404 NAG NAG . S 5 EDO B 1 406 408 EDO EDO . T 3 ATP B 1 407 401 ATP ATP . U 6 CA B 1 408 2 CA CA . V 4 NAG C 1 401 402 NAG NAG . W 4 NAG C 1 402 403 NAG NAG . X 4 NAG C 1 403 404 NAG NAG . Y 5 EDO C 1 406 408 EDO EDO . Z 6 CA C 1 407 1 CA CA . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id U _atom_site.label_entity_id 6 _atom_site.Cartn_x 237.779 _atom_site.Cartn_y 42.883 _atom_site.Cartn_z 323.696 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 124.25 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 408 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 1 #