data_6AH5 # _model_server_result.job_id 95WOQGxUPAaYFgoRHLBslg _model_server_result.datetime_utc '2024-11-16 10:26:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ah5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":407}' # _entry.id 6AH5 # _exptl.entry_id 6AH5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6AH5 _cell.length_a 110.531 _cell.length_b 139.436 _cell.length_c 323.963 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AH5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 K N N ? 3 Q N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n D GLC 1 D 1 GLC A 406 MAL 2 n D GLC 2 D 2 GLC A 406 MAL 2 n E GLC 1 E 1 GLC A 407 MAL 2 n E GLC 2 E 2 GLC A 407 MAL 2 n F GLC 1 F 1 GLC C 406 MAL 2 n F GLC 2 F 2 GLC C 406 MAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 106 A CYS 107 1_555 A SG CYS 152 A CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf2 A SG CYS 115 A CYS 116 1_555 A SG CYS 136 A CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf3 A SG CYS 121 A CYS 122 1_555 A SG CYS 146 A CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf4 A SG CYS 202 A CYS 203 1_555 A SG CYS 212 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf5 A SG CYS 246 A CYS 247 1_555 A SG CYS 255 A CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf6 B SG CYS 106 B CYS 107 1_555 B SG CYS 152 B CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf7 B SG CYS 115 B CYS 116 1_555 B SG CYS 136 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 B SG CYS 121 B CYS 122 1_555 B SG CYS 146 B CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf9 B SG CYS 202 B CYS 203 1_555 B SG CYS 212 B CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf10 B SG CYS 246 B CYS 247 1_555 B SG CYS 255 B CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf11 C SG CYS 106 C CYS 107 1_555 C SG CYS 152 C CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf12 C SG CYS 115 C CYS 116 1_555 C SG CYS 136 C CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf13 C SG CYS 121 C CYS 122 1_555 C SG CYS 146 C CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf14 C SG CYS 202 C CYS 203 1_555 C SG CYS 212 C CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf15 C SG CYS 246 C CYS 247 1_555 C SG CYS 255 C CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A ND2 ASN 169 A ASN 170 1_555 H C1 NAG . A NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale2 A ND2 ASN 193 A ASN 194 1_555 I C1 NAG . A NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale3 B ND2 ASN 169 B ASN 170 1_555 M C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale4 B ND2 ASN 193 B ASN 194 1_555 N C1 NAG . B NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale5 B ND2 ASN 289 B ASN 290 1_555 O C1 NAG . B NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? covale ? covale6 C ND2 ASN 169 C ASN 170 1_555 S C1 NAG . C NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale7 C ND2 ASN 193 C ASN 194 1_555 T C1 NAG . C NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale8 C ND2 ASN 289 C ASN 290 1_555 U C1 NAG . C NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale9 D O4 GLC . D GLC 1 1_555 D C1 GLC . D GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 sing covale ? covale10 E O4 GLC . E GLC 1 1_555 E C1 GLC . E GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 sing covale ? covale11 F O4 GLC . F GLC 1 1_555 F C1 GLC . F GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 sing metalc ? metalc1 A OD2 ASP 157 A ASP 158 1_555 L MG MG . A MG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc2 G O1G ATP . A ATP 401 1_555 L MG MG . A MG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc3 K O1G ATP . A ATP 407 1_555 R MG MG . B MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc4 B OD2 ASP 157 B ASP 158 1_555 R MG MG . B MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc5 Q O3G ATP . B ATP 405 1_555 W MG MG . C MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc6 C OD2 ASP 157 C ASP 158 1_555 W MG MG . C MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 6AH5 _atom_sites.fract_transf_matrix[1][1] 0.009047 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007172 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003087 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 ATP A 1 401 401 ATP ATP . H 4 NAG A 1 402 402 NAG NAG . I 4 NAG A 1 403 403 NAG NAG . J 5 EDO A 1 406 408 EDO EDO . K 3 ATP A 1 407 401 ATP ATP . L 6 MG A 1 408 3 MG MG . M 4 NAG B 1 401 402 NAG NAG . N 4 NAG B 1 402 403 NAG NAG . O 4 NAG B 1 403 404 NAG NAG . P 5 EDO B 1 404 408 EDO EDO . Q 3 ATP B 1 405 401 ATP ATP . R 6 MG B 1 406 2 MG MG . S 4 NAG C 1 401 402 NAG NAG . T 4 NAG C 1 402 403 NAG NAG . U 4 NAG C 1 403 404 NAG NAG . V 5 EDO C 1 405 408 EDO EDO . W 6 MG C 1 406 1 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . K 3 236.57 41.295 325.644 1 198.17 ? PG ATP 407 A 1 HETATM 2 O O1G ATP . . . K 3 237.361 40.924 324.393 1 180.75 ? O1G ATP 407 A 1 HETATM 3 O O2G ATP . . . K 3 235.884 40.113 326.375 1 193.72 ? O2G ATP 407 A 1 HETATM 4 O O3G ATP . . . K 3 235.699 42.499 325.342 1 193.79 ? O3G ATP 407 A 1 HETATM 5 P PB ATP . . . K 3 237.692 43.534 327.056 1 168.53 ? PB ATP 407 A 1 HETATM 6 O O1B ATP . . . K 3 238.206 44.044 325.735 1 189.7 ? O1B ATP 407 A 1 HETATM 7 O O2B ATP . . . K 3 236.41 44.196 327.543 1 172.41 ? O2B ATP 407 A 1 HETATM 8 O O3B ATP . . . K 3 237.553 41.931 326.8 1 184.5 ? O3B ATP 407 A 1 HETATM 9 P PA ATP . . . K 3 238.667 43.1 329.663 1 169.33 ? PA ATP 407 A 1 HETATM 10 O O1A ATP . . . K 3 237.163 42.718 329.722 1 217.2 ? O1A ATP 407 A 1 HETATM 11 O O2A ATP . . . K 3 239.334 44.097 330.603 1 169.95 ? O2A ATP 407 A 1 HETATM 12 O O3A ATP . . . K 3 238.859 43.569 328.139 1 168.49 ? O3A ATP 407 A 1 HETATM 13 O O5' ATP . . . K 3 239.486 41.731 329.715 1 166.21 ? O5' ATP 407 A 1 HETATM 14 C C5' ATP . . . K 3 240.883 41.751 329.94 1 182.28 ? C5' ATP 407 A 1 HETATM 15 C C4' ATP . . . K 3 241.492 40.892 328.833 1 188.52 ? C4' ATP 407 A 1 HETATM 16 O O4' ATP . . . K 3 241.336 39.519 329.163 1 182.2 ? O4' ATP 407 A 1 HETATM 17 C C3' ATP . . . K 3 240.78 41.11 327.49 1 186.8 ? C3' ATP 407 A 1 HETATM 18 O O3' ATP . . . K 3 241.766 41.254 326.435 1 181.73 ? O3' ATP 407 A 1 HETATM 19 C C2' ATP . . . K 3 239.931 39.884 327.25 1 179.43 ? C2' ATP 407 A 1 HETATM 20 O O2' ATP . . . K 3 240.171 39.471 325.914 1 195.17 ? O2' ATP 407 A 1 HETATM 21 C C1' ATP . . . K 3 240.587 38.867 328.145 1 167.89 ? C1' ATP 407 A 1 HETATM 22 N N9 ATP . . . K 3 239.612 38.133 328.926 1 164.54 ? N9 ATP 407 A 1 HETATM 23 C C8 ATP . . . K 3 238.767 38.668 329.817 1 169.27 ? C8 ATP 407 A 1 HETATM 24 N N7 ATP . . . K 3 238.028 37.701 330.409 1 164.88 ? N7 ATP 407 A 1 HETATM 25 C C5 ATP . . . K 3 238.438 36.53 329.889 1 165.64 ? C5 ATP 407 A 1 HETATM 26 C C6 ATP . . . K 3 238.087 35.107 330.072 1 162.85 ? C6 ATP 407 A 1 HETATM 27 N N6 ATP . . . K 3 237.118 34.756 330.969 1 162.58 ? N6 ATP 407 A 1 HETATM 28 N N1 ATP . . . K 3 238.791 34.225 329.294 1 165.67 ? N1 ATP 407 A 1 HETATM 29 C C2 ATP . . . K 3 239.779 34.57 328.408 1 162.92 ? C2 ATP 407 A 1 HETATM 30 N N3 ATP . . . K 3 240.155 35.841 328.196 1 156.12 ? N3 ATP 407 A 1 HETATM 31 C C4 ATP . . . K 3 239.507 36.822 328.903 1 164.82 ? C4 ATP 407 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #