data_6AI7 # _model_server_result.job_id UHUHEBgdqDh7V-qpBCETSA _model_server_result.datetime_utc '2024-11-14 08:19:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ai7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6AI7 # _exptl.entry_id 6AI7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 474.359 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-deoxy-1-[(4aS)-4a-hydroxy-7,8-dimethyl-2,4-dioxo-3,4,4a,5-tetrahydrobenzo[g]pteridin-10(2H)-yl]-5-O-phosphono-D-ribitol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6AI7 _cell.length_a 138.576 _cell.length_b 138.576 _cell.length_c 107.889 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AI7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H23 N4 O10 P' _chem_comp.formula_weight 474.359 _chem_comp.id 9Q6 _chem_comp.mon_nstd_flag . _chem_comp.name 1-deoxy-1-[(4aS)-4a-hydroxy-7,8-dimethyl-2,4-dioxo-3,4,4a,5-tetrahydrobenzo[g]pteridin-10(2H)-yl]-5-O-phosphono-D-ribitol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAM CAL 9Q6 doub 1 n n OBD CAU 9Q6 sing 2 n n CAL NAN 9Q6 sing 3 n n CAL NAK 9Q6 sing 4 n n NAN CAO 9Q6 sing 5 n n NAK CAJ 9Q6 doub 6 n n OBE CAT 9Q6 sing 7 n n CAU CAT 9Q6 sing 8 n n CAU CAV 9Q6 sing 9 n n CAW CAV 9Q6 sing 10 n n CAW OAX 9Q6 sing 11 n n CAT CAS 9Q6 sing 12 n n CAV OBC 9Q6 sing 13 n n CAS NAI 9Q6 sing 14 n n OAX PAY 9Q6 sing 15 n n CAJ NAI 9Q6 sing 16 n n CAJ CAQ 9Q6 sing 17 n n CAO OAP 9Q6 doub 18 n n CAO CAQ 9Q6 sing 19 n n NAI CAE 9Q6 sing 20 n n OBB PAY 9Q6 doub 21 n n CAQ OBF 9Q6 sing 22 n n CAQ NAR 9Q6 sing 23 n n PAY OBA 9Q6 sing 24 n n PAY OAZ 9Q6 sing 25 n n CAE CAF 9Q6 sing 26 n y CAE CAD 9Q6 doub 27 n y NAR CAD 9Q6 sing 28 n n CAF CAG 9Q6 doub 29 n y CAD CAC 9Q6 sing 30 n y CAG CAH 9Q6 sing 31 n n CAG CAB 9Q6 sing 32 n y CAC CAB 9Q6 doub 33 n y CAB CAA 9Q6 sing 34 n n CAA H1 9Q6 sing 35 n n CAA H2 9Q6 sing 36 n n CAA H3 9Q6 sing 37 n n CAC H4 9Q6 sing 38 n n CAF H5 9Q6 sing 39 n n CAH H6 9Q6 sing 40 n n CAH H7 9Q6 sing 41 n n CAH H8 9Q6 sing 42 n n CAS H9 9Q6 sing 43 n n CAS H10 9Q6 sing 44 n n CAT H11 9Q6 sing 45 n n CAU H12 9Q6 sing 46 n n CAV H13 9Q6 sing 47 n n CAW H14 9Q6 sing 48 n n CAW H15 9Q6 sing 49 n n NAN H16 9Q6 sing 50 n n NAR H17 9Q6 sing 51 n n OAZ H18 9Q6 sing 52 n n OBA H19 9Q6 sing 53 n n OBC H20 9Q6 sing 54 n n OBD H21 9Q6 sing 55 n n OBE H22 9Q6 sing 56 n n OBF H23 9Q6 sing 57 n n # _atom_sites.entry_id 6AI7 _atom_sites.fract_transf_matrix[1][1] 0.007216 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007216 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009269 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9Q6 A 1 401 1 9Q6 DRG . C 3 HOH A 1 501 22 HOH HOH . C 3 HOH A 2 502 6 HOH HOH . C 3 HOH A 3 503 45 HOH HOH . C 3 HOH A 4 504 38 HOH HOH . C 3 HOH A 5 505 76 HOH HOH . C 3 HOH A 6 506 15 HOH HOH . C 3 HOH A 7 507 69 HOH HOH . C 3 HOH A 8 508 43 HOH HOH . C 3 HOH A 9 509 58 HOH HOH . C 3 HOH A 10 510 44 HOH HOH . C 3 HOH A 11 511 5 HOH HOH . C 3 HOH A 12 512 57 HOH HOH . C 3 HOH A 13 513 72 HOH HOH . C 3 HOH A 14 514 60 HOH HOH . C 3 HOH A 15 515 29 HOH HOH . C 3 HOH A 16 516 70 HOH HOH . C 3 HOH A 17 517 17 HOH HOH . C 3 HOH A 18 518 35 HOH HOH . C 3 HOH A 19 519 16 HOH HOH . C 3 HOH A 20 520 23 HOH HOH . C 3 HOH A 21 521 26 HOH HOH . C 3 HOH A 22 522 32 HOH HOH . C 3 HOH A 23 523 54 HOH HOH . C 3 HOH A 24 524 3 HOH HOH . C 3 HOH A 25 525 36 HOH HOH . C 3 HOH A 26 526 8 HOH HOH . C 3 HOH A 27 527 41 HOH HOH . C 3 HOH A 28 528 68 HOH HOH . C 3 HOH A 29 529 11 HOH HOH . C 3 HOH A 30 530 27 HOH HOH . C 3 HOH A 31 531 4 HOH HOH . C 3 HOH A 32 532 25 HOH HOH . C 3 HOH A 33 533 12 HOH HOH . C 3 HOH A 34 534 66 HOH HOH . C 3 HOH A 35 535 37 HOH HOH . C 3 HOH A 36 536 40 HOH HOH . C 3 HOH A 37 537 24 HOH HOH . C 3 HOH A 38 538 39 HOH HOH . C 3 HOH A 39 539 61 HOH HOH . C 3 HOH A 40 540 47 HOH HOH . C 3 HOH A 41 541 9 HOH HOH . C 3 HOH A 42 542 2 HOH HOH . C 3 HOH A 43 543 46 HOH HOH . C 3 HOH A 44 544 62 HOH HOH . C 3 HOH A 45 545 64 HOH HOH . C 3 HOH A 46 546 30 HOH HOH . C 3 HOH A 47 547 50 HOH HOH . C 3 HOH A 48 548 19 HOH HOH . C 3 HOH A 49 549 14 HOH HOH . C 3 HOH A 50 550 52 HOH HOH . C 3 HOH A 51 551 7 HOH HOH . C 3 HOH A 52 552 49 HOH HOH . C 3 HOH A 53 553 10 HOH HOH . C 3 HOH A 54 554 33 HOH HOH . C 3 HOH A 55 555 20 HOH HOH . C 3 HOH A 56 556 71 HOH HOH . C 3 HOH A 57 557 67 HOH HOH . C 3 HOH A 58 558 59 HOH HOH . C 3 HOH A 59 559 42 HOH HOH . C 3 HOH A 60 560 51 HOH HOH . C 3 HOH A 61 561 18 HOH HOH . C 3 HOH A 62 562 21 HOH HOH . C 3 HOH A 63 563 1 HOH HOH . C 3 HOH A 64 564 55 HOH HOH . C 3 HOH A 65 565 28 HOH HOH . C 3 HOH A 66 566 13 HOH HOH . C 3 HOH A 67 567 34 HOH HOH . C 3 HOH A 68 568 65 HOH HOH . C 3 HOH A 69 569 31 HOH HOH . C 3 HOH A 70 570 75 HOH HOH . C 3 HOH A 71 571 53 HOH HOH . C 3 HOH A 72 572 56 HOH HOH . C 3 HOH A 73 573 74 HOH HOH . C 3 HOH A 74 574 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 9Q6 . . . B 2 27.946 -8.745 29.639 1 55.08 ? CAA 9Q6 401 A 1 HETATM 2 C CAB 9Q6 . . . B 2 27.984 -8.778 28.231 1 51.36 ? CAB 9Q6 401 A 1 HETATM 3 C CAC 9Q6 . . . B 2 29.198 -8.525 27.573 1 46.62 ? CAC 9Q6 401 A 1 HETATM 4 C CAD 9Q6 . . . B 2 29.233 -8.549 26.181 1 46.29 ? CAD 9Q6 401 A 1 HETATM 5 C CAE 9Q6 . . . B 2 28.102 -8.821 25.383 1 41.53 ? CAE 9Q6 401 A 1 HETATM 6 C CAF 9Q6 . . . B 2 26.931 -9.106 26.083 1 43.65 ? CAF 9Q6 401 A 1 HETATM 7 C CAG 9Q6 . . . B 2 26.836 -9.076 27.467 1 45.75 ? CAG 9Q6 401 A 1 HETATM 8 C CAH 9Q6 . . . B 2 25.563 -9.363 27.998 1 49.39 ? CAH 9Q6 401 A 1 HETATM 9 C CAJ 9Q6 . . . B 2 29.371 -8.908 23.385 1 45.4 ? CAJ 9Q6 401 A 1 HETATM 10 C CAL 9Q6 . . . B 2 30.657 -8.997 21.401 1 52.74 ? CAL 9Q6 401 A 1 HETATM 11 C CAO 9Q6 . . . B 2 31.731 -8.894 23.681 1 54.36 ? CAO 9Q6 401 A 1 HETATM 12 C CAQ 9Q6 . . . B 2 30.505 -8.557 24.172 1 48.1 ? CAQ 9Q6 401 A 1 HETATM 13 C CAS 9Q6 . . . B 2 26.924 -8.97 23.105 1 28.8 ? CAS 9Q6 401 A 1 HETATM 14 C CAT 9Q6 . . . B 2 26.583 -10.427 22.802 1 27.4 ? CAT 9Q6 401 A 1 HETATM 15 C CAU 9Q6 . . . B 2 25.196 -10.582 22.101 1 31.45 ? CAU 9Q6 401 A 1 HETATM 16 C CAV 9Q6 . . . B 2 24.016 -10.193 23.004 1 37.39 ? CAV 9Q6 401 A 1 HETATM 17 C CAW 9Q6 . . . B 2 22.846 -11.085 22.592 1 36.54 ? CAW 9Q6 401 A 1 HETATM 18 N NAI 9Q6 . . . B 2 28.164 -8.867 23.992 1 38.68 ? NAI 9Q6 401 A 1 HETATM 19 N NAK 9Q6 . . . B 2 29.444 -8.976 22.012 1 40.52 ? NAK 9Q6 401 A 1 HETATM 20 N NAN 9Q6 . . . B 2 31.823 -8.951 22.256 1 53.78 ? NAN 9Q6 401 A 1 HETATM 21 N NAR 9Q6 . . . B 2 30.399 -8.339 25.603 1 46.33 ? NAR 9Q6 401 A 1 HETATM 22 O OAM 9Q6 . . . B 2 30.779 -9.066 20.145 1 48.5 ? OAM 9Q6 401 A 1 HETATM 23 O OAP 9Q6 . . . B 2 32.746 -8.772 24.404 1 61.8 ? OAP 9Q6 401 A 1 HETATM 24 O OAX 9Q6 . . . B 2 21.779 -10.583 23.28 1 33.74 ? OAX 9Q6 401 A 1 HETATM 25 O OAZ 9Q6 . . . B 2 21.004 -13.018 24.183 1 26.75 ? OAZ 9Q6 401 A 1 HETATM 26 O OBA 9Q6 . . . B 2 22.293 -11.391 25.712 1 31.4 ? OBA 9Q6 401 A 1 HETATM 27 O OBB 9Q6 . . . B 2 19.838 -10.812 24.817 1 32.54 ? OBB 9Q6 401 A 1 HETATM 28 O OBC 9Q6 . . . B 2 24.273 -10.459 24.432 1 39.81 ? OBC 9Q6 401 A 1 HETATM 29 O OBD 9Q6 . . . B 2 25.099 -9.729 20.935 1 34.71 ? OBD 9Q6 401 A 1 HETATM 30 O OBE 9Q6 . . . B 2 27.537 -11.062 21.943 1 24.09 ? OBE 9Q6 401 A 1 HETATM 31 O OBF 9Q6 . . . B 2 30.578 -7.098 24.009 1 54.93 ? OBF 9Q6 401 A 1 HETATM 32 P PAY 9Q6 . . . B 2 21.138 -11.447 24.496 1 29.69 ? PAY 9Q6 401 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #