data_6AI8 # _model_server_result.job_id fYBWW-2ybzz513qYBG_drA _model_server_result.datetime_utc '2024-10-11 13:30:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ai8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":402}' # _entry.id 6AI8 # _exptl.entry_id 6AI8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.33 _cell.angle_gamma 90 _cell.entry_id 6AI8 _cell.length_a 53.786 _cell.length_b 113.235 _cell.length_c 57.782 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AI8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 H N N ? 2 I N N ? 2 J N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6AI8 _atom_sites.fract_transf_matrix[1][1] 0.018592 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001081 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008831 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017336 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 401 1 GOL GOL . D 2 GOL A 1 402 4 GOL GOL . E 2 GOL A 1 403 5 GOL GOL . F 2 GOL A 1 404 7 GOL GOL . G 3 SO4 A 1 405 2 SO4 SO4 . H 2 GOL B 1 401 2 GOL GOL . I 2 GOL B 1 402 3 GOL GOL . J 2 GOL B 1 403 6 GOL GOL . K 3 SO4 B 1 404 1 SO4 SO4 . L 4 HOH A 1 501 103 HOH HOH . L 4 HOH A 2 502 98 HOH HOH . L 4 HOH A 3 503 60 HOH HOH . L 4 HOH A 4 504 67 HOH HOH . L 4 HOH A 5 505 26 HOH HOH . L 4 HOH A 6 506 63 HOH HOH . L 4 HOH A 7 507 57 HOH HOH . L 4 HOH A 8 508 189 HOH HOH . L 4 HOH A 9 509 5 HOH HOH . L 4 HOH A 10 510 65 HOH HOH . L 4 HOH A 11 511 32 HOH HOH . L 4 HOH A 12 512 47 HOH HOH . L 4 HOH A 13 513 4 HOH HOH . L 4 HOH A 14 514 183 HOH HOH . L 4 HOH A 15 515 35 HOH HOH . L 4 HOH A 16 516 74 HOH HOH . L 4 HOH A 17 517 96 HOH HOH . L 4 HOH A 18 518 149 HOH HOH . L 4 HOH A 19 519 128 HOH HOH . L 4 HOH A 20 520 42 HOH HOH . L 4 HOH A 21 521 121 HOH HOH . L 4 HOH A 22 522 83 HOH HOH . L 4 HOH A 23 523 71 HOH HOH . L 4 HOH A 24 524 44 HOH HOH . L 4 HOH A 25 525 69 HOH HOH . L 4 HOH A 26 526 146 HOH HOH . L 4 HOH A 27 527 172 HOH HOH . L 4 HOH A 28 528 58 HOH HOH . L 4 HOH A 29 529 75 HOH HOH . L 4 HOH A 30 530 56 HOH HOH . L 4 HOH A 31 531 159 HOH HOH . L 4 HOH A 32 532 18 HOH HOH . L 4 HOH A 33 533 11 HOH HOH . L 4 HOH A 34 534 38 HOH HOH . L 4 HOH A 35 535 129 HOH HOH . L 4 HOH A 36 536 10 HOH HOH . L 4 HOH A 37 537 176 HOH HOH . L 4 HOH A 38 538 90 HOH HOH . L 4 HOH A 39 539 82 HOH HOH . L 4 HOH A 40 540 99 HOH HOH . L 4 HOH A 41 541 20 HOH HOH . L 4 HOH A 42 542 85 HOH HOH . L 4 HOH A 43 543 100 HOH HOH . L 4 HOH A 44 544 135 HOH HOH . L 4 HOH A 45 545 86 HOH HOH . L 4 HOH A 46 546 188 HOH HOH . L 4 HOH A 47 547 22 HOH HOH . L 4 HOH A 48 548 53 HOH HOH . L 4 HOH A 49 549 102 HOH HOH . L 4 HOH A 50 550 64 HOH HOH . L 4 HOH A 51 551 88 HOH HOH . L 4 HOH A 52 552 91 HOH HOH . L 4 HOH A 53 553 175 HOH HOH . L 4 HOH A 54 554 73 HOH HOH . L 4 HOH A 55 555 174 HOH HOH . L 4 HOH A 56 556 28 HOH HOH . L 4 HOH A 57 557 66 HOH HOH . L 4 HOH A 58 558 141 HOH HOH . L 4 HOH A 59 559 16 HOH HOH . L 4 HOH A 60 560 93 HOH HOH . L 4 HOH A 61 561 27 HOH HOH . L 4 HOH A 62 562 138 HOH HOH . L 4 HOH A 63 563 14 HOH HOH . L 4 HOH A 64 564 130 HOH HOH . L 4 HOH A 65 565 7 HOH HOH . L 4 HOH A 66 566 106 HOH HOH . L 4 HOH A 67 567 84 HOH HOH . L 4 HOH A 68 568 6 HOH HOH . L 4 HOH A 69 569 131 HOH HOH . L 4 HOH A 70 570 78 HOH HOH . L 4 HOH A 71 571 166 HOH HOH . L 4 HOH A 72 572 59 HOH HOH . L 4 HOH A 73 573 180 HOH HOH . L 4 HOH A 74 574 152 HOH HOH . L 4 HOH A 75 575 8 HOH HOH . L 4 HOH A 76 576 94 HOH HOH . L 4 HOH A 77 577 122 HOH HOH . L 4 HOH A 78 578 132 HOH HOH . L 4 HOH A 79 579 133 HOH HOH . L 4 HOH A 80 580 105 HOH HOH . L 4 HOH A 81 581 165 HOH HOH . L 4 HOH A 82 582 181 HOH HOH . L 4 HOH A 83 583 184 HOH HOH . L 4 HOH A 84 584 43 HOH HOH . L 4 HOH A 85 585 186 HOH HOH . L 4 HOH A 86 586 104 HOH HOH . L 4 HOH A 87 587 77 HOH HOH . L 4 HOH A 88 588 62 HOH HOH . L 4 HOH A 89 589 92 HOH HOH . L 4 HOH A 90 590 70 HOH HOH . L 4 HOH A 91 591 145 HOH HOH . L 4 HOH A 92 592 89 HOH HOH . L 4 HOH A 93 593 97 HOH HOH . L 4 HOH A 94 594 171 HOH HOH . L 4 HOH A 95 595 79 HOH HOH . L 4 HOH A 96 596 87 HOH HOH . L 4 HOH A 97 597 147 HOH HOH . L 4 HOH A 98 598 158 HOH HOH . L 4 HOH A 99 599 155 HOH HOH . L 4 HOH A 100 600 179 HOH HOH . L 4 HOH A 101 601 61 HOH HOH . L 4 HOH A 102 602 157 HOH HOH . L 4 HOH A 103 603 153 HOH HOH . M 4 HOH B 1 501 137 HOH HOH . M 4 HOH B 2 502 111 HOH HOH . M 4 HOH B 3 503 140 HOH HOH . M 4 HOH B 4 504 68 HOH HOH . M 4 HOH B 5 505 117 HOH HOH . M 4 HOH B 6 506 31 HOH HOH . M 4 HOH B 7 507 164 HOH HOH . M 4 HOH B 8 508 24 HOH HOH . M 4 HOH B 9 509 15 HOH HOH . M 4 HOH B 10 510 54 HOH HOH . M 4 HOH B 11 511 33 HOH HOH . M 4 HOH B 12 512 118 HOH HOH . M 4 HOH B 13 513 13 HOH HOH . M 4 HOH B 14 514 76 HOH HOH . M 4 HOH B 15 515 30 HOH HOH . M 4 HOH B 16 516 191 HOH HOH . M 4 HOH B 17 517 163 HOH HOH . M 4 HOH B 18 518 144 HOH HOH . M 4 HOH B 19 519 156 HOH HOH . M 4 HOH B 20 520 185 HOH HOH . M 4 HOH B 21 521 25 HOH HOH . M 4 HOH B 22 522 142 HOH HOH . M 4 HOH B 23 523 37 HOH HOH . M 4 HOH B 24 524 139 HOH HOH . M 4 HOH B 25 525 167 HOH HOH . M 4 HOH B 26 526 120 HOH HOH . M 4 HOH B 27 527 124 HOH HOH . M 4 HOH B 28 528 21 HOH HOH . M 4 HOH B 29 529 29 HOH HOH . M 4 HOH B 30 530 148 HOH HOH . M 4 HOH B 31 531 41 HOH HOH . M 4 HOH B 32 532 40 HOH HOH . M 4 HOH B 33 533 108 HOH HOH . M 4 HOH B 34 534 116 HOH HOH . M 4 HOH B 35 535 170 HOH HOH . M 4 HOH B 36 536 9 HOH HOH . M 4 HOH B 37 537 113 HOH HOH . M 4 HOH B 38 538 55 HOH HOH . M 4 HOH B 39 539 3 HOH HOH . M 4 HOH B 40 540 51 HOH HOH . M 4 HOH B 41 541 12 HOH HOH . M 4 HOH B 42 542 109 HOH HOH . M 4 HOH B 43 543 36 HOH HOH . M 4 HOH B 44 544 45 HOH HOH . M 4 HOH B 45 545 46 HOH HOH . M 4 HOH B 46 546 110 HOH HOH . M 4 HOH B 47 547 187 HOH HOH . M 4 HOH B 48 548 49 HOH HOH . M 4 HOH B 49 549 126 HOH HOH . M 4 HOH B 50 550 34 HOH HOH . M 4 HOH B 51 551 2 HOH HOH . M 4 HOH B 52 552 119 HOH HOH . M 4 HOH B 53 553 177 HOH HOH . M 4 HOH B 54 554 23 HOH HOH . M 4 HOH B 55 555 39 HOH HOH . M 4 HOH B 56 556 115 HOH HOH . M 4 HOH B 57 557 17 HOH HOH . M 4 HOH B 58 558 19 HOH HOH . M 4 HOH B 59 559 150 HOH HOH . M 4 HOH B 60 560 134 HOH HOH . M 4 HOH B 61 561 80 HOH HOH . M 4 HOH B 62 562 72 HOH HOH . M 4 HOH B 63 563 168 HOH HOH . M 4 HOH B 64 564 127 HOH HOH . M 4 HOH B 65 565 50 HOH HOH . M 4 HOH B 66 566 1 HOH HOH . M 4 HOH B 67 567 192 HOH HOH . M 4 HOH B 68 568 178 HOH HOH . M 4 HOH B 69 569 114 HOH HOH . M 4 HOH B 70 570 112 HOH HOH . M 4 HOH B 71 571 123 HOH HOH . M 4 HOH B 72 572 107 HOH HOH . M 4 HOH B 73 573 169 HOH HOH . M 4 HOH B 74 574 125 HOH HOH . M 4 HOH B 75 575 95 HOH HOH . M 4 HOH B 76 576 52 HOH HOH . M 4 HOH B 77 577 81 HOH HOH . M 4 HOH B 78 578 143 HOH HOH . M 4 HOH B 79 579 136 HOH HOH . M 4 HOH B 80 580 173 HOH HOH . M 4 HOH B 81 581 48 HOH HOH . M 4 HOH B 82 582 190 HOH HOH . M 4 HOH B 83 583 151 HOH HOH . M 4 HOH B 84 584 161 HOH HOH . M 4 HOH B 85 585 101 HOH HOH . M 4 HOH B 86 586 162 HOH HOH . M 4 HOH B 87 587 182 HOH HOH . M 4 HOH B 88 588 154 HOH HOH . M 4 HOH B 89 589 160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 2 7.151 16.809 8.325 1 68.47 ? C1 GOL 402 B 1 HETATM 2 O O1 GOL . . . I 2 6.604 16.413 9.586 1 68.08 ? O1 GOL 402 B 1 HETATM 3 C C2 GOL . . . I 2 7.963 18.074 8.546 1 69.1 ? C2 GOL 402 B 1 HETATM 4 O O2 GOL . . . I 2 8.922 17.85 9.584 1 76.63 ? O2 GOL 402 B 1 HETATM 5 C C3 GOL . . . I 2 8.718 18.494 7.294 1 71.63 ? C3 GOL 402 B 1 HETATM 6 O O3 GOL . . . I 2 9.385 19.762 7.413 1 65.89 ? O3 GOL 402 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 372 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #