data_6AIC # _model_server_result.job_id 94id8P3O5typ0NaloT1EgA _model_server_result.datetime_utc '2024-10-19 23:43:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6aic # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6AIC # _exptl.entry_id 6AIC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 118.53 _cell.angle_gamma 90 _cell.entry_id 6AIC _cell.length_a 44.386 _cell.length_b 52.183 _cell.length_c 44.419 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AIC _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 6AIC _atom_sites.fract_transf_matrix[1][1] 0.02253 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.012247 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019163 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025624 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMP A 1 301 1 AMP AMP . C 3 HOH A 1 401 22 HOH HOH . C 3 HOH A 2 402 11 HOH HOH . C 3 HOH A 3 403 8 HOH HOH . C 3 HOH A 4 404 19 HOH HOH . C 3 HOH A 5 405 4 HOH HOH . C 3 HOH A 6 406 5 HOH HOH . C 3 HOH A 7 407 7 HOH HOH . C 3 HOH A 8 408 14 HOH HOH . C 3 HOH A 9 409 15 HOH HOH . C 3 HOH A 10 410 20 HOH HOH . C 3 HOH A 11 411 23 HOH HOH . C 3 HOH A 12 412 10 HOH HOH . C 3 HOH A 13 413 1 HOH HOH . C 3 HOH A 14 414 3 HOH HOH . C 3 HOH A 15 415 12 HOH HOH . C 3 HOH A 16 416 9 HOH HOH . C 3 HOH A 17 417 2 HOH HOH . C 3 HOH A 18 418 6 HOH HOH . C 3 HOH A 19 419 21 HOH HOH . C 3 HOH A 20 420 13 HOH HOH . C 3 HOH A 21 421 17 HOH HOH . C 3 HOH A 22 422 24 HOH HOH . C 3 HOH A 23 423 18 HOH HOH . C 3 HOH A 24 424 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . B 2 -5.764 3.189 -0.043 1 21.16 ? P AMP 301 A 1 HETATM 2 O O1P AMP . . . B 2 -6.843 4.107 -0.506 1 21.83 ? O1P AMP 301 A 1 HETATM 3 O O2P AMP . . . B 2 -5.836 1.743 -0.477 1 21.25 ? O2P AMP 301 A 1 HETATM 4 O O3P AMP . . . B 2 -4.391 3.809 -0.282 1 24.12 ? O3P AMP 301 A 1 HETATM 5 O O5' AMP . . . B 2 -5.948 3.042 1.564 1 21.07 ? O5' AMP 301 A 1 HETATM 6 C C5' AMP . . . B 2 -5.932 4.162 2.447 1 21.9 ? C5' AMP 301 A 1 HETATM 7 C C4' AMP . . . B 2 -5.874 3.715 3.898 1 22.26 ? C4' AMP 301 A 1 HETATM 8 O O4' AMP . . . B 2 -7.161 3.212 4.294 1 20.13 ? O4' AMP 301 A 1 HETATM 9 C C3' AMP . . . B 2 -4.843 2.622 4.172 1 22.06 ? C3' AMP 301 A 1 HETATM 10 O O3' AMP . . . B 2 -4.022 2.927 5.299 1 26.04 ? O3' AMP 301 A 1 HETATM 11 C C2' AMP . . . B 2 -5.688 1.414 4.465 1 22.19 ? C2' AMP 301 A 1 HETATM 12 O O2' AMP . . . B 2 -5.113 0.524 5.412 1 27.21 ? O2' AMP 301 A 1 HETATM 13 C C1' AMP . . . B 2 -6.929 2.033 5.043 1 20.37 ? C1' AMP 301 A 1 HETATM 14 N N9 AMP . . . B 2 -8.155 1.259 4.886 1 18.94 ? N9 AMP 301 A 1 HETATM 15 C C8 AMP . . . B 2 -8.562 0.679 3.733 1 17.46 ? C8 AMP 301 A 1 HETATM 16 N N7 AMP . . . B 2 -9.738 0.081 3.88 1 17.58 ? N7 AMP 301 A 1 HETATM 17 C C5 AMP . . . B 2 -10.106 0.316 5.15 1 18.05 ? C5 AMP 301 A 1 HETATM 18 C C6 AMP . . . B 2 -11.263 -0.037 5.943 1 18.72 ? C6 AMP 301 A 1 HETATM 19 N N6 AMP . . . B 2 -12.215 -0.749 5.342 1 17.53 ? N6 AMP 301 A 1 HETATM 20 N N1 AMP . . . B 2 -11.299 0.392 7.241 1 17.62 ? N1 AMP 301 A 1 HETATM 21 C C2 AMP . . . B 2 -10.31 1.117 7.786 1 20.38 ? C2 AMP 301 A 1 HETATM 22 N N3 AMP . . . B 2 -9.175 1.467 7.129 1 18.07 ? N3 AMP 301 A 1 HETATM 23 C C4 AMP . . . B 2 -9.062 1.097 5.819 1 19.28 ? C4 AMP 301 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #