data_6AJ5 # _model_server_result.job_id TenlKg29Pc8RzX1B7gvajw _model_server_result.datetime_utc '2024-11-28 09:34:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6aj5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 6AJ5 # _exptl.entry_id 6AJ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6AJ5 _cell.length_a 248.808 _cell.length_b 248.808 _cell.length_c 248.808 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AJ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F 1 1 B,G,H 2 1 C,I,J 3 1 D,K,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 98 A CYS 76 1_555 A SG CYS 166 A CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 98 B CYS 76 1_555 B SG CYS 166 B CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf3 C SG CYS 98 C CYS 76 1_555 C SG CYS 166 C CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? disulf ? disulf4 D SG CYS 98 D CYS 76 1_555 D SG CYS 166 D CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 6AJ5 _atom_sites.fract_transf_matrix[1][1] 0.004019 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004019 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004019 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FMN A 1 501 451 FMN FMN . F 3 ORO A 1 502 452 ORO ORO . G 2 FMN B 1 501 451 FMN FMN . H 3 ORO B 1 502 452 ORO ORO . I 2 FMN C 1 501 451 FMN FMN . J 3 ORO C 1 502 452 ORO ORO . K 2 FMN D 1 501 451 FMN FMN . L 3 ORO D 1 502 452 ORO ORO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . E 2 30.91 255.495 282.477 1 29.1 ? N1 FMN 501 A 1 HETATM 2 C C2 FMN . . . E 2 30.628 256.403 283.453 1 28.97 ? C2 FMN 501 A 1 HETATM 3 O O2 FMN . . . E 2 31.158 256.296 284.579 1 28.79 ? O2 FMN 501 A 1 HETATM 4 N N3 FMN . . . E 2 29.79 257.433 283.228 1 29.09 ? N3 FMN 501 A 1 HETATM 5 C C4 FMN . . . E 2 29.184 257.63 282.045 1 29.28 ? C4 FMN 501 A 1 HETATM 6 O O4 FMN . . . E 2 28.399 258.586 281.903 1 29.56 ? O4 FMN 501 A 1 HETATM 7 C C4A FMN . . . E 2 29.438 256.682 280.933 1 29.34 ? C4A FMN 501 A 1 HETATM 8 N N5 FMN . . . E 2 28.869 256.817 279.716 1 29.69 ? N5 FMN 501 A 1 HETATM 9 C C5A FMN . . . E 2 29.122 255.932 278.704 1 29.87 ? C5A FMN 501 A 1 HETATM 10 C C6 FMN . . . E 2 28.503 256.077 277.45 1 30.12 ? C6 FMN 501 A 1 HETATM 11 C C7 FMN . . . E 2 28.755 255.179 276.413 1 30.24 ? C7 FMN 501 A 1 HETATM 12 C C7M FMN . . . E 2 28.109 255.365 275.089 1 30.75 ? C7M FMN 501 A 1 HETATM 13 C C8 FMN . . . E 2 29.686 254.065 276.614 1 30.25 ? C8 FMN 501 A 1 HETATM 14 C C8M FMN . . . E 2 29.98 253.098 275.512 1 30.79 ? C8M FMN 501 A 1 HETATM 15 C C9 FMN . . . E 2 30.294 253.907 277.843 1 30.03 ? C9 FMN 501 A 1 HETATM 16 C C9A FMN . . . E 2 30.061 254.786 278.92 1 29.74 ? C9A FMN 501 A 1 HETATM 17 N N10 FMN . . . E 2 30.669 254.652 280.2 1 29.39 ? N10 FMN 501 A 1 HETATM 18 C C10 FMN . . . E 2 30.364 255.567 281.23 1 29.23 ? C10 FMN 501 A 1 HETATM 19 C C1' FMN . . . E 2 31.589 253.559 280.468 1 29.39 ? C1' FMN 501 A 1 HETATM 20 C C2' FMN . . . E 2 30.733 252.319 280.645 1 29.38 ? C2' FMN 501 A 1 HETATM 21 O O2' FMN . . . E 2 29.859 252.553 281.766 1 29.15 ? O2' FMN 501 A 1 HETATM 22 C C3' FMN . . . E 2 31.614 251.081 280.787 1 29.52 ? C3' FMN 501 A 1 HETATM 23 O O3' FMN . . . E 2 32.398 251.247 281.971 1 29.32 ? O3' FMN 501 A 1 HETATM 24 C C4' FMN . . . E 2 32.511 250.812 279.558 1 30.02 ? C4' FMN 501 A 1 HETATM 25 O O4' FMN . . . E 2 31.783 250.854 278.334 1 30.2 ? O4' FMN 501 A 1 HETATM 26 C C5' FMN . . . E 2 33.14 249.439 279.586 1 30.51 ? C5' FMN 501 A 1 HETATM 27 O O5' FMN . . . E 2 32.104 248.454 279.68 1 30.77 ? O5' FMN 501 A 1 HETATM 28 P P FMN . . . E 2 31.527 247.574 278.455 1 31.61 ? P FMN 501 A 1 HETATM 29 O O1P FMN . . . E 2 31.37 246.171 279.045 1 31.8 ? O1P FMN 501 A 1 HETATM 30 O O2P FMN . . . E 2 32.667 247.734 277.478 1 32.07 ? O2P FMN 501 A 1 HETATM 31 O O3P FMN . . . E 2 30.215 248.189 277.985 1 31.39 ? O3P FMN 501 A 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 363 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #