data_6AJ5 # _model_server_result.job_id hEZQkM_9N2oBXKsKa1ZWWg _model_server_result.datetime_utc '2024-11-24 16:44:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6aj5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":501}' # _entry.id 6AJ5 # _exptl.entry_id 6AJ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6AJ5 _cell.length_a 248.808 _cell.length_b 248.808 _cell.length_c 248.808 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AJ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F 1 1 B,G,H 2 1 C,I,J 3 1 D,K,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 98 A CYS 76 1_555 A SG CYS 166 A CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 98 B CYS 76 1_555 B SG CYS 166 B CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf3 C SG CYS 98 C CYS 76 1_555 C SG CYS 166 C CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? disulf ? disulf4 D SG CYS 98 D CYS 76 1_555 D SG CYS 166 D CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 6AJ5 _atom_sites.fract_transf_matrix[1][1] 0.004019 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004019 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004019 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FMN A 1 501 451 FMN FMN . F 3 ORO A 1 502 452 ORO ORO . G 2 FMN B 1 501 451 FMN FMN . H 3 ORO B 1 502 452 ORO ORO . I 2 FMN C 1 501 451 FMN FMN . J 3 ORO C 1 502 452 ORO ORO . K 2 FMN D 1 501 451 FMN FMN . L 3 ORO D 1 502 452 ORO ORO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . I 2 80.279 241.89 295.815 1 28.24 ? N1 FMN 501 C 1 HETATM 2 C C2 FMN . . . I 2 80.68 240.932 296.684 1 28.16 ? C2 FMN 501 C 1 HETATM 3 O O2 FMN . . . I 2 80.254 240.97 297.847 1 27.99 ? O2 FMN 501 C 1 HETATM 4 N N3 FMN . . . I 2 81.529 239.949 296.356 1 28.4 ? N3 FMN 501 C 1 HETATM 5 C C4 FMN . . . I 2 82.047 239.854 295.129 1 28.69 ? C4 FMN 501 C 1 HETATM 6 O O4 FMN . . . I 2 82.857 238.942 294.844 1 29.03 ? O4 FMN 501 C 1 HETATM 7 C C4A FMN . . . I 2 81.634 240.859 294.119 1 28.75 ? C4A FMN 501 C 1 HETATM 8 N N5 FMN . . . I 2 82.103 240.818 292.865 1 29.15 ? N5 FMN 501 C 1 HETATM 9 C C5A FMN . . . I 2 81.746 241.736 291.965 1 29.3 ? C5A FMN 501 C 1 HETATM 10 C C6 FMN . . . I 2 82.286 241.625 290.706 1 29.83 ? C6 FMN 501 C 1 HETATM 11 C C7 FMN . . . I 2 81.96 242.548 289.734 1 30.22 ? C7 FMN 501 C 1 HETATM 12 C C7M FMN . . . I 2 82.545 242.434 288.354 1 30.99 ? C7M FMN 501 C 1 HETATM 13 C C8 FMN . . . I 2 81.046 243.652 290.049 1 29.97 ? C8 FMN 501 C 1 HETATM 14 C C8M FMN . . . I 2 80.689 244.653 288.981 1 30.43 ? C8M FMN 501 C 1 HETATM 15 C C9 FMN . . . I 2 80.512 243.746 291.322 1 29.47 ? C9 FMN 501 C 1 HETATM 16 C C9A FMN . . . I 2 80.817 242.83 292.314 1 29.1 ? C9A FMN 501 C 1 HETATM 17 N N10 FMN . . . I 2 80.298 242.897 293.625 1 28.69 ? N10 FMN 501 C 1 HETATM 18 C C10 FMN . . . I 2 80.7 241.919 294.542 1 28.52 ? C10 FMN 501 C 1 HETATM 19 C C1' FMN . . . I 2 79.366 243.934 294.049 1 28.67 ? C1' FMN 501 C 1 HETATM 20 C C2' FMN . . . I 2 80.178 245.173 294.303 1 28.68 ? C2' FMN 501 C 1 HETATM 21 O O2' FMN . . . I 2 80.723 244.938 295.59 1 28.35 ? O2' FMN 501 C 1 HETATM 22 C C3' FMN . . . I 2 79.357 246.454 294.31 1 29.01 ? C3' FMN 501 C 1 HETATM 23 O O3' FMN . . . I 2 78.439 246.233 295.393 1 28.85 ? O3' FMN 501 C 1 HETATM 24 C C4' FMN . . . I 2 78.707 246.801 292.931 1 29.69 ? C4' FMN 501 C 1 HETATM 25 O O4' FMN . . . I 2 79.676 246.858 291.882 1 29.87 ? O4' FMN 501 C 1 HETATM 26 C C5' FMN . . . I 2 77.975 248.128 292.782 1 30.22 ? C5' FMN 501 C 1 HETATM 27 O O5' FMN . . . I 2 78.844 249.246 292.945 1 30.6 ? O5' FMN 501 C 1 HETATM 28 P P FMN . . . I 2 79.585 249.987 291.708 1 31.44 ? P FMN 501 C 1 HETATM 29 O O1P FMN . . . I 2 80.328 251.197 292.313 1 31.44 ? O1P FMN 501 C 1 HETATM 30 O O2P FMN . . . I 2 78.492 250.397 290.751 1 32.06 ? O2P FMN 501 C 1 HETATM 31 O O3P FMN . . . I 2 80.447 248.878 291.147 1 31.38 ? O3P FMN 501 C 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 211 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #