data_6AJA # _model_server_result.job_id wFlLMgonEBFwhWgPmEUJuw _model_server_result.datetime_utc '2024-10-10 09:23:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6aja # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 6AJA # _exptl.entry_id 6AJA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.39 _cell.angle_gamma 90 _cell.entry_id 6AJA _cell.length_a 120.894 _cell.length_b 70.455 _cell.length_c 122.052 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AJA _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,R,S 1 1 C,D,K,L,M,N,O,P,Q,T,U 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 J N N ? 2 K N N ? 2 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 251 A ASP 251 1_555 I CA CA . A CA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? metalc ? metalc2 A O ASP 274 A ASP 274 1_555 F CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? metalc ? metalc3 A OD1 ASP 274 A ASP 274 1_555 F CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc4 A OD1 ASP 278 A ASP 278 1_555 F CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.085 ? metalc ? metalc5 F CA CA . A CA 502 1_555 B OD2 ASP 251 B ASP 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.007 ? metalc ? metalc6 I CA CA . A CA 505 1_555 B OD1 ASP 274 B ASP 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc7 I CA CA . A CA 505 1_555 B OD1 ASP 278 B ASP 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.097 ? metalc ? metalc8 C OD1 ASP 274 C ASP 274 1_555 L CA CA . C CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.989 ? metalc ? metalc9 C OD2 ASP 278 C ASP 278 1_555 L CA CA . C CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc10 D OD1 ASP 274 D ASP 274 1_555 P CA CA . D CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc11 D OD2 ASP 278 D ASP 278 1_555 P CA CA . D CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.835 ? metalc ? metalc12 P CA CA . D CA 502 1_555 Q O2 AKG . D AKG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc13 P CA CA . D CA 502 1_555 Q O5 AKG . D AKG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 265 n n PA O2A NAP sing 266 n n PA O5B NAP sing 267 n n PA O3 NAP sing 268 n n O2A HOA2 NAP sing 269 n n O5B C5B NAP sing 270 n n C5B C4B NAP sing 271 n n C5B H51A NAP sing 272 n n C5B H52A NAP sing 273 n n C4B O4B NAP sing 274 n n C4B C3B NAP sing 275 n n C4B H4B NAP sing 276 n n O4B C1B NAP sing 277 n n C3B O3B NAP sing 278 n n C3B C2B NAP sing 279 n n C3B H3B NAP sing 280 n n O3B HO3A NAP sing 281 n n C2B O2B NAP sing 282 n n C2B C1B NAP sing 283 n n C2B H2B NAP sing 284 n n O2B P2B NAP sing 285 n n C1B N9A NAP sing 286 n n C1B H1B NAP sing 287 n n N9A C8A NAP sing 288 n y N9A C4A NAP sing 289 n y C8A N7A NAP doub 290 n y C8A H8A NAP sing 291 n n N7A C5A NAP sing 292 n y C5A C6A NAP sing 293 n y C5A C4A NAP doub 294 n y C6A N6A NAP sing 295 n n C6A N1A NAP doub 296 n y N6A H61A NAP sing 297 n n N6A H62A NAP sing 298 n n N1A C2A NAP sing 299 n y C2A N3A NAP doub 300 n y C2A H2A NAP sing 301 n n N3A C4A NAP sing 302 n y O3 PN NAP sing 303 n n PN O1N NAP doub 304 n n PN O2N NAP sing 305 n n PN O5D NAP sing 306 n n O5D C5D NAP sing 307 n n C5D C4D NAP sing 308 n n C5D H51N NAP sing 309 n n C5D H52N NAP sing 310 n n C4D O4D NAP sing 311 n n C4D C3D NAP sing 312 n n C4D H4D NAP sing 313 n n O4D C1D NAP sing 314 n n C3D O3D NAP sing 315 n n C3D C2D NAP sing 316 n n C3D H3D NAP sing 317 n n O3D HO3N NAP sing 318 n n C2D O2D NAP sing 319 n n C2D C1D NAP sing 320 n n C2D H2D NAP sing 321 n n O2D HO2N NAP sing 322 n n C1D N1N NAP sing 323 n n C1D H1D NAP sing 324 n n N1N C2N NAP sing 325 n y N1N C6N NAP doub 326 n y C2N C3N NAP doub 327 n y C2N H2N NAP sing 328 n n C3N C7N NAP sing 329 n n C3N C4N NAP sing 330 n y C7N O7N NAP doub 331 n n C7N N7N NAP sing 332 n n N7N H71N NAP sing 333 n n N7N H72N NAP sing 334 n n C4N C5N NAP doub 335 n y C4N H4N NAP sing 336 n n C5N C6N NAP sing 337 n y C5N H5N NAP sing 338 n n C6N H6N NAP sing 339 n n P2B O1X NAP doub 340 n n P2B O2X NAP sing 341 n n P2B O3X NAP sing 342 n n O2X HOP2 NAP sing 343 n n O3X HOP3 NAP sing 344 n n # _atom_sites.entry_id 6AJA _atom_sites.fract_transf_matrix[1][1] 0.008272 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003578 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014193 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008927 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAP A 1 501 415 NAP NAP . F 3 CA A 1 502 501 CA CA . G 4 GOL A 1 503 3 GOL GOL . H 4 GOL A 1 504 4 GOL GOL . I 3 CA A 1 505 501 CA CA . J 2 NAP B 1 501 415 NAP NAP . K 2 NAP C 1 501 415 NAP NAP . L 3 CA C 1 502 501 CA CA . M 4 GOL C 1 503 1 GOL GOL . N 4 GOL C 1 504 2 GOL GOL . O 2 NAP D 1 501 415 NAP NAP . P 3 CA D 1 502 501 CA CA . Q 5 AKG D 1 503 1 AKG AKG . R 6 HOH A 1 601 63 HOH HOH . R 6 HOH A 2 602 32 HOH HOH . R 6 HOH A 3 603 38 HOH HOH . R 6 HOH A 4 604 2 HOH HOH . R 6 HOH A 5 605 57 HOH HOH . R 6 HOH A 6 606 7 HOH HOH . R 6 HOH A 7 607 25 HOH HOH . R 6 HOH A 8 608 44 HOH HOH . R 6 HOH A 9 609 33 HOH HOH . R 6 HOH A 10 610 53 HOH HOH . R 6 HOH A 11 611 65 HOH HOH . R 6 HOH A 12 612 60 HOH HOH . R 6 HOH A 13 613 36 HOH HOH . R 6 HOH A 14 614 59 HOH HOH . R 6 HOH A 15 615 49 HOH HOH . R 6 HOH A 16 616 45 HOH HOH . R 6 HOH A 17 617 55 HOH HOH . R 6 HOH A 18 618 34 HOH HOH . R 6 HOH A 19 619 68 HOH HOH . R 6 HOH A 20 620 66 HOH HOH . R 6 HOH A 21 621 8 HOH HOH . R 6 HOH A 22 622 52 HOH HOH . R 6 HOH A 23 623 58 HOH HOH . R 6 HOH A 24 624 5 HOH HOH . R 6 HOH A 25 625 61 HOH HOH . R 6 HOH A 26 626 46 HOH HOH . R 6 HOH A 27 627 39 HOH HOH . R 6 HOH A 28 628 64 HOH HOH . R 6 HOH A 29 629 37 HOH HOH . R 6 HOH A 30 630 41 HOH HOH . R 6 HOH A 31 631 4 HOH HOH . R 6 HOH A 32 632 67 HOH HOH . R 6 HOH A 33 633 51 HOH HOH . R 6 HOH A 34 634 40 HOH HOH . R 6 HOH A 35 635 48 HOH HOH . R 6 HOH A 36 636 62 HOH HOH . R 6 HOH A 37 637 42 HOH HOH . R 6 HOH A 38 638 56 HOH HOH . R 6 HOH A 39 639 47 HOH HOH . S 6 HOH B 1 601 10 HOH HOH . S 6 HOH B 2 602 15 HOH HOH . S 6 HOH B 3 603 22 HOH HOH . S 6 HOH B 4 604 43 HOH HOH . S 6 HOH B 5 605 20 HOH HOH . S 6 HOH B 6 606 54 HOH HOH . S 6 HOH B 7 607 23 HOH HOH . S 6 HOH B 8 608 21 HOH HOH . T 6 HOH C 1 601 3 HOH HOH . T 6 HOH C 2 602 35 HOH HOH . T 6 HOH C 3 603 31 HOH HOH . T 6 HOH C 4 604 18 HOH HOH . T 6 HOH C 5 605 6 HOH HOH . T 6 HOH C 6 606 27 HOH HOH . T 6 HOH C 7 607 19 HOH HOH . U 6 HOH D 1 601 13 HOH HOH . U 6 HOH D 2 602 1 HOH HOH . U 6 HOH D 3 603 30 HOH HOH . U 6 HOH D 4 604 28 HOH HOH . U 6 HOH D 5 605 12 HOH HOH . U 6 HOH D 6 606 26 HOH HOH . U 6 HOH D 7 607 17 HOH HOH . U 6 HOH D 8 608 29 HOH HOH . U 6 HOH D 9 609 11 HOH HOH . U 6 HOH D 10 610 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . E 2 57.741 1.445 23.2 1 41.66 ? PA NAP 501 A 1 HETATM 2 O O1A NAP . . . E 2 56.866 0.426 23.915 1 42.86 ? O1A NAP 501 A 1 HETATM 3 O O2A NAP . . . E 2 57.151 2.495 22.287 1 40.87 ? O2A NAP 501 A 1 HETATM 4 O O5B NAP . . . E 2 58.941 0.718 22.43 1 41.28 ? O5B NAP 501 A 1 HETATM 5 C C5B NAP . . . E 2 59.71 -0.356 22.954 1 40.81 ? C5B NAP 501 A 1 HETATM 6 C C4B NAP . . . E 2 59.929 -1.4 21.864 1 40.78 ? C4B NAP 501 A 1 HETATM 7 O O4B NAP . . . E 2 58.926 -2.422 21.911 1 42.1 ? O4B NAP 501 A 1 HETATM 8 C C3B NAP . . . E 2 59.849 -0.889 20.434 1 41.05 ? C3B NAP 501 A 1 HETATM 9 O O3B NAP . . . E 2 61.026 -0.174 20.063 1 39.64 ? O3B NAP 501 A 1 HETATM 10 C C2B NAP . . . E 2 59.585 -2.166 19.668 1 41.77 ? C2B NAP 501 A 1 HETATM 11 O O2B NAP . . . E 2 60.76 -2.963 19.561 1 42.92 ? O2B NAP 501 A 1 HETATM 12 C C1B NAP . . . E 2 58.598 -2.865 20.591 1 41.12 ? C1B NAP 501 A 1 HETATM 13 N N9A NAP . . . E 2 57.201 -2.471 20.305 1 41.89 ? N9A NAP 501 A 1 HETATM 14 C C8A NAP . . . E 2 56.399 -1.642 21.021 1 42.28 ? C8A NAP 501 A 1 HETATM 15 N N7A NAP . . . E 2 55.167 -1.512 20.454 1 39.64 ? N7A NAP 501 A 1 HETATM 16 C C5A NAP . . . E 2 55.194 -2.269 19.366 1 40.01 ? C5A NAP 501 A 1 HETATM 17 C C6A NAP . . . E 2 54.244 -2.57 18.312 1 42.24 ? C6A NAP 501 A 1 HETATM 18 N N6A NAP . . . E 2 53.025 -2.013 18.371 1 45.93 ? N6A NAP 501 A 1 HETATM 19 N N1A NAP . . . E 2 54.623 -3.412 17.323 1 44.56 ? N1A NAP 501 A 1 HETATM 20 C C2A NAP . . . E 2 55.863 -3.96 17.289 1 45.57 ? C2A NAP 501 A 1 HETATM 21 N N3A NAP . . . E 2 56.805 -3.712 18.229 1 43.59 ? N3A NAP 501 A 1 HETATM 22 C C4A NAP . . . E 2 56.518 -2.896 19.264 1 42.07 ? C4A NAP 501 A 1 HETATM 23 O O3 NAP . . . E 2 58.488 2.274 24.331 1 42.39 ? O3 NAP 501 A 1 HETATM 24 P PN NAP . . . E 2 59.756 3.167 23.972 1 40.35 ? PN NAP 501 A 1 HETATM 25 O O1N NAP . . . E 2 60.635 2.858 25.163 1 45.32 ? O1N NAP 501 A 1 HETATM 26 O O2N NAP . . . E 2 60.231 2.965 22.556 1 37.72 ? O2N NAP 501 A 1 HETATM 27 O O5D NAP . . . E 2 59.196 4.668 24.15 1 40.03 ? O5D NAP 501 A 1 HETATM 28 C C5D NAP . . . E 2 59.055 5.505 23.01 1 38.31 ? C5D NAP 501 A 1 HETATM 29 C C4D NAP . . . E 2 58.215 6.732 23.309 1 36.84 ? C4D NAP 501 A 1 HETATM 30 O O4D NAP . . . E 2 56.895 6.306 23.618 1 34.99 ? O4D NAP 501 A 1 HETATM 31 C C3D NAP . . . E 2 58.739 7.576 24.462 1 37.31 ? C3D NAP 501 A 1 HETATM 32 O O3D NAP . . . E 2 59.012 8.921 24.047 1 38.75 ? O3D NAP 501 A 1 HETATM 33 C C2D NAP . . . E 2 57.638 7.576 25.493 1 38.31 ? C2D NAP 501 A 1 HETATM 34 O O2D NAP . . . E 2 57.361 8.897 25.978 1 40.54 ? O2D NAP 501 A 1 HETATM 35 C C1D NAP . . . E 2 56.422 7.031 24.758 1 37.64 ? C1D NAP 501 A 1 HETATM 36 N N1N NAP . . . E 2 55.524 6.248 25.641 1 38.32 ? N1N NAP 501 A 1 HETATM 37 C C2N NAP . . . E 2 54.229 6.618 25.628 1 40.05 ? C2N NAP 501 A 1 HETATM 38 C C3N NAP . . . E 2 53.252 5.976 26.383 1 41.46 ? C3N NAP 501 A 1 HETATM 39 C C7N NAP . . . E 2 51.834 6.512 26.266 1 44.57 ? C7N NAP 501 A 1 HETATM 40 O O7N NAP . . . E 2 51.641 7.721 26.345 1 46.45 ? O7N NAP 501 A 1 HETATM 41 N N7N NAP . . . E 2 50.791 5.701 26.063 1 46.45 ? N7N NAP 501 A 1 HETATM 42 C C4N NAP . . . E 2 53.648 4.908 27.208 1 39.11 ? C4N NAP 501 A 1 HETATM 43 C C5N NAP . . . E 2 54.991 4.516 27.223 1 37.92 ? C5N NAP 501 A 1 HETATM 44 C C6N NAP . . . E 2 55.923 5.204 26.42 1 37.85 ? C6N NAP 501 A 1 HETATM 45 P P2B NAP . . . E 2 61.741 -3.037 18.291 1 47.34 ? P2B NAP 501 A 1 HETATM 46 O O1X NAP . . . E 2 62.744 -1.912 18.435 1 49.94 ? O1X NAP 501 A 1 HETATM 47 O O2X NAP . . . E 2 62.334 -4.409 18.421 1 50.18 ? O2X NAP 501 A 1 HETATM 48 O O3X NAP . . . E 2 60.874 -2.943 17.075 1 50.83 ? O3X NAP 501 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #