data_6AJA
#
_model_server_result.job_id            ml49pDiXrudz66cRFssiRw 
_model_server_result.datetime_utc      '2024-10-10 09:23:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6aja 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":503}' 
#
_entry.id    6AJA 
#
_exptl.entry_id    6AJA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              146.098 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-OXOGLUTARIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          113.39 
_cell.angle_gamma         90 
_cell.entry_id            6AJA 
_cell.length_a            120.894 
_cell.length_b            70.455 
_cell.length_c            122.052 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6AJA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,J,R,S 1 1 
C,D,K,L,M,N,O,P,Q,T,U 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             Q 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 251 A ASP 251 1_555 I CA CA . A CA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.781 ? 
metalc ? metalc2 A O ASP 274 A ASP 274 1_555 F CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? 
metalc ? metalc3 A OD1 ASP 274 A ASP 274 1_555 F CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? 
metalc ? metalc4 A OD1 ASP 278 A ASP 278 1_555 F CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.085 ? 
metalc ? metalc5 F CA CA . A CA 502 1_555 B OD2 ASP 251 B ASP 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.007 ? 
metalc ? metalc6 I CA CA . A CA 505 1_555 B OD1 ASP 274 B ASP 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? 
metalc ? metalc7 I CA CA . A CA 505 1_555 B OD1 ASP 278 B ASP 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.097 ? 
metalc ? metalc8 C OD1 ASP 274 C ASP 274 1_555 L CA CA . C CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.989 ? 
metalc ? metalc9 C OD2 ASP 278 C ASP 278 1_555 L CA CA . C CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? 
metalc ? metalc10 D OD1 ASP 274 D ASP 274 1_555 P CA CA . D CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? 
metalc ? metalc11 D OD2 ASP 278 D ASP 278 1_555 P CA CA . D CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.835 ? 
metalc ? metalc12 P CA CA . D CA 502 1_555 Q O2 AKG . D AKG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? 
metalc ? metalc13 P CA CA . D CA 502 1_555 Q O5 AKG . D AKG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
#
_chem_comp.formula           'C5 H6 O5' 
_chem_comp.formula_weight    146.098 
_chem_comp.id                AKG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-OXOGLUTARIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 AKG doub 1 n n 
C1 O2 AKG sing 2 n n 
C1 C2 AKG sing 3 n n 
O2 HO2 AKG sing 4 n n 
C2 O5 AKG doub 5 n n 
C2 C3 AKG sing 6 n n 
C3 C4 AKG sing 7 n n 
C3 H31 AKG sing 8 n n 
C3 H32 AKG sing 9 n n 
C4 C5 AKG sing 10 n n 
C4 H41 AKG sing 11 n n 
C4 H42 AKG sing 12 n n 
C5 O3 AKG doub 13 n n 
C5 O4 AKG sing 14 n n 
O4 HO4 AKG sing 15 n n 
#
_atom_sites.entry_id                     6AJA 
_atom_sites.fract_transf_matrix[1][1]    0.008272 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003578 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014193 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008927 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAP A 1 501 415 NAP NAP . 
F 3 CA A 1 502 501 CA CA . 
G 4 GOL A 1 503 3 GOL GOL . 
H 4 GOL A 1 504 4 GOL GOL . 
I 3 CA A 1 505 501 CA CA . 
J 2 NAP B 1 501 415 NAP NAP . 
K 2 NAP C 1 501 415 NAP NAP . 
L 3 CA C 1 502 501 CA CA . 
M 4 GOL C 1 503 1 GOL GOL . 
N 4 GOL C 1 504 2 GOL GOL . 
O 2 NAP D 1 501 415 NAP NAP . 
P 3 CA D 1 502 501 CA CA . 
Q 5 AKG D 1 503 1 AKG AKG . 
R 6 HOH A 1 601 63 HOH HOH . 
R 6 HOH A 2 602 32 HOH HOH . 
R 6 HOH A 3 603 38 HOH HOH . 
R 6 HOH A 4 604 2 HOH HOH . 
R 6 HOH A 5 605 57 HOH HOH . 
R 6 HOH A 6 606 7 HOH HOH . 
R 6 HOH A 7 607 25 HOH HOH . 
R 6 HOH A 8 608 44 HOH HOH . 
R 6 HOH A 9 609 33 HOH HOH . 
R 6 HOH A 10 610 53 HOH HOH . 
R 6 HOH A 11 611 65 HOH HOH . 
R 6 HOH A 12 612 60 HOH HOH . 
R 6 HOH A 13 613 36 HOH HOH . 
R 6 HOH A 14 614 59 HOH HOH . 
R 6 HOH A 15 615 49 HOH HOH . 
R 6 HOH A 16 616 45 HOH HOH . 
R 6 HOH A 17 617 55 HOH HOH . 
R 6 HOH A 18 618 34 HOH HOH . 
R 6 HOH A 19 619 68 HOH HOH . 
R 6 HOH A 20 620 66 HOH HOH . 
R 6 HOH A 21 621 8 HOH HOH . 
R 6 HOH A 22 622 52 HOH HOH . 
R 6 HOH A 23 623 58 HOH HOH . 
R 6 HOH A 24 624 5 HOH HOH . 
R 6 HOH A 25 625 61 HOH HOH . 
R 6 HOH A 26 626 46 HOH HOH . 
R 6 HOH A 27 627 39 HOH HOH . 
R 6 HOH A 28 628 64 HOH HOH . 
R 6 HOH A 29 629 37 HOH HOH . 
R 6 HOH A 30 630 41 HOH HOH . 
R 6 HOH A 31 631 4 HOH HOH . 
R 6 HOH A 32 632 67 HOH HOH . 
R 6 HOH A 33 633 51 HOH HOH . 
R 6 HOH A 34 634 40 HOH HOH . 
R 6 HOH A 35 635 48 HOH HOH . 
R 6 HOH A 36 636 62 HOH HOH . 
R 6 HOH A 37 637 42 HOH HOH . 
R 6 HOH A 38 638 56 HOH HOH . 
R 6 HOH A 39 639 47 HOH HOH . 
S 6 HOH B 1 601 10 HOH HOH . 
S 6 HOH B 2 602 15 HOH HOH . 
S 6 HOH B 3 603 22 HOH HOH . 
S 6 HOH B 4 604 43 HOH HOH . 
S 6 HOH B 5 605 20 HOH HOH . 
S 6 HOH B 6 606 54 HOH HOH . 
S 6 HOH B 7 607 23 HOH HOH . 
S 6 HOH B 8 608 21 HOH HOH . 
T 6 HOH C 1 601 3 HOH HOH . 
T 6 HOH C 2 602 35 HOH HOH . 
T 6 HOH C 3 603 31 HOH HOH . 
T 6 HOH C 4 604 18 HOH HOH . 
T 6 HOH C 5 605 6 HOH HOH . 
T 6 HOH C 6 606 27 HOH HOH . 
T 6 HOH C 7 607 19 HOH HOH . 
U 6 HOH D 1 601 13 HOH HOH . 
U 6 HOH D 2 602 1 HOH HOH . 
U 6 HOH D 3 603 30 HOH HOH . 
U 6 HOH D 4 604 28 HOH HOH . 
U 6 HOH D 5 605 12 HOH HOH . 
U 6 HOH D 6 606 26 HOH HOH . 
U 6 HOH D 7 607 17 HOH HOH . 
U 6 HOH D 8 608 29 HOH HOH . 
U 6 HOH D 9 609 11 HOH HOH . 
U 6 HOH D 10 610 9 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 AKG . . . Q 5 10.833 48.49 -21.372 1 81.38 ? C1 AKG 503 D 1 
HETATM 2 O O1 AKG . . . Q 5 10.992 48.193 -22.569 1 85.6 ? O1 AKG 503 D 1 
HETATM 3 O O2 AKG . . . Q 5 11.341 49.527 -20.872 1 75.07 ? O2 AKG 503 D 1 
HETATM 4 C C2 AKG . . . Q 5 10.085 47.582 -20.51 1 82.54 ? C2 AKG 503 D 1 
HETATM 5 O O5 AKG . . . Q 5 10.469 47.509 -19.354 1 83.11 ? O5 AKG 503 D 1 
HETATM 6 C C3 AKG . . . Q 5 8.917 46.757 -21.023 1 83.6 ? C3 AKG 503 D 1 
HETATM 7 C C4 AKG . . . Q 5 7.869 46.487 -19.929 1 87.69 ? C4 AKG 503 D 1 
HETATM 8 C C5 AKG . . . Q 5 6.495 47.057 -20.208 1 88.69 ? C5 AKG 503 D 1 
HETATM 9 O O3 AKG . . . Q 5 6.364 48.147 -20.79 1 90.28 ? O3 AKG 503 D 1 
HETATM 10 O O4 AKG . . . Q 5 5.514 46.407 -19.81 1 90.56 ? O4 AKG 503 D 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           10 
#