data_6AJB # _model_server_result.job_id ltgKyLKPsQPjYZsF8cRPzg _model_server_result.datetime_utc '2024-12-13 06:00:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ajb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":501}' # _entry.id 6AJB # _exptl.entry_id 6AJB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.42 _cell.angle_gamma 90 _cell.entry_id 6AJB _cell.length_a 120.52 _cell.length_b 70.464 _cell.length_c 121.929 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AJB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H 1 1 C,D,I,J,K,L,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 274 A ASP 274 1_555 F CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.021 ? metalc ? metalc2 A OD1 ASP 274 A ASP 274 1_555 F CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc3 A OD1 ASP 278 A ASP 278 1_555 F CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.078 ? metalc ? metalc4 F CA CA . A CA 502 1_555 B OD2 ASP 251 B ASP 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.024 ? metalc ? metalc5 B OD1 ASP 274 B ASP 274 1_555 H CA CA . B CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc6 B OD2 ASP 278 B ASP 278 1_555 H CA CA . B CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? metalc ? metalc7 C OD2 ASP 274 C ASP 274 1_555 J CA CA . C CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc8 C OD2 ASP 278 C ASP 278 1_555 J CA CA . C CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc9 D OD1 ASP 274 D ASP 274 1_555 M CA CA . D CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc10 L O2 AKG . D AKG 502 1_555 M CA CA . D CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc11 L O5 AKG . D AKG 502 1_555 M CA CA . D CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 250 n n PA O2A NAD sing 251 n n PA O5B NAD sing 252 n n PA O3 NAD sing 253 n n O2A HOA2 NAD sing 254 n n O5B C5B NAD sing 255 n n C5B C4B NAD sing 256 n n C5B H51A NAD sing 257 n n C5B H52A NAD sing 258 n n C4B O4B NAD sing 259 n n C4B C3B NAD sing 260 n n C4B H4B NAD sing 261 n n O4B C1B NAD sing 262 n n C3B O3B NAD sing 263 n n C3B C2B NAD sing 264 n n C3B H3B NAD sing 265 n n O3B HO3A NAD sing 266 n n C2B O2B NAD sing 267 n n C2B C1B NAD sing 268 n n C2B H2B NAD sing 269 n n O2B HO2A NAD sing 270 n n C1B N9A NAD sing 271 n n C1B H1B NAD sing 272 n n N9A C8A NAD sing 273 n y N9A C4A NAD sing 274 n y C8A N7A NAD doub 275 n y C8A H8A NAD sing 276 n n N7A C5A NAD sing 277 n y C5A C6A NAD sing 278 n y C5A C4A NAD doub 279 n y C6A N6A NAD sing 280 n n C6A N1A NAD doub 281 n y N6A H61A NAD sing 282 n n N6A H62A NAD sing 283 n n N1A C2A NAD sing 284 n y C2A N3A NAD doub 285 n y C2A H2A NAD sing 286 n n N3A C4A NAD sing 287 n y O3 PN NAD sing 288 n n PN O1N NAD doub 289 n n PN O2N NAD sing 290 n n PN O5D NAD sing 291 n n O5D C5D NAD sing 292 n n C5D C4D NAD sing 293 n n C5D H51N NAD sing 294 n n C5D H52N NAD sing 295 n n C4D O4D NAD sing 296 n n C4D C3D NAD sing 297 n n C4D H4D NAD sing 298 n n O4D C1D NAD sing 299 n n C3D O3D NAD sing 300 n n C3D C2D NAD sing 301 n n C3D H3D NAD sing 302 n n O3D HO3N NAD sing 303 n n C2D O2D NAD sing 304 n n C2D C1D NAD sing 305 n n C2D H2D NAD sing 306 n n O2D HO2N NAD sing 307 n n C1D N1N NAD sing 308 n n C1D H1D NAD sing 309 n n N1N C2N NAD sing 310 n y N1N C6N NAD doub 311 n y C2N C3N NAD doub 312 n y C2N H2N NAD sing 313 n n C3N C7N NAD sing 314 n n C3N C4N NAD sing 315 n y C7N O7N NAD doub 316 n n C7N N7N NAD sing 317 n n N7N H71N NAD sing 318 n n N7N H72N NAD sing 319 n n C4N C5N NAD doub 320 n y C4N H4N NAD sing 321 n n C5N C6N NAD sing 322 n y C5N H5N NAD sing 323 n n C6N H6N NAD sing 324 n n # _atom_sites.entry_id 6AJB _atom_sites.fract_transf_matrix[1][1] 0.008297 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003594 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014192 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008938 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAD A 1 501 415 NAD NAD . F 3 CA A 1 502 501 CA CA . G 2 NAD B 1 501 415 NAD NAD . H 3 CA B 1 502 501 CA CA . I 2 NAD C 1 501 415 NAD NAD . J 3 CA C 1 502 501 CA CA . K 2 NAD D 1 501 415 NAD NAD . L 4 AKG D 1 502 451 AKG AKG . M 3 CA D 1 503 501 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . I 2 38.116 13.76 -8.406 1 55.3 ? PA NAD 501 C 1 HETATM 2 O O1A NAD . . . I 2 37.179 14.756 -7.722 1 52.47 ? O1A NAD 501 C 1 HETATM 3 O O2A NAD . . . I 2 39.009 12.767 -7.677 1 54.45 ? O2A NAD 501 C 1 HETATM 4 O O5B NAD . . . I 2 39.054 14.534 -9.461 1 55.79 ? O5B NAD 501 C 1 HETATM 5 C C5B NAD . . . I 2 38.951 15.883 -9.914 1 54.44 ? C5B NAD 501 C 1 HETATM 6 C C4B NAD . . . I 2 40.353 16.474 -9.918 1 53.65 ? C4B NAD 501 C 1 HETATM 7 O O4B NAD . . . I 2 40.231 17.75 -9.323 1 51.52 ? O4B NAD 501 C 1 HETATM 8 C C3B NAD . . . I 2 41.405 15.688 -9.092 1 55.28 ? C3B NAD 501 C 1 HETATM 9 O O3B NAD . . . I 2 42.122 14.575 -9.711 1 57.78 ? O3B NAD 501 C 1 HETATM 10 C C2B NAD . . . I 2 42.293 16.806 -8.6 1 54.35 ? C2B NAD 501 C 1 HETATM 11 O O2B NAD . . . I 2 43.243 17.243 -9.589 1 54.22 ? O2B NAD 501 C 1 HETATM 12 C C1B NAD . . . I 2 41.218 17.858 -8.274 1 54.21 ? C1B NAD 501 C 1 HETATM 13 N N9A NAD . . . I 2 40.71 17.589 -6.865 1 52.89 ? N9A NAD 501 C 1 HETATM 14 C C8A NAD . . . I 2 39.578 16.917 -6.546 1 52.23 ? C8A NAD 501 C 1 HETATM 15 N N7A NAD . . . I 2 39.407 16.814 -5.202 1 51.98 ? N7A NAD 501 C 1 HETATM 16 C C5A NAD . . . I 2 40.45 17.43 -4.604 1 51.46 ? C5A NAD 501 C 1 HETATM 17 C C6A NAD . . . I 2 40.872 17.678 -3.189 1 49.96 ? C6A NAD 501 C 1 HETATM 18 N N6A NAD . . . I 2 40.086 17.223 -2.176 1 49.02 ? N6A NAD 501 C 1 HETATM 19 N N1A NAD . . . I 2 42.02 18.377 -2.986 1 47.78 ? N1A NAD 501 C 1 HETATM 20 C C2A NAD . . . I 2 42.756 18.831 -4.019 1 47.44 ? C2A NAD 501 C 1 HETATM 21 N N3A NAD . . . I 2 42.433 18.636 -5.317 1 47.4 ? N3A NAD 501 C 1 HETATM 22 C C4A NAD . . . I 2 41.315 17.95 -5.692 1 50.89 ? C4A NAD 501 C 1 HETATM 23 O O3 NAD . . . I 2 37.316 12.8 -9.421 1 56.78 ? O3 NAD 501 C 1 HETATM 24 P PN NAD . . . I 2 38.178 12.049 -10.567 1 57.21 ? PN NAD 501 C 1 HETATM 25 O O1N NAD . . . I 2 39.688 12.297 -10.268 1 55.36 ? O1N NAD 501 C 1 HETATM 26 O O2N NAD . . . I 2 37.492 12.449 -11.854 1 50.32 ? O2N NAD 501 C 1 HETATM 27 O O5D NAD . . . I 2 37.89 10.494 -10.215 1 52.89 ? O5D NAD 501 C 1 HETATM 28 C C5D NAD . . . I 2 38.969 9.589 -9.943 1 49.56 ? C5D NAD 501 C 1 HETATM 29 C C4D NAD . . . I 2 38.37 8.381 -9.288 1 47.53 ? C4D NAD 501 C 1 HETATM 30 O O4D NAD . . . I 2 37.469 8.849 -8.283 1 47.35 ? O4D NAD 501 C 1 HETATM 31 C C3D NAD . . . I 2 37.553 7.546 -10.235 1 46.24 ? C3D NAD 501 C 1 HETATM 32 O O3D NAD . . . I 2 37.718 6.198 -9.813 1 45.73 ? O3D NAD 501 C 1 HETATM 33 C C2D NAD . . . I 2 36.144 8.004 -10.008 1 45.84 ? C2D NAD 501 C 1 HETATM 34 O O2D NAD . . . I 2 35.258 6.965 -10.315 1 45.01 ? O2D NAD 501 C 1 HETATM 35 C C1D NAD . . . I 2 36.16 8.296 -8.51 1 46.76 ? C1D NAD 501 C 1 HETATM 36 N N1N NAD . . . I 2 35.075 9.155 -7.955 1 45.72 ? N1N NAD 501 C 1 HETATM 37 C C2N NAD . . . I 2 34.45 8.726 -6.848 1 45.77 ? C2N NAD 501 C 1 HETATM 38 C C3N NAD . . . I 2 33.426 9.428 -6.212 1 46.1 ? C3N NAD 501 C 1 HETATM 39 C C7N NAD . . . I 2 32.766 8.909 -4.948 1 47.79 ? C7N NAD 501 C 1 HETATM 40 O O7N NAD . . . I 2 31.939 9.618 -4.4 1 49.31 ? O7N NAD 501 C 1 HETATM 41 N N7N NAD . . . I 2 33.054 7.729 -4.379 1 47.74 ? N7N NAD 501 C 1 HETATM 42 C C4N NAD . . . I 2 33.043 10.638 -6.765 1 45.34 ? C4N NAD 501 C 1 HETATM 43 C C5N NAD . . . I 2 33.696 11.085 -7.915 1 45.71 ? C5N NAD 501 C 1 HETATM 44 C C6N NAD . . . I 2 34.72 10.33 -8.498 1 45.49 ? C6N NAD 501 C 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #