data_6AJB # _model_server_result.job_id hb5y_grV1lu6IkvEDb938Q _model_server_result.datetime_utc '2024-12-13 05:47:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ajb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":501}' # _entry.id 6AJB # _exptl.entry_id 6AJB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.42 _cell.angle_gamma 90 _cell.entry_id 6AJB _cell.length_a 120.52 _cell.length_b 70.464 _cell.length_c 121.929 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AJB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H 1 1 C,D,I,J,K,L,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 274 A ASP 274 1_555 F CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.021 ? metalc ? metalc2 A OD1 ASP 274 A ASP 274 1_555 F CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc3 A OD1 ASP 278 A ASP 278 1_555 F CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.078 ? metalc ? metalc4 F CA CA . A CA 502 1_555 B OD2 ASP 251 B ASP 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.024 ? metalc ? metalc5 B OD1 ASP 274 B ASP 274 1_555 H CA CA . B CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc6 B OD2 ASP 278 B ASP 278 1_555 H CA CA . B CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? metalc ? metalc7 C OD2 ASP 274 C ASP 274 1_555 J CA CA . C CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc8 C OD2 ASP 278 C ASP 278 1_555 J CA CA . C CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc9 D OD1 ASP 274 D ASP 274 1_555 M CA CA . D CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc10 L O2 AKG . D AKG 502 1_555 M CA CA . D CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc11 L O5 AKG . D AKG 502 1_555 M CA CA . D CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 250 n n PA O2A NAD sing 251 n n PA O5B NAD sing 252 n n PA O3 NAD sing 253 n n O2A HOA2 NAD sing 254 n n O5B C5B NAD sing 255 n n C5B C4B NAD sing 256 n n C5B H51A NAD sing 257 n n C5B H52A NAD sing 258 n n C4B O4B NAD sing 259 n n C4B C3B NAD sing 260 n n C4B H4B NAD sing 261 n n O4B C1B NAD sing 262 n n C3B O3B NAD sing 263 n n C3B C2B NAD sing 264 n n C3B H3B NAD sing 265 n n O3B HO3A NAD sing 266 n n C2B O2B NAD sing 267 n n C2B C1B NAD sing 268 n n C2B H2B NAD sing 269 n n O2B HO2A NAD sing 270 n n C1B N9A NAD sing 271 n n C1B H1B NAD sing 272 n n N9A C8A NAD sing 273 n y N9A C4A NAD sing 274 n y C8A N7A NAD doub 275 n y C8A H8A NAD sing 276 n n N7A C5A NAD sing 277 n y C5A C6A NAD sing 278 n y C5A C4A NAD doub 279 n y C6A N6A NAD sing 280 n n C6A N1A NAD doub 281 n y N6A H61A NAD sing 282 n n N6A H62A NAD sing 283 n n N1A C2A NAD sing 284 n y C2A N3A NAD doub 285 n y C2A H2A NAD sing 286 n n N3A C4A NAD sing 287 n y O3 PN NAD sing 288 n n PN O1N NAD doub 289 n n PN O2N NAD sing 290 n n PN O5D NAD sing 291 n n O5D C5D NAD sing 292 n n C5D C4D NAD sing 293 n n C5D H51N NAD sing 294 n n C5D H52N NAD sing 295 n n C4D O4D NAD sing 296 n n C4D C3D NAD sing 297 n n C4D H4D NAD sing 298 n n O4D C1D NAD sing 299 n n C3D O3D NAD sing 300 n n C3D C2D NAD sing 301 n n C3D H3D NAD sing 302 n n O3D HO3N NAD sing 303 n n C2D O2D NAD sing 304 n n C2D C1D NAD sing 305 n n C2D H2D NAD sing 306 n n O2D HO2N NAD sing 307 n n C1D N1N NAD sing 308 n n C1D H1D NAD sing 309 n n N1N C2N NAD sing 310 n y N1N C6N NAD doub 311 n y C2N C3N NAD doub 312 n y C2N H2N NAD sing 313 n n C3N C7N NAD sing 314 n n C3N C4N NAD sing 315 n y C7N O7N NAD doub 316 n n C7N N7N NAD sing 317 n n N7N H71N NAD sing 318 n n N7N H72N NAD sing 319 n n C4N C5N NAD doub 320 n y C4N H4N NAD sing 321 n n C5N C6N NAD sing 322 n y C5N H5N NAD sing 323 n n C6N H6N NAD sing 324 n n # _atom_sites.entry_id 6AJB _atom_sites.fract_transf_matrix[1][1] 0.008297 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003594 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014192 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008938 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAD A 1 501 415 NAD NAD . F 3 CA A 1 502 501 CA CA . G 2 NAD B 1 501 415 NAD NAD . H 3 CA B 1 502 501 CA CA . I 2 NAD C 1 501 415 NAD NAD . J 3 CA C 1 502 501 CA CA . K 2 NAD D 1 501 415 NAD NAD . L 4 AKG D 1 502 451 AKG AKG . M 3 CA D 1 503 501 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . K 2 10.295 37.454 -13.559 1 61.74 ? PA NAD 501 D 1 HETATM 2 O O1A NAD . . . K 2 10.714 36.211 -14.35 1 61.14 ? O1A NAD 501 D 1 HETATM 3 O O2A NAD . . . K 2 10.395 38.81 -14.235 1 60.31 ? O2A NAD 501 D 1 HETATM 4 O O5B NAD . . . K 2 11.229 37.53 -12.244 1 63.1 ? O5B NAD 501 D 1 HETATM 5 C C5B NAD . . . K 2 10.791 38.129 -11.012 1 63.24 ? C5B NAD 501 D 1 HETATM 6 C C4B NAD . . . K 2 11.987 38.362 -10.09 1 61.24 ? C4B NAD 501 D 1 HETATM 7 O O4B NAD . . . K 2 13.088 38.793 -10.89 1 60.29 ? O4B NAD 501 D 1 HETATM 8 C C3B NAD . . . K 2 11.767 39.421 -9.008 1 60.98 ? C3B NAD 501 D 1 HETATM 9 O O3B NAD . . . K 2 12.199 38.933 -7.725 1 59.98 ? O3B NAD 501 D 1 HETATM 10 C C2B NAD . . . K 2 12.585 40.629 -9.43 1 60.63 ? C2B NAD 501 D 1 HETATM 11 O O2B NAD . . . K 2 13.412 41.151 -8.373 1 62.1 ? O2B NAD 501 D 1 HETATM 12 C C1B NAD . . . K 2 13.463 40.136 -10.577 1 59.72 ? C1B NAD 501 D 1 HETATM 13 N N9A NAD . . . K 2 13.312 40.991 -11.768 1 57.66 ? N9A NAD 501 D 1 HETATM 14 C C8A NAD . . . K 2 12.866 40.591 -12.966 1 57.85 ? C8A NAD 501 D 1 HETATM 15 N N7A NAD . . . K 2 12.865 41.617 -13.833 1 57.91 ? N7A NAD 501 D 1 HETATM 16 C C5A NAD . . . K 2 13.313 42.681 -13.182 1 57.16 ? C5A NAD 501 D 1 HETATM 17 C C6A NAD . . . K 2 13.538 44.082 -13.537 1 58.82 ? C6A NAD 501 D 1 HETATM 18 N N6A NAD . . . K 2 13.247 44.478 -14.799 1 59.31 ? N6A NAD 501 D 1 HETATM 19 N N1A NAD . . . K 2 14.034 44.905 -12.57 1 59.46 ? N1A NAD 501 D 1 HETATM 20 C C2A NAD . . . K 2 14.301 44.469 -11.315 1 58.65 ? C2A NAD 501 D 1 HETATM 21 N N3A NAD . . . K 2 14.099 43.187 -10.941 1 58.08 ? N3A NAD 501 D 1 HETATM 22 C C4A NAD . . . K 2 13.617 42.273 -11.817 1 56.99 ? C4A NAD 501 D 1 HETATM 23 O O3 NAD . . . K 2 8.822 37.279 -12.872 1 58.35 ? O3 NAD 501 D 1 HETATM 24 P PN NAD . . . K 2 8.218 35.897 -12.238 1 55.47 ? PN NAD 501 D 1 HETATM 25 O O1N NAD . . . K 2 9.093 34.681 -12.562 1 50.27 ? O1N NAD 501 D 1 HETATM 26 O O2N NAD . . . K 2 7.691 36.276 -10.853 1 52.9 ? O2N NAD 501 D 1 HETATM 27 O O5D NAD . . . K 2 6.933 35.71 -13.217 1 57.42 ? O5D NAD 501 D 1 HETATM 28 C C5D NAD . . . K 2 5.79 36.575 -13.215 1 57.17 ? C5D NAD 501 D 1 HETATM 29 C C4D NAD . . . K 2 4.852 36.293 -14.372 1 56.3 ? C4D NAD 501 D 1 HETATM 30 O O4D NAD . . . K 2 5.591 36.517 -15.562 1 55.55 ? O4D NAD 501 D 1 HETATM 31 C C3D NAD . . . K 2 4.347 34.857 -14.409 1 57.52 ? C3D NAD 501 D 1 HETATM 32 O O3D NAD . . . K 2 2.927 34.833 -14.551 1 56.45 ? O3D NAD 501 D 1 HETATM 33 C C2D NAD . . . K 2 5.102 34.234 -15.593 1 58.64 ? C2D NAD 501 D 1 HETATM 34 O O2D NAD . . . K 2 4.498 33.121 -16.306 1 58.57 ? O2D NAD 501 D 1 HETATM 35 C C1D NAD . . . K 2 5.359 35.444 -16.49 1 57.62 ? C1D NAD 501 D 1 HETATM 36 N N1N NAD . . . K 2 6.468 35.319 -17.475 1 58.7 ? N1N NAD 501 D 1 HETATM 37 C C2N NAD . . . K 2 6.356 36.029 -18.621 1 57.68 ? C2N NAD 501 D 1 HETATM 38 C C3N NAD . . . K 2 7.328 36.014 -19.607 1 57.22 ? C3N NAD 501 D 1 HETATM 39 C C7N NAD . . . K 2 7.156 36.841 -20.847 1 58.09 ? C7N NAD 501 D 1 HETATM 40 O O7N NAD . . . K 2 6.43 36.432 -21.719 1 61.31 ? O7N NAD 501 D 1 HETATM 41 N N7N NAD . . . K 2 7.772 38.017 -21.001 1 57.64 ? N7N NAD 501 D 1 HETATM 42 C C4N NAD . . . K 2 8.46 35.26 -19.413 1 57.28 ? C4N NAD 501 D 1 HETATM 43 C C5N NAD . . . K 2 8.583 34.516 -18.241 1 59.77 ? C5N NAD 501 D 1 HETATM 44 C C6N NAD . . . K 2 7.578 34.553 -17.275 1 59.79 ? C6N NAD 501 D 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 460 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 44 #