data_6AJE # _model_server_result.job_id e16nI-tM0rTh7WCc15x1Vw _model_server_result.datetime_utc '2024-11-08 15:53:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6aje # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 6AJE # _exptl.entry_id 6AJE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6AJE _cell.length_a 132.984 _cell.length_b 132.984 _cell.length_c 214.998 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AJE _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G 1 1 B,H,I,J 2 1 C,K,L,M 3 1 D,N,O,P 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 K N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 98 A CYS 76 1_555 A SG CYS 166 A CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 C SG CYS 98 C CYS 76 1_555 C SG CYS 166 C CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf3 D SG CYS 98 D CYS 76 1_555 D SG CYS 166 D CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 141 n n N1 C10 FMN doub 142 n n C2 O2 FMN doub 143 n n C2 N3 FMN sing 144 n n N3 C4 FMN sing 145 n n N3 HN3 FMN sing 146 n n C4 O4 FMN doub 147 n n C4 C4A FMN sing 148 n n C4A N5 FMN doub 149 n n C4A C10 FMN sing 150 n n N5 C5A FMN sing 151 n n C5A C6 FMN doub 152 n y C5A C9A FMN sing 153 n y C6 C7 FMN sing 154 n y C6 H6 FMN sing 155 n n C7 C7M FMN sing 156 n n C7 C8 FMN doub 157 n y C7M HM71 FMN sing 158 n n C7M HM72 FMN sing 159 n n C7M HM73 FMN sing 160 n n C8 C8M FMN sing 161 n n C8 C9 FMN sing 162 n y C8M HM81 FMN sing 163 n n C8M HM82 FMN sing 164 n n C8M HM83 FMN sing 165 n n C9 C9A FMN doub 166 n y C9 H9 FMN sing 167 n n C9A N10 FMN sing 168 n n N10 C10 FMN sing 169 n n N10 C1' FMN sing 170 n n C1' C2' FMN sing 171 n n C1' "H1'1" FMN sing 172 n n C1' "H1'2" FMN sing 173 n n C2' O2' FMN sing 174 n n C2' C3' FMN sing 175 n n C2' H2' FMN sing 176 n n O2' HO2' FMN sing 177 n n C3' O3' FMN sing 178 n n C3' C4' FMN sing 179 n n C3' H3' FMN sing 180 n n O3' HO3' FMN sing 181 n n C4' O4' FMN sing 182 n n C4' C5' FMN sing 183 n n C4' H4' FMN sing 184 n n O4' HO4' FMN sing 185 n n C5' O5' FMN sing 186 n n C5' "H5'1" FMN sing 187 n n C5' "H5'2" FMN sing 188 n n O5' P FMN sing 189 n n P O1P FMN doub 190 n n P O2P FMN sing 191 n n P O3P FMN sing 192 n n O2P HOP2 FMN sing 193 n n O3P HOP3 FMN sing 194 n n # _atom_sites.entry_id 6AJE _atom_sites.fract_transf_matrix[1][1] 0.00752 _atom_sites.fract_transf_matrix[1][2] 0.004342 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008683 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004651 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FMN A 1 501 451 FMN FMN . F 3 ORO A 1 502 452 ORO ORO . G 4 9AU A 1 503 501 9AU DRG . H 2 FMN B 1 501 451 FMN FMN . I 3 ORO B 1 502 452 ORO ORO . J 4 9AU B 1 503 501 9AU DRG . K 2 FMN C 1 501 451 FMN FMN . L 3 ORO C 1 502 452 ORO ORO . M 4 9AU C 1 503 501 9AU DRG . N 2 FMN D 1 501 451 FMN FMN . O 3 ORO D 1 502 452 ORO ORO . P 4 9AU D 1 503 501 9AU DRG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . E 2 6.867 -133.677 175.01 1 30.04 ? N1 FMN 501 A 1 HETATM 2 C C2 FMN . . . E 2 7.67 -134.344 175.876 1 30.06 ? C2 FMN 501 A 1 HETATM 3 O O2 FMN . . . E 2 8.313 -133.687 176.72 1 30.21 ? O2 FMN 501 A 1 HETATM 4 N N3 FMN . . . E 2 7.812 -135.688 175.854 1 29.97 ? N3 FMN 501 A 1 HETATM 5 C C4 FMN . . . E 2 7.16 -136.462 174.974 1 29.91 ? C4 FMN 501 A 1 HETATM 6 O O4 FMN . . . E 2 7.32 -137.702 174.986 1 30 ? O4 FMN 501 A 1 HETATM 7 C C4A FMN . . . E 2 6.249 -135.808 174.006 1 29.94 ? C4A FMN 501 A 1 HETATM 8 N N5 FMN . . . E 2 5.544 -136.514 173.107 1 29.98 ? N5 FMN 501 A 1 HETATM 9 C C5A FMN . . . E 2 4.74 -135.892 172.225 1 30.21 ? C5A FMN 501 A 1 HETATM 10 C C6 FMN . . . E 2 4.062 -136.676 171.312 1 30.41 ? C6 FMN 501 A 1 HETATM 11 C C7 FMN . . . E 2 3.215 -136.093 170.386 1 30.83 ? C7 FMN 501 A 1 HETATM 12 C C7M FMN . . . E 2 2.532 -137.045 169.443 1 31.19 ? C7M FMN 501 A 1 HETATM 13 C C8 FMN . . . E 2 3.022 -134.593 170.376 1 31.04 ? C8 FMN 501 A 1 HETATM 14 C C8M FMN . . . E 2 2.125 -133.846 169.411 1 31.6 ? C8M FMN 501 A 1 HETATM 15 C C9 FMN . . . E 2 3.72 -133.813 171.289 1 30.75 ? C9 FMN 501 A 1 HETATM 16 C C9A FMN . . . E 2 4.58 -134.4 172.224 1 30.37 ? C9A FMN 501 A 1 HETATM 17 N N10 FMN . . . E 2 5.305 -133.641 173.181 1 30.23 ? N10 FMN 501 A 1 HETATM 18 C C10 FMN . . . E 2 6.148 -134.329 174.074 1 30.02 ? C10 FMN 501 A 1 HETATM 19 C C1' FMN . . . E 2 5.203 -132.182 173.279 1 30.41 ? C1' FMN 501 A 1 HETATM 20 C C2' FMN . . . E 2 6.163 -131.582 172.283 1 30.58 ? C2' FMN 501 A 1 HETATM 21 O O2' FMN . . . E 2 7.475 -131.899 172.748 1 30.3 ? O2' FMN 501 A 1 HETATM 22 C C3' FMN . . . E 2 5.995 -130.071 172.154 1 31.01 ? C3' FMN 501 A 1 HETATM 23 O O3' FMN . . . E 2 6.232 -129.486 173.434 1 30.99 ? O3' FMN 501 A 1 HETATM 24 C C4' FMN . . . E 2 4.61 -129.627 171.683 1 31.47 ? C4' FMN 501 A 1 HETATM 25 O O4' FMN . . . E 2 4.177 -130.465 170.619 1 31.65 ? O4' FMN 501 A 1 HETATM 26 C C5' FMN . . . E 2 4.587 -128.179 171.217 1 32.08 ? C5' FMN 501 A 1 HETATM 27 O O5' FMN . . . E 2 5.481 -128.001 170.118 1 32.47 ? O5' FMN 501 A 1 HETATM 28 P P FMN . . . E 2 5.046 -127.547 168.634 1 33.38 ? P FMN 501 A 1 HETATM 29 O O1P FMN . . . E 2 6.162 -126.609 168.212 1 33.69 ? O1P FMN 501 A 1 HETATM 30 O O2P FMN . . . E 2 3.667 -126.939 168.718 1 33.65 ? O2P FMN 501 A 1 HETATM 31 O O3P FMN . . . E 2 5.037 -128.848 167.9 1 33.42 ? O3P FMN 501 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #