data_6AJE # _model_server_result.job_id W3vZClbGbJIPrWquAaBPnQ _model_server_result.datetime_utc '2024-11-24 12:31:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6aje # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":501}' # _entry.id 6AJE # _exptl.entry_id 6AJE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6AJE _cell.length_a 132.984 _cell.length_b 132.984 _cell.length_c 214.998 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AJE _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G 1 1 B,H,I,J 2 1 C,K,L,M 3 1 D,N,O,P 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 K N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 98 A CYS 76 1_555 A SG CYS 166 A CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 C SG CYS 98 C CYS 76 1_555 C SG CYS 166 C CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf3 D SG CYS 98 D CYS 76 1_555 D SG CYS 166 D CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 141 n n N1 C10 FMN doub 142 n n C2 O2 FMN doub 143 n n C2 N3 FMN sing 144 n n N3 C4 FMN sing 145 n n N3 HN3 FMN sing 146 n n C4 O4 FMN doub 147 n n C4 C4A FMN sing 148 n n C4A N5 FMN doub 149 n n C4A C10 FMN sing 150 n n N5 C5A FMN sing 151 n n C5A C6 FMN doub 152 n y C5A C9A FMN sing 153 n y C6 C7 FMN sing 154 n y C6 H6 FMN sing 155 n n C7 C7M FMN sing 156 n n C7 C8 FMN doub 157 n y C7M HM71 FMN sing 158 n n C7M HM72 FMN sing 159 n n C7M HM73 FMN sing 160 n n C8 C8M FMN sing 161 n n C8 C9 FMN sing 162 n y C8M HM81 FMN sing 163 n n C8M HM82 FMN sing 164 n n C8M HM83 FMN sing 165 n n C9 C9A FMN doub 166 n y C9 H9 FMN sing 167 n n C9A N10 FMN sing 168 n n N10 C10 FMN sing 169 n n N10 C1' FMN sing 170 n n C1' C2' FMN sing 171 n n C1' "H1'1" FMN sing 172 n n C1' "H1'2" FMN sing 173 n n C2' O2' FMN sing 174 n n C2' C3' FMN sing 175 n n C2' H2' FMN sing 176 n n O2' HO2' FMN sing 177 n n C3' O3' FMN sing 178 n n C3' C4' FMN sing 179 n n C3' H3' FMN sing 180 n n O3' HO3' FMN sing 181 n n C4' O4' FMN sing 182 n n C4' C5' FMN sing 183 n n C4' H4' FMN sing 184 n n O4' HO4' FMN sing 185 n n C5' O5' FMN sing 186 n n C5' "H5'1" FMN sing 187 n n C5' "H5'2" FMN sing 188 n n O5' P FMN sing 189 n n P O1P FMN doub 190 n n P O2P FMN sing 191 n n P O3P FMN sing 192 n n O2P HOP2 FMN sing 193 n n O3P HOP3 FMN sing 194 n n # _atom_sites.entry_id 6AJE _atom_sites.fract_transf_matrix[1][1] 0.00752 _atom_sites.fract_transf_matrix[1][2] 0.004342 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008683 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004651 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FMN A 1 501 451 FMN FMN . F 3 ORO A 1 502 452 ORO ORO . G 4 9AU A 1 503 501 9AU DRG . H 2 FMN B 1 501 451 FMN FMN . I 3 ORO B 1 502 452 ORO ORO . J 4 9AU B 1 503 501 9AU DRG . K 2 FMN C 1 501 451 FMN FMN . L 3 ORO C 1 502 452 ORO ORO . M 4 9AU C 1 503 501 9AU DRG . N 2 FMN D 1 501 451 FMN FMN . O 3 ORO D 1 502 452 ORO ORO . P 4 9AU D 1 503 501 9AU DRG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . H 2 27.449 -99.212 207.238 1 36.01 ? N1 FMN 501 B 1 HETATM 2 C C2 FMN . . . H 2 28.04 -100.348 207.675 1 36 ? C2 FMN 501 B 1 HETATM 3 O O2 FMN . . . H 2 28.288 -101.244 206.844 1 36.2 ? O2 FMN 501 B 1 HETATM 4 N N3 FMN . . . H 2 28.381 -100.545 208.957 1 35.9 ? N3 FMN 501 B 1 HETATM 5 C C4 FMN . . . H 2 28.151 -99.627 209.897 1 35.84 ? C4 FMN 501 B 1 HETATM 6 O O4 FMN . . . H 2 28.47 -99.833 211.077 1 35.96 ? O4 FMN 501 B 1 HETATM 7 C C4A FMN . . . H 2 27.517 -98.356 209.5 1 35.9 ? C4A FMN 501 B 1 HETATM 8 N N5 FMN . . . H 2 27.253 -97.388 210.39 1 36.04 ? N5 FMN 501 B 1 HETATM 9 C C5A FMN . . . H 2 26.656 -96.246 210.011 1 36.22 ? C5A FMN 501 B 1 HETATM 10 C C6 FMN . . . H 2 26.412 -95.291 210.979 1 36.48 ? C6 FMN 501 B 1 HETATM 11 C C7 FMN . . . H 2 25.811 -94.089 210.65 1 36.88 ? C7 FMN 501 B 1 HETATM 12 C C7M FMN . . . H 2 25.564 -93.092 211.754 1 37.42 ? C7M FMN 501 B 1 HETATM 13 C C8 FMN . . . H 2 25.424 -93.834 209.237 1 36.98 ? C8 FMN 501 B 1 HETATM 14 C C8M FMN . . . H 2 24.766 -92.542 208.822 1 37.57 ? C8M FMN 501 B 1 HETATM 15 C C9 FMN . . . H 2 25.672 -94.796 208.269 1 36.68 ? C9 FMN 501 B 1 HETATM 16 C C9A FMN . . . H 2 26.28 -96.008 208.589 1 36.41 ? C9A FMN 501 B 1 HETATM 17 N N10 FMN . . . H 2 26.557 -97.022 207.633 1 36.6 ? N10 FMN 501 B 1 HETATM 18 C C10 FMN . . . H 2 27.167 -98.202 208.078 1 36.07 ? C10 FMN 501 B 1 HETATM 19 C C1' FMN . . . H 2 26.232 -96.91 206.201 1 37.43 ? C1' FMN 501 B 1 HETATM 20 C C2' FMN . . . H 2 24.802 -97.388 205.952 1 37.81 ? C2' FMN 501 B 1 HETATM 21 O O2' FMN . . . H 2 24.72 -98.806 206.191 1 37.4 ? O2' FMN 501 B 1 HETATM 22 C C3' FMN . . . H 2 24.331 -97.073 204.522 1 38.53 ? C3' FMN 501 B 1 HETATM 23 O O3' FMN . . . H 2 25.128 -97.839 203.6 1 38.72 ? O3' FMN 501 B 1 HETATM 24 C C4' FMN . . . H 2 24.39 -95.586 204.126 1 39.34 ? C4' FMN 501 B 1 HETATM 25 O O4' FMN . . . H 2 24.039 -94.71 205.203 1 39.19 ? O4' FMN 501 B 1 HETATM 26 C C5' FMN . . . H 2 23.456 -95.276 202.961 1 40.2 ? C5' FMN 501 B 1 HETATM 27 O O5' FMN . . . H 2 22.078 -95.355 203.356 1 40.86 ? O5' FMN 501 B 1 HETATM 28 P P FMN . . . H 2 21.138 -94.058 203.594 1 42.07 ? P FMN 501 B 1 HETATM 29 O O1P FMN . . . H 2 19.735 -94.613 203.358 1 42.04 ? O1P FMN 501 B 1 HETATM 30 O O2P FMN . . . H 2 21.589 -93.049 202.566 1 42.58 ? O2P FMN 501 B 1 HETATM 31 O O3P FMN . . . H 2 21.467 -93.563 204.983 1 41.74 ? O3P FMN 501 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 226 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #