data_6AJE # _model_server_result.job_id LFuQfxy1MDAQON9EEbY3Uw _model_server_result.datetime_utc '2024-11-24 12:47:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6aje # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":502}' # _entry.id 6AJE # _exptl.entry_id 6AJE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.096 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OROTIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6AJE _cell.length_a 132.984 _cell.length_b 132.984 _cell.length_c 214.998 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AJE _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G 1 1 B,H,I,J 2 1 C,K,L,M 3 1 D,N,O,P 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N ? 3 L N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 98 A CYS 76 1_555 A SG CYS 166 A CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 C SG CYS 98 C CYS 76 1_555 C SG CYS 166 C CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf3 D SG CYS 98 D CYS 76 1_555 D SG CYS 166 D CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? # _chem_comp.formula 'C5 H4 N2 O4' _chem_comp.formula_weight 156.096 _chem_comp.id ORO _chem_comp.mon_nstd_flag . _chem_comp.name 'OROTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 ORO sing 347 n y N1 C6 ORO sing 348 n y N1 HN1 ORO sing 349 n n C2 O2 ORO doub 350 n n C2 N3 ORO sing 351 n y N3 C4 ORO sing 352 n y N3 HN3 ORO sing 353 n n C4 O4 ORO doub 354 n n C4 C5 ORO sing 355 n y C5 C6 ORO doub 356 n y C5 H5 ORO sing 357 n n C6 C7 ORO sing 358 n n C7 O71 ORO doub 359 n n C7 O72 ORO sing 360 n n O72 HO7 ORO sing 361 n n # _atom_sites.entry_id 6AJE _atom_sites.fract_transf_matrix[1][1] 0.00752 _atom_sites.fract_transf_matrix[1][2] 0.004342 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008683 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004651 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FMN A 1 501 451 FMN FMN . F 3 ORO A 1 502 452 ORO ORO . G 4 9AU A 1 503 501 9AU DRG . H 2 FMN B 1 501 451 FMN FMN . I 3 ORO B 1 502 452 ORO ORO . J 4 9AU B 1 503 501 9AU DRG . K 2 FMN C 1 501 451 FMN FMN . L 3 ORO C 1 502 452 ORO ORO . M 4 9AU C 1 503 501 9AU DRG . N 2 FMN D 1 501 451 FMN FMN . O 3 ORO D 1 502 452 ORO ORO . P 4 9AU D 1 503 501 9AU DRG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 ORO . . . L 3 44.159 -139.192 128.866 1 29.86 ? N1 ORO 502 C 1 HETATM 2 C C2 ORO . . . L 3 44.968 -139.956 129.622 1 29.93 ? C2 ORO 502 C 1 HETATM 3 O O2 ORO . . . L 3 44.844 -141.198 129.635 1 30.11 ? O2 ORO 502 C 1 HETATM 4 N N3 ORO . . . L 3 45.931 -139.398 130.37 1 29.92 ? N3 ORO 502 C 1 HETATM 5 C C4 ORO . . . L 3 46.106 -138.069 130.392 1 29.84 ? C4 ORO 502 C 1 HETATM 6 O O4 ORO . . . L 3 46.991 -137.541 131.089 1 29.98 ? O4 ORO 502 C 1 HETATM 7 C C5 ORO . . . L 3 45.29 -137.266 129.632 1 29.73 ? C5 ORO 502 C 1 HETATM 8 C C6 ORO . . . L 3 44.313 -137.858 128.862 1 29.8 ? C6 ORO 502 C 1 HETATM 9 C C7 ORO . . . L 3 43.466 -136.943 128.046 1 29.93 ? C7 ORO 502 C 1 HETATM 10 O O71 ORO . . . L 3 43.963 -136.479 126.989 1 30.11 ? O71 ORO 502 C 1 HETATM 11 O O72 ORO . . . L 3 42.323 -136.639 128.457 1 29.96 ? O72 ORO 502 C 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 11 #