data_6AJE # _model_server_result.job_id jALwAbBPTG0QD1KXTmANEg _model_server_result.datetime_utc '2024-11-08 15:45:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6aje # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":503}' # _entry.id 6AJE # _exptl.entry_id 6AJE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 366.493 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-oxidanyl-3-[(2~{E},6~{E})-3,7,11-trimethyldodeca-2,6,10-trienyl]chromen-2-one _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6AJE _cell.length_a 132.984 _cell.length_b 132.984 _cell.length_c 214.998 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6AJE _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G 1 1 B,H,I,J 2 1 C,K,L,M 3 1 D,N,O,P 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N ? 4 M N N ? 4 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 98 A CYS 76 1_555 A SG CYS 166 A CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 C SG CYS 98 C CYS 76 1_555 C SG CYS 166 C CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf3 D SG CYS 98 D CYS 76 1_555 D SG CYS 166 D CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? # _chem_comp.formula 'C24 H30 O3' _chem_comp.formula_weight 366.493 _chem_comp.id 9AU _chem_comp.mon_nstd_flag . _chem_comp.name 4-oxidanyl-3-[(2~{E},6~{E})-3,7,11-trimethyldodeca-2,6,10-trienyl]chromen-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAB CAT 9AU sing 1 n n CAA CAT 9AU sing 2 n n CAT CAG 9AU doub 3 n n CAG CAN 9AU sing 4 n n CAN CAQ 9AU sing 5 n n CAQ CAU 9AU sing 6 n n CAU CAC 9AU sing 7 n n CAU CAH 9AU doub 8 e n CAH CAO 9AU sing 9 n n CAO CAR 9AU sing 10 n n CAR CAV 9AU sing 11 n n CAD CAV 9AU sing 12 n n CAV CAI 9AU doub 13 e n CAI CAP 9AU sing 14 n n OAF CAW 9AU sing 15 n n CAP CAX 9AU sing 16 n n CAW CAX 9AU doub 17 n n CAW CBA 9AU sing 18 n n CAX CAY 9AU sing 19 n n CAM CBA 9AU doub 20 n y CAM CAK 9AU sing 21 n y CBA CAZ 9AU sing 22 n y CAY OAE 9AU doub 23 n n CAY OAS 9AU sing 24 n n CAK CAJ 9AU doub 25 n y CAZ OAS 9AU sing 26 n n CAZ CAL 9AU doub 27 n y CAJ CAL 9AU sing 28 n y CAM H1 9AU sing 29 n n CAK H2 9AU sing 30 n n CAJ H3 9AU sing 31 n n CAL H4 9AU sing 32 n n OAF H5 9AU sing 33 n n CAP H6 9AU sing 34 n n CAP H7 9AU sing 35 n n CAI H8 9AU sing 36 n n CAD H9 9AU sing 37 n n CAD H10 9AU sing 38 n n CAD H11 9AU sing 39 n n CAR H12 9AU sing 40 n n CAR H13 9AU sing 41 n n CAO H14 9AU sing 42 n n CAO H15 9AU sing 43 n n CAH H16 9AU sing 44 n n CAC H17 9AU sing 45 n n CAC H18 9AU sing 46 n n CAC H19 9AU sing 47 n n CAQ H20 9AU sing 48 n n CAQ H21 9AU sing 49 n n CAN H22 9AU sing 50 n n CAN H23 9AU sing 51 n n CAG H24 9AU sing 52 n n CAB H25 9AU sing 53 n n CAB H26 9AU sing 54 n n CAB H27 9AU sing 55 n n CAA H28 9AU sing 56 n n CAA H29 9AU sing 57 n n CAA H30 9AU sing 58 n n # _atom_sites.entry_id 6AJE _atom_sites.fract_transf_matrix[1][1] 0.00752 _atom_sites.fract_transf_matrix[1][2] 0.004342 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008683 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004651 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FMN A 1 501 451 FMN FMN . F 3 ORO A 1 502 452 ORO ORO . G 4 9AU A 1 503 501 9AU DRG . H 2 FMN B 1 501 451 FMN FMN . I 3 ORO B 1 502 452 ORO ORO . J 4 9AU B 1 503 501 9AU DRG . K 2 FMN C 1 501 451 FMN FMN . L 3 ORO C 1 502 452 ORO ORO . M 4 9AU C 1 503 501 9AU DRG . N 2 FMN D 1 501 451 FMN FMN . O 3 ORO D 1 502 452 ORO ORO . P 4 9AU D 1 503 501 9AU DRG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAE 9AU . . . J 4 14.864 -91.439 216.103 1 66.52 ? OAE 9AU 503 B 1 HETATM 2 C CAY 9AU . . . J 4 15.988 -90.976 215.807 1 66.84 ? CAY 9AU 503 B 1 HETATM 3 O OAS 9AU . . . J 4 17.016 -91.87 215.604 1 64.58 ? OAS 9AU 503 B 1 HETATM 4 C CAZ 9AU . . . J 4 18.274 -91.441 215.269 1 63.6 ? CAZ 9AU 503 B 1 HETATM 5 C CBA 9AU . . . J 4 18.539 -90.08 215.114 1 64.86 ? CBA 9AU 503 B 1 HETATM 6 C CAM 9AU . . . J 4 19.832 -89.66 214.757 1 64.04 ? CAM 9AU 503 B 1 HETATM 7 C CAK 9AU . . . J 4 20.841 -90.595 214.55 1 62.81 ? CAK 9AU 503 B 1 HETATM 8 C CAJ 9AU . . . J 4 20.56 -91.951 214.695 1 62.14 ? CAJ 9AU 503 B 1 HETATM 9 C CAL 9AU . . . J 4 19.28 -92.367 215.058 1 62.28 ? CAL 9AU 503 B 1 HETATM 10 C CAW 9AU . . . J 4 17.501 -89.158 215.324 1 67.56 ? CAW 9AU 503 B 1 HETATM 11 O OAF 9AU . . . J 4 17.804 -87.839 215.171 1 68.25 ? OAF 9AU 503 B 1 HETATM 12 C CAX 9AU . . . J 4 16.2 -89.589 215.679 1 69.03 ? CAX 9AU 503 B 1 HETATM 13 C CAP 9AU . . . J 4 15.025 -88.669 215.928 1 72.34 ? CAP 9AU 503 B 1 HETATM 14 C CAI 9AU . . . J 4 14.991 -87.186 215.838 1 74.63 ? CAI 9AU 503 B 1 HETATM 15 C CAV 9AU . . . J 4 13.887 -86.405 216.026 1 76.93 ? CAV 9AU 503 B 1 HETATM 16 C CAD 9AU . . . J 4 14.055 -84.921 215.862 1 77.76 ? CAD 9AU 503 B 1 HETATM 17 C CAR 9AU . . . J 4 12.471 -86.892 216.335 1 78.73 ? CAR 9AU 503 B 1 HETATM 18 C CAO 9AU . . . J 4 12.266 -87.827 217.542 1 79.13 ? CAO 9AU 503 B 1 HETATM 19 C CAH 9AU . . . J 4 11.682 -89.182 217.105 1 77.66 ? CAH 9AU 503 B 1 HETATM 20 C CAU 9AU . . . J 4 10.408 -89.411 216.674 1 76.5 ? CAU 9AU 503 B 1 HETATM 21 C CAC 9AU . . . J 4 9.359 -88.339 216.54 1 78.18 ? CAC 9AU 503 B 1 HETATM 22 C CAQ 9AU . . . J 4 9.955 -90.791 216.252 1 74.31 ? CAQ 9AU 503 B 1 HETATM 23 C CAN 9AU . . . J 4 10.49 -91.966 217.082 1 73.31 ? CAN 9AU 503 B 1 HETATM 24 C CAG 9AU . . . J 4 11.573 -92.715 216.31 1 71.08 ? CAG 9AU 503 B 1 HETATM 25 C CAT 9AU . . . J 4 11.861 -94.033 216.448 1 68.92 ? CAT 9AU 503 B 1 HETATM 26 C CAB 9AU . . . J 4 12.96 -94.579 215.59 1 67.14 ? CAB 9AU 503 B 1 HETATM 27 C CAA 9AU . . . J 4 11.151 -94.967 217.398 1 69.06 ? CAA 9AU 503 B 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 58 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #