data_6AJE
#
_model_server_result.job_id            hFw0jGiJSzhhrPmScogqYQ 
_model_server_result.datetime_utc      '2024-11-08 16:15:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6aje 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":503}' 
#
_entry.id    6AJE 
#
_exptl.entry_id    6AJE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              366.493 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-oxidanyl-3-[(2~{E},6~{E})-3,7,11-trimethyldodeca-2,6,10-trienyl]chromen-2-one 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6AJE 
_cell.length_a            132.984 
_cell.length_b            132.984 
_cell.length_c            214.998 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6AJE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G 1 1 
B,H,I,J 2 1 
C,K,L,M 3 1 
D,N,O,P 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 J N N 
? 4 M N N 
? 4 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 98 A CYS 76 1_555 A SG CYS 166 A CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf2 C SG CYS 98 C CYS 76 1_555 C SG CYS 166 C CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf3 D SG CYS 98 D CYS 76 1_555 D SG CYS 166 D CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
#
_chem_comp.formula           'C24 H30 O3' 
_chem_comp.formula_weight    366.493 
_chem_comp.id                9AU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-oxidanyl-3-[(2~{E},6~{E})-3,7,11-trimethyldodeca-2,6,10-trienyl]chromen-2-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAB CAT 9AU sing 1 n n 
CAA CAT 9AU sing 2 n n 
CAT CAG 9AU doub 3 n n 
CAG CAN 9AU sing 4 n n 
CAN CAQ 9AU sing 5 n n 
CAQ CAU 9AU sing 6 n n 
CAU CAC 9AU sing 7 n n 
CAU CAH 9AU doub 8 e n 
CAH CAO 9AU sing 9 n n 
CAO CAR 9AU sing 10 n n 
CAR CAV 9AU sing 11 n n 
CAD CAV 9AU sing 12 n n 
CAV CAI 9AU doub 13 e n 
CAI CAP 9AU sing 14 n n 
OAF CAW 9AU sing 15 n n 
CAP CAX 9AU sing 16 n n 
CAW CAX 9AU doub 17 n n 
CAW CBA 9AU sing 18 n n 
CAX CAY 9AU sing 19 n n 
CAM CBA 9AU doub 20 n y 
CAM CAK 9AU sing 21 n y 
CBA CAZ 9AU sing 22 n y 
CAY OAE 9AU doub 23 n n 
CAY OAS 9AU sing 24 n n 
CAK CAJ 9AU doub 25 n y 
CAZ OAS 9AU sing 26 n n 
CAZ CAL 9AU doub 27 n y 
CAJ CAL 9AU sing 28 n y 
CAM H1 9AU sing 29 n n 
CAK H2 9AU sing 30 n n 
CAJ H3 9AU sing 31 n n 
CAL H4 9AU sing 32 n n 
OAF H5 9AU sing 33 n n 
CAP H6 9AU sing 34 n n 
CAP H7 9AU sing 35 n n 
CAI H8 9AU sing 36 n n 
CAD H9 9AU sing 37 n n 
CAD H10 9AU sing 38 n n 
CAD H11 9AU sing 39 n n 
CAR H12 9AU sing 40 n n 
CAR H13 9AU sing 41 n n 
CAO H14 9AU sing 42 n n 
CAO H15 9AU sing 43 n n 
CAH H16 9AU sing 44 n n 
CAC H17 9AU sing 45 n n 
CAC H18 9AU sing 46 n n 
CAC H19 9AU sing 47 n n 
CAQ H20 9AU sing 48 n n 
CAQ H21 9AU sing 49 n n 
CAN H22 9AU sing 50 n n 
CAN H23 9AU sing 51 n n 
CAG H24 9AU sing 52 n n 
CAB H25 9AU sing 53 n n 
CAB H26 9AU sing 54 n n 
CAB H27 9AU sing 55 n n 
CAA H28 9AU sing 56 n n 
CAA H29 9AU sing 57 n n 
CAA H30 9AU sing 58 n n 
#
_atom_sites.entry_id                     6AJE 
_atom_sites.fract_transf_matrix[1][1]    0.00752 
_atom_sites.fract_transf_matrix[1][2]    0.004342 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008683 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004651 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FMN A 1 501 451 FMN FMN . 
F 3 ORO A 1 502 452 ORO ORO . 
G 4 9AU A 1 503 501 9AU DRG . 
H 2 FMN B 1 501 451 FMN FMN . 
I 3 ORO B 1 502 452 ORO ORO . 
J 4 9AU B 1 503 501 9AU DRG . 
K 2 FMN C 1 501 451 FMN FMN . 
L 3 ORO C 1 502 452 ORO ORO . 
M 4 9AU C 1 503 501 9AU DRG . 
N 2 FMN D 1 501 451 FMN FMN . 
O 3 ORO D 1 502 452 ORO ORO . 
P 4 9AU D 1 503 501 9AU DRG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAE 9AU . . . P 4 13.066 -123.866 123.313 1 59.24 ? OAE 9AU 503 D 1 
HETATM 2 C CAY 9AU . . . P 4 13.9 -123.505 124.151 1 58.77 ? CAY 9AU 503 D 1 
HETATM 3 O OAS 9AU . . . P 4 14.843 -122.616 123.679 1 57.57 ? OAS 9AU 503 D 1 
HETATM 4 C CAZ 9AU . . . P 4 15.831 -122.124 124.494 1 56.97 ? CAZ 9AU 503 D 1 
HETATM 5 C CBA 9AU . . . P 4 15.881 -122.544 125.829 1 56.88 ? CBA 9AU 503 D 1 
HETATM 6 C CAM 9AU . . . P 4 16.892 -122.038 126.654 1 56.08 ? CAM 9AU 503 D 1 
HETATM 7 C CAK 9AU . . . P 4 17.827 -121.136 126.151 1 55.63 ? CAK 9AU 503 D 1 
HETATM 8 C CAJ 9AU . . . P 4 17.769 -120.722 124.821 1 55.68 ? CAJ 9AU 503 D 1 
HETATM 9 C CAL 9AU . . . P 4 16.77 -121.217 123.987 1 56.15 ? CAL 9AU 503 D 1 
HETATM 10 C CAW 9AU . . . P 4 14.921 -123.454 126.306 1 58.02 ? CAW 9AU 503 D 1 
HETATM 11 O OAF 9AU . . . P 4 14.997 -123.842 127.604 1 57.49 ? OAF 9AU 503 D 1 
HETATM 12 C CAX 9AU . . . P 4 13.899 -123.963 125.483 1 59.58 ? CAX 9AU 503 D 1 
HETATM 13 C CAP 9AU . . . P 4 12.897 -124.933 126.098 1 62.38 ? CAP 9AU 503 D 1 
HETATM 14 C CAI 9AU . . . P 4 11.768 -125.655 125.432 1 64.69 ? CAI 9AU 503 D 1 
HETATM 15 C CAV 9AU . . . P 4 11.041 -126.689 126.009 1 66.61 ? CAV 9AU 503 D 1 
HETATM 16 C CAD 9AU . . . P 4 11.254 -127.14 127.437 1 66.76 ? CAD 9AU 503 D 1 
HETATM 17 C CAR 9AU . . . P 4 9.908 -127.466 125.315 1 67.68 ? CAR 9AU 503 D 1 
HETATM 18 C CAO 9AU . . . P 4 9.736 -127.314 123.793 1 67.61 ? CAO 9AU 503 D 1 
HETATM 19 C CAH 9AU . . . P 4 8.586 -128.173 123.269 1 68.52 ? CAH 9AU 503 D 1 
HETATM 20 C CAU 9AU . . . P 4 7.269 -127.809 123.24 1 69.93 ? CAU 9AU 503 D 1 
HETATM 21 C CAC 9AU . . . P 4 6.753 -126.471 123.722 1 70.33 ? CAC 9AU 503 D 1 
HETATM 22 C CAQ 9AU . . . P 4 6.228 -128.769 122.682 1 70.68 ? CAQ 9AU 503 D 1 
HETATM 23 C CAN 9AU . . . P 4 6.23 -130.145 123.361 1 71.6 ? CAN 9AU 503 D 1 
HETATM 24 C CAG 9AU . . . P 4 6.888 -131.184 122.457 1 71.67 ? CAG 9AU 503 D 1 
HETATM 25 C CAT 9AU . . . P 4 6.576 -132.504 122.457 1 72.13 ? CAT 9AU 503 D 1 
HETATM 26 C CAB 9AU . . . P 4 5.532 -133.092 123.372 1 72.98 ? CAB 9AU 503 D 1 
HETATM 27 C CAA 9AU . . . P 4 7.287 -133.435 121.514 1 71.41 ? CAA 9AU 503 D 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           27 
#